CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-TABM-60-raw-cel-680980342

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
83.4 99.9 127.1 At3g48850 824046 mitochondrial phosphate transporter, putative F:binding;P:transport;C:mitochondrial inner membrane, chloroplast, membrane;MFPO O.I. C.G. H.G.
76.4 99.9 79.7 At5g44570 834484 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
63.5 99.8 167.6 At1g64900 842798 CYP89A2 (CYTOCHROME P450 89A2) Encodes cytochrome P450 (CYP89A2). O.I. C.G. H.G.
46.8 99.8 204.3 At2g03760 814903 ST Encodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens. O.I. C.G. H.G.
45.1 99.8 95.3 At5g38900 833882 DSBA oxidoreductase family protein F:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMA O.I. C.G. H.G.
43.2 99.8 184.5 At1g05680 837075 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
42.7 99.8 51.2 At2g04070 814943 antiporter/ drug transporter/ transporter F:antiporter activity, drug transporter activity, transporter activity;P:transport, multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
39.7 99.8 158.2 At5g43450 834365 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to ACC oxidase O.I. C.G. H.G.
39.5 99.8 116.3 At1g32350 840127 AOX1D (alternative oxidase 1D) F:alternative oxidase activity;P:oxidation reduction, response to cyclopentenone;C:mitochondrial envelope, mitochondrion;OPFBM O.I. C.G. H.G.
38.5 99.8 382.5 At2g15130 816001 plant basic secretory protein (BSP) family protein F:molecular_function unknown;P:defense response;C:endomembrane system;PFBO O.I. C.G. H.G.
34.5 99.7 143.2 At3g57240 824891 BG3 (BETA-1,3-GLUCANASE 3) encodes a member of glycosyl hydrolase family 17 O.I. C.G. H.G.
34.4 99.7 112.3 At2g30770 817628 CYP71A13 (cytochrome P450, family 71, subfamily A, polypeptide 13) putative cytochrome P450 O.I. C.G. H.G.
34.3 99.7 111.0 At1g13470 837907 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
31.4 99.7 92.4 At2g21640 816702 - Encodes a protein of unknown function that is a marker for oxidative stress response. O.I. C.G. H.G.
30.2 99.7 238.1 At2g41730 818772 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
30.2 99.7 132.1 At2g04450 814985 ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6) F:ADP-ribose diphosphatase activity, hydrolase activity, NAD or NADH binding;P:response to other organism;C:cytosol;OBMPAFV O.I. C.G. H.G.
30.1 99.7 70.1 At2g04050 814939 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
29.3 99.7 103.3 At4g27585 828868 band 7 family protein F:unknown;P:biological_process unknown;C:mitochondrion, plastid, membrane;BOMPAFV O.I. C.G. H.G.
28.6 99.7 82.4 At3g13950 820608 unknown protein F:molecular_function unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
25.5 99.7 471.0 At1g75040 843842 PR5 (PATHOGENESIS-RELATED GENE 5) Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment. O.I. C.G. H.G.
24.2 99.6 70.4 At2g18680 816383 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO O.I. C.G. H.G.
22.9 99.6 69.7 At1g02450 837800 NIMIN1 (NIM1-INTERACTING 1) NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression. O.I. C.G. H.G.
22.7 99.6 14.1 At3g22360 821805 AOX1B encodes an alternative oxidase whose expression is limited to flowers and floral buds. O.I. C.G. H.G.
21.9 99.6 142.6 At4g37370 829891 CYP81D8 member of CYP81D O.I. C.G. H.G.
19.9 99.6 169.5 At3g48640 824024 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
19.3 99.6 71.4 At2g35980 818171 YLS9 (YELLOW-LEAF-SPECIFIC GENE 9) Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast. O.I. C.G. H.G.
18.8 99.5 53.0 At2g29470 817496 ATGSTU3 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 3) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
18.7 99.5 226.8 At2g37710 818348 RLK (receptor lectin kinase) Induced in response to Salicylic acid. O.I. C.G. H.G.
