CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-TABM-52-raw-cel-1583683646

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
126.3 99.9 100.7 At4g29200 829041 beta-galactosidase F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P O.I. C.G. H.G.
21.2 99.6 306.4 At3g22840 821855 ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN) Encodes an early light-inducible protein. O.I. C.G. H.G.
21.0 99.6 143.6 At3g04550 819611 unknown protein F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPMO O.I. C.G. H.G.
20.9 99.6 40.8 At1g71050 843445 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PFBM O.I. C.G. H.G.
19.1 99.6 34.5 At1g78450 844181 SOUL heme-binding family protein F:binding;P:biological_process unknown;C:endomembrane system;OMPBA O.I. C.G. H.G.
18.8 99.5 55.5 At2g21320 816671 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM O.I. C.G. H.G.
18.5 99.5 18.3 At3g28320 822460 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
16.2 99.5 35.4 At3g44430 823568 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
16.0 99.5 472.5 At2g42540 818854 COR15A (COLD-REGULATED 15A) A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope. O.I. C.G. H.G.
15.7 99.5 140.3 At5g36910 833659 THI2.2 (THIONIN 2.2) Encodes a thionin that is expressed at a low basal level in seedlings and shows circadian variation. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. O.I. C.G. H.G.
14.6 99.4 38.2 At5g64050 836526 ERS (GLUTAMATE TRNA SYNTHETASE) Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana. O.I. C.G. H.G.
14.0 99.4 349.3 At1g75040 843842 PR5 (PATHOGENESIS-RELATED GENE 5) Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment. O.I. C.G. H.G.
13.5 99.4 54.4 At4g39960 830157 DNAJ heat shock family protein F:unfolded protein binding, heat shock protein binding, ATP binding;P:protein folding, response to heat;C:chloroplast thylakoid membrane, chloroplast;OBMFPAV O.I. C.G. H.G.
12.2 99.3 460.2 At2g14610 815949 PR1 (PATHOGENESIS-RELATED GENE 1) PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called 'PR-1-like', the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive. O.I. C.G. H.G.
11.5 99.3 17.5 At5g55580 835652 mitochondrial transcription termination factor family protein / mTERF family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOFVB O.I. C.G. H.G.
10.5 99.2 24.7 At4g30720 829195 electron carrier/ oxidoreductase F:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast;BOAPF O.I. C.G. H.G.
10.4 99.2 36.1 At5g15360 831388 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.0 99.2 206.7 At2g42530 818853 COR15B (COLD REGULATED 15B) F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF O.I. C.G. H.G.
10.0 99.2 44.6 At2g35960 818169 NHL12 Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine. O.I. C.G. H.G.
9.9 99.1 59.2 At5g42900 834301 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.7 99.1 197.8 At4g14690 827119 ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2) Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis. O.I. C.G. H.G.
9.0 99.1 57.3 At5g24460 832517 unknown protein F:unknown;P:biological_process unknown;C:cell wall;PFO O.I. C.G. H.G.
8.9 99.0 348.2 At4