18.7 99.5 44.4 At4g22530 828348 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA O.I. C.G. H.G.
18.4 99.5 65.9 At5g52810 835358 ornithine cyclodeaminase/mu-crystallin family protein F:structural constituent of eye lens, binding, catalytic activity;P:arginine catabolic process to glutamate, nopaline catabolic process, metabolic process, octopine catabolic process;C:chloroplast;BOMAFP O.I. C.G. H.G.
18.1 99.5 25.5 At1g32960 840190 SBT3.3 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, plant-type cell wall;BPOAFM O.I. C.G. H.G.
17.8 99.5 264.2 At5g55450 835638 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:response to other organism, lipid transport;C:endomembrane system;P O.I. C.G. H.G.
17.8 99.5 257.4 At5g10760 830943 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFO O.I. C.G. H.G.
17.7 99.5 86.6 At4g17260 827440 L-lactate dehydrogenase, putative F:in 6 functions;P:response to salt stress, response to abscisic acid stimulus;C:plasma membrane;BOMFPA O.I. C.G. H.G.
17.7 99.5 40.1 At1g03660 839033 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.6 99.5 133.6 At3g26830 822298 PAD3 (PHYTOALEXIN DEFICIENT 3) Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin. O.I. C.G. H.G.
17.2 99.5 112.9 At2g26440 817184 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
17.1 99.5 21.9 At5g55420 835635 - Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene] O.I. C.G. H.G.
14.4 99.4 23.1 At1g33030 840198 O-methyltransferase family 2 protein F:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOM O.I. C.G. H.G.
14.2 99.4 53.6 At3g60540 825225 sec61beta family protein F:protein transporter activity;P:protein transport;C:unknown;MFPO O.I. C.G. H.G.
14.2 99.4 52.8 At2g36790 818251 UGT73C6 (UDP-glucosyl transferase 73C6) The At2g36790 gene encodes a UDP-glucose:flavonol-3-O-glycoside-7-O-glucosyltransferase (UGT73C6)attaching a glucosyl residue to the 7-O-position of the flavonols kaempferol, quercetin and their 3-O-glycoside derivatives. O.I. C.G. H.G.
13.9 99.4 244.2 At1g52200 841650 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:plasma membrane;PFMO O.I. C.G. H.G.
13.8 99.4 129.2 At5g13200 831159 GRAM domain-containing protein / ABA-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
13.4 99.4 124.2 At3g18250 821353 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMFO O.I. C.G. H.G.
13.4 99.4 73.2 At1g67810 843107 SUFE2 (SULFUR E 2) Encodes a protein capable of stimulating the cysteine desulfurase activity of CpNifS (AT1G08490) in vitro. SufE2:GFP localizes to the chloroplasts where it is likely to play a role in iron-sulfur cluster assembly. Transcript levels for this gene are high in the pollen relative to other organs based on RT-PCR analysis. O.I. C.G. H.G.
12.9 99.3 102.7 At2g30550 817604 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;PFOBMV O.I. C.G. H.G.
12.7 99.3 71.4 At3g27280 822347 ATPHB4 (PROHIBITIN 4) Part of protein complexes that are necessary for proficient mitochondrial function or biogenesis, thereby supporting cell division and differentiation in apical tissues O.I. C.G. H.G.
12.7 99.3 16.3 At1g69720 843308 ho3 (HEME OXYGENASE 3) Encodes a member (HO3) of the heme oxygenase family. O.I. C.G. H.G.
12.0 99.3 185.9 At5g26340 832703 MSS1 Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter appears to be negatively regulated by phosphorylation. Importantly, microarray analysis, as well as the study of the expression of this gene in mutants involved in programmed cell death (PCD) demonstrated a tight correlation between this gene's expression and PCD. O.I. C.G. H.G.
11.9 99.3 284.7 At3g57260 824893 BGL2 (BETA-1,3-GLUCANASE 2) beta 1,3-glucanase O.I. C.G. H.G.
11.9 99.3 132.8 At1g17170 838288 ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
11.7 99.3 39.2 At3g61630 825336 CRF6 (CYTOKININ RESPONSE FACTOR 6) CRF6 encodes one of the six cytokinin response factors. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves. O.I. C.G. H.G.
11.5 99.3 322.7 At5g03350 831863 legume lectin family protein F:carbohydrate binding, sugar binding;P:biological_process unknown;C:apoplast, cell wall, chloroplast;PBO O.I. C.G. H.G.
11.3 99.3 142.9 At3g07390 819927 AIR12 isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular. O.I. C.G. H.G.
11.1 99.2 81.7 At5g39050 833897 transferase/ transferase, transferring acyl groups other than amino-acyl groups F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
10.9 99.2 102.7 At1g24807 839085 anthranilate synthase beta subunit, putative F:catalytic activity, anthranilate synthase activity;P:glutamine metabolic process, biosynthetic process, metabolic process;C:chloroplast;BOFAMP O.I. C.G. H.G.
10.7 99.2 188.8 At3g22370 821806 AOX1A (ALTERNATIVE OXIDASE 1A) Encodes an isoform of alternative oxidase that is expressed in rosettes, flowers, and root. The alternative oxidase of plant mitochondria transfers electrons from the ubiquinone pool to oxygen without energy conservations. It is regulated through transcriptional control and by pyruvate. Plays a role in shoot acclimation to low temperature. Also is capable of ameliorating reactive oxygen species production when the cytochrome pathway is inhibited. O.I. C.G. H.G.
10.7 99.2 67.7 At3g22060 821768 receptor protein kinase-related contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069, however this protein does not have the protein kinase domain O.I. C.G. H.G.
10.7 99.2 33.3 At1g73805 843716 calmodulin binding F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.6 99.2 57.4 At5g51830 835258 pfkB-type carbohydrate kinase family protein F:kinase activity, ribokinase activity;P:response to cadmium ion;C:cellular_component unknown;BOPAMF O.I. C.G. H.G.
10.6 99.2 49.0 At1g66590 842977 cox19 family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOP O.I. C.G. H.G.
10.6 99.2 43.9 At1g65690 842880 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
10.6 99.2 10.5 At5g04330 830312 cytochrome P450, putative / ferulate-5-hydroxylase, putative F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:endomembrane system;MPFBOAV O.I. C.G. H.G.
10.5 99.2 49.0 At1g32940 840188 SBT3.5 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOAFM O.I. C.G. H.G.
10.5 99.2 47.4 At5g54610 835550 ANK (ankyrin) Induced in response to Salicylic acid. Belongs to the ankyrin repeat protein family. O.I. C.G. H.G.
10.5 99.2 18.7 At4g11370 826739 RHA1A Encodes a putative RING-H2 finger protein RHA1a. O.I. C.G. H.G.
10.3 99.2 29.4 At3g20590 821606 non-race specific disease resistance protein, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.2 99.2 8.3 At2g38520 3767738 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
10.0 99.2 19.3 At3g03060 821146 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:cell wall, plant-type cell wall;OMBFPAV O.I. C.G. H.G.
9.9 99.1 413.8 At2g14610 815949 PR1 (PATHOGENESIS-RELATED GENE 1) PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called 'PR-1-like', the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive. O.I. C.G. H.G.
9.7 99.1 152.4 At2g18690 816384 unknown protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PB O.I. C.G. H.G.
9.7 99.1 65.7 At5g51440 835218 23.5 kDa mitochondrial small heat shock protein (HSP23.5-M) F:molecular_function unknown;P:response to heat;C:unknown;BPOAFM O.I. C.G. H.G.
9.6 99.1 567.5 At1g14870 838052 - F:molecular_function unknown;P:response to oxidative stress;C:plasma membrane;PMFO O.I. C.G. H.G.
9.6 99.1 27.0 At2g39710 818555 aspartyl protease family protein Encodes a Cysteine-rich peptide (CRP) family protein O.I. C.G. H.G.
9.5 99.1 305.2 At2g14560 815943 LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA) Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica. LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5. O.I. C.G. H.G.
9.5 99.1 84.3 At2g04040 814938 TX1 AtDTX1 (At2g04040) has been identified as a detoxifying efflux carrier for plant-derived antibiotics and other toxic compounds, including CD2+. O.I. C.G. H.G.
9.5 99.1 23.7 At4g11000 826701 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA O.I. C.G. H.G.
9.2 99.1 25.9 At1g28190 839713 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. C.G. H.G.
9.1 99.1 28.3 At2g20720 816600 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
8.9 99.0 177.5 At5g19240 832044 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
8.9 99.0 144.7 At5g24530 832524 DMR6 (DOWNY MILDEW RESISTANT 6) Encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew. O.I. C.G. H.G.
8.9 99.0 56.2 At3g26210 822222 CYP71B23 putative cytochrome P450 O.I. C.G. H.G.
8.6 99.0 58.0 At2g29350 817484 SAG13 senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase O.I. C.G. H.G.
8.6 99.0 19.7 At4g39740 830129 electron transport SCO1/SenC family protein F:molecular_function unknown;P:unknown;C:unknown;BOMFPA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
83.4	99.9	127.1	At3g48850	824046	mitochondrial phosphate transporter, putative	F:binding;P:transport;C:mitochondrial inner membrane, chloroplast, membrane;MFPO	O.I.	C.G.	H.G.
76.4	99.9	79.7	At5g44570	834484	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
63.5	99.8	167.6	At1g64900	842798	CYP89A2 (CYTOCHROME P450 89A2)	Encodes cytochrome P450 (CYP89A2).	O.I.	C.G.	H.G.
46.8	99.8	204.3	At2g03760	814903	ST	Encodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens.	O.I.	C.G.	H.G.
45.1	99.8	95.3	At5g38900	833882	DSBA oxidoreductase family protein	F:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMA	O.I.	C.G.	H.G.
43.2	99.8	184.5	At1g05680	837075	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
42.7	99.8	51.2	At2g04070	814943	antiporter/ drug transporter/ transporter	F:antiporter activity, drug transporter activity, transporter activity;P:transport, multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
39.7	99.8	158.2	At5g43450	834365	2-oxoglutarate-dependent dioxygenase, putative	encodes a protein whose sequence is similar to ACC oxidase	O.I.	C.G.	H.G.
39.5	99.8	116.3	At1g32350	840127	AOX1D (alternative oxidase 1D)	F:alternative oxidase activity;P:oxidation reduction, response to cyclopentenone;C:mitochondrial envelope, mitochondrion;OPFBM	O.I.	C.G.	H.G.
38.5	99.8	382.5	At2g15130	816001	plant basic secretory protein (BSP) family protein	F:molecular_function unknown;P:defense response;C:endomembrane system;PFBO	O.I.	C.G.	H.G.
34.5	99.7	143.2	At3g57240	824891	BG3 (BETA-1,3-GLUCANASE 3)	encodes a member of glycosyl hydrolase family 17	O.I.	C.G.	H.G.
34.4	99.7	112.3	At2g30770	817628	CYP71A13 (cytochrome P450, family 71, subfamily A, polypeptide 13)	putative cytochrome P450	O.I.	C.G.	H.G.
34.3	99.7	111.0	At1g13470	837907	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
31.4	99.7	92.4	At2g21640	816702	-	Encodes a protein of unknown function that is a marker for oxidative stress response.	O.I.	C.G.	H.G.
30.2	99.7	238.1	At2g41730	818772	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
30.2	99.7	132.1	At2g04450	814985	ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6)	F:ADP-ribose diphosphatase activity, hydrolase activity, NAD or NADH binding;P:response to other organism;C:cytosol;OBMPAFV	O.I.	C.G.	H.G.
30.1	99.7	70.1	At2g04050	814939	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
29.3	99.7	103.3	At4g27585	828868	band 7 family protein	F:unknown;P:biological_process unknown;C:mitochondrion, plastid, membrane;BOMPAFV	O.I.	C.G.	H.G.
28.6	99.7	82.4	At3g13950	820608	unknown protein	F:molecular_function unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
25.5	99.7	471.0	At1g75040	843842	PR5 (PATHOGENESIS-RELATED GENE 5)	Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment.	O.I.	C.G.	H.G.
24.2	99.6	70.4	At2g18680	816383	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO	O.I.	C.G.	H.G.
22.9	99.6	69.7	At1g02450	837800	NIMIN1 (NIM1-INTERACTING 1)	NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression.	O.I.	C.G.	H.G.
22.7	99.6	14.1	At3g22360	821805	AOX1B	encodes an alternative oxidase whose expression is limited to flowers and floral buds.	O.I.	C.G.	H.G.
21.9	99.6	142.6	At4g37370	829891	CYP81D8	member of CYP81D	O.I.	C.G.	H.G.
19.9	99.6	169.5	At3g48640	824024	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
19.3	99.6	71.4	At2g35980	818171	YLS9 (YELLOW-LEAF-SPECIFIC GENE 9)	Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast.	O.I.	C.G.	H.G.
18.8	99.5	53.0	At2g29470	817496	ATGSTU3 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 3)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
18.7	99.5	226.8	At2g37710	818348	RLK (receptor lectin kinase)	Induced in response to Salicylic acid.	O.I.	C.G.	H.G.
18.7	99.5	44.4	At4g22530	828348	embryo-abundant protein-related	F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA	O.I.	C.G.	H.G.
18.4	99.5	65.9	At5g52810	835358	ornithine cyclodeaminase/mu-crystallin family protein	F:structural constituent of eye lens, binding, catalytic activity;P:arginine catabolic process to glutamate, nopaline catabolic process, metabolic process, octopine catabolic process;C:chloroplast;BOMAFP	O.I.	C.G.	H.G.
18.1	99.5	25.5	At1g32960	840190	SBT3.3	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, plant-type cell wall;BPOAFM	O.I.	C.G.	H.G.
17.8	99.5	264.2	At5g55450	835638	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:response to other organism, lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
17.8	99.5	257.4	At5g10760	830943	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFO	O.I.	C.G.	H.G.
17.7	99.5	86.6	At4g17260	827440	L-lactate dehydrogenase, putative	F:in 6 functions;P:response to salt stress, response to abscisic acid stimulus;C:plasma membrane;BOMFPA	O.I.	C.G.	H.G.
17.7	99.5	40.1	At1g03660	839033	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.6	99.5	133.6	At3g26830	822298	PAD3 (PHYTOALEXIN DEFICIENT 3)	Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin.	O.I.	C.G.	H.G.
17.2	99.5	112.9	At2g26440	817184	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
17.1	99.5	21.9	At5g55420	835635	-	Encodes a Protease inhibitor/seed storage/LTP family protein [pseudogene]	O.I.	C.G.	H.G.
14.4	99.4	23.1	At1g33030	840198	O-methyltransferase family 2 protein	F:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOM	O.I.	C.G.	H.G.
14.2	99.4	53.6	At3g60540	825225	sec61beta family protein	F:protein transporter activity;P:protein transport;C:unknown;MFPO	O.I.	C.G.	H.G.
14.2	99.4	52.8	At2g36790	818251	UGT73C6 (UDP-glucosyl transferase 73C6)	The At2g36790 gene encodes a UDP-glucose:flavonol-3-O-glycoside-7-O-glucosyltransferase (UGT73C6)attaching a glucosyl residue to the 7-O-position of the flavonols kaempferol, quercetin and their 3-O-glycoside derivatives.	O.I.	C.G.	H.G.
13.9	99.4	244.2	At1g52200	841650	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:plasma membrane;PFMO	O.I.	C.G.	H.G.
13.8	99.4	129.2	At5g13200	831159	GRAM domain-containing protein / ABA-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
13.4	99.4	124.2	At3g18250	821353	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMFO	O.I.	C.G.	H.G.
13.4	99.4	73.2	At1g67810	843107	SUFE2 (SULFUR E 2)	Encodes a protein capable of stimulating the cysteine desulfurase activity of CpNifS (AT1G08490) in vitro. SufE2:GFP localizes to the chloroplasts where it is likely to play a role in iron-sulfur cluster assembly. Transcript levels for this gene are high in the pollen relative to other organs based on RT-PCR analysis.	O.I.	C.G.	H.G.
12.9	99.3	102.7	At2g30550	817604	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;PFOBMV	O.I.	C.G.	H.G.
12.7	99.3	71.4	At3g27280	822347	ATPHB4 (PROHIBITIN 4)	Part of protein complexes that are necessary for proficient mitochondrial function or biogenesis, thereby supporting cell division and differentiation in apical tissues	O.I.	C.G.	H.G.
12.7	99.3	16.3	At1g69720	843308	ho3 (HEME OXYGENASE 3)	Encodes a member (HO3) of the heme oxygenase family.	O.I.	C.G.	H.G.
12.0	99.3	185.9	At5g26340	832703	MSS1	Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter appears to be negatively regulated by phosphorylation. Importantly, microarray analysis, as well as the study of the expression of this gene in mutants involved in programmed cell death (PCD) demonstrated a tight correlation between this gene's expression and PCD.	O.I.	C.G.	H.G.
11.9	99.3	284.7	At3g57260	824893	BGL2 (BETA-1,3-GLUCANASE 2)	beta 1,3-glucanase	O.I.	C.G.	H.G.
11.9	99.3	132.8	At1g17170	838288	ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
11.7	99.3	39.2	At3g61630	825336	CRF6 (CYTOKININ RESPONSE FACTOR 6)	CRF6 encodes one of the six cytokinin response factors. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves.	O.I.	C.G.	H.G.
11.5	99.3	322.7	At5g03350	831863	legume lectin family protein	F:carbohydrate binding, sugar binding;P:biological_process unknown;C:apoplast, cell wall, chloroplast;PBO	O.I.	C.G.	H.G.
11.3	99.3	142.9	At3g07390	819927	AIR12	isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.	O.I.	C.G.	H.G.
11.1	99.2	81.7	At5g39050	833897	transferase/ transferase, transferring acyl groups other than amino-acyl groups	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
10.9	99.2	102.7	At1g24807	839085	anthranilate synthase beta subunit, putative	F:catalytic activity, anthranilate synthase activity;P:glutamine metabolic process, biosynthetic process, metabolic process;C:chloroplast;BOFAMP	O.I.	C.G.	H.G.
10.7	99.2	188.8	At3g22370	821806	AOX1A (ALTERNATIVE OXIDASE 1A)	Encodes an isoform of alternative oxidase that is expressed in rosettes, flowers, and root. The alternative oxidase of plant mitochondria transfers electrons from the ubiquinone pool to oxygen without energy conservations. It is regulated through transcriptional control and by pyruvate. Plays a role in shoot acclimation to low temperature. Also is capable of ameliorating reactive oxygen species production when the cytochrome pathway is inhibited.	O.I.	C.G.	H.G.
10.7	99.2	67.7	At3g22060	821768	receptor protein kinase-related	contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069, however this protein does not have the protein kinase domain	O.I.	C.G.	H.G.
10.7	99.2	33.3	At1g73805	843716	calmodulin binding	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.6	99.2	57.4	At5g51830	835258	pfkB-type carbohydrate kinase family protein	F:kinase activity, ribokinase activity;P:response to cadmium ion;C:cellular_component unknown;BOPAMF	O.I.	C.G.	H.G.
10.6	99.2	49.0	At1g66590	842977	cox19 family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOP	O.I.	C.G.	H.G.
10.6	99.2	43.9	At1g65690	842880	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
10.6	99.2	10.5	At5g04330	830312	cytochrome P450, putative / ferulate-5-hydroxylase, putative	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:endomembrane system;MPFBOAV	O.I.	C.G.	H.G.
10.5	99.2	49.0	At1g32940	840188	SBT3.5	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOAFM	O.I.	C.G.	H.G.
10.5	99.2	47.4	At5g54610	835550	ANK (ankyrin)	Induced in response to Salicylic acid. Belongs to the ankyrin repeat protein family.	O.I.	C.G.	H.G.
10.5	99.2	18.7	At4g11370	826739	RHA1A	Encodes a putative RING-H2 finger protein RHA1a.	O.I.	C.G.	H.G.
10.3	99.2	29.4	At3g20590	821606	non-race specific disease resistance protein, putative	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.2	99.2	8.3	At2g38520	3767738	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
10.0	99.2	19.3	At3g03060	821146	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:cell wall, plant-type cell wall;OMBFPAV	O.I.	C.G.	H.G.
9.9	99.1	413.8	At2g14610	815949	PR1 (PATHOGENESIS-RELATED GENE 1)	PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called 'PR-1-like', the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive.	O.I.	C.G.	H.G.
9.7	99.1	152.4	At2g18690	816384	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;PB	O.I.	C.G.	H.G.
9.7	99.1	65.7	At5g51440	835218	23.5 kDa mitochondrial small heat shock protein (HSP23.5-M)	F:molecular_function unknown;P:response to heat;C:unknown;BPOAFM	O.I.	C.G.	H.G.
9.6	99.1	567.5	At1g14870	838052	-	F:molecular_function unknown;P:response to oxidative stress;C:plasma membrane;PMFO	O.I.	C.G.	H.G.
9.6	99.1	27.0	At2g39710	818555	aspartyl protease family protein	Encodes a Cysteine-rich peptide (CRP) family protein	O.I.	C.G.	H.G.
9.5	99.1	305.2	At2g14560	815943	LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)	Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica. LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5.	O.I.	C.G.	H.G.
9.5	99.1	84.3	At2g04040	814938	TX1	AtDTX1 (At2g04040) has been identified as a detoxifying efflux carrier for plant-derived antibiotics and other toxic compounds, including CD2+.	O.I.	C.G.	H.G.
9.5	99.1	23.7	At4g11000	826701	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA	O.I.	C.G.	H.G.
9.2	99.1	25.9	At1g28190	839713	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.
9.1	99.1	28.3	At2g20720	816600	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
8.9	99.0	177.5	At5g19240	832044	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
8.9	99.0	144.7	At5g24530	832524	DMR6 (DOWNY MILDEW RESISTANT 6)	Encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew.	O.I.	C.G.	H.G.
8.9	99.0	56.2	At3g26210	822222	CYP71B23	putative cytochrome P450	O.I.	C.G.	H.G.
8.6	99.0	58.0	At2g29350	817484	SAG13	senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase	O.I.	C.G.	H.G.
8.6	99.0	19.7	At4g39740	830129	electron transport SCO1/SenC family protein	F:molecular_function unknown;P:unknown;C:unknown;BOMFPA	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-TABM-60-raw-cel-680980342
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-TABM-60-raw-cel-680980342 GSE experiment -

GSM ID -

Assay name E-TABM-60-raw-cel-680980342

GSE experiment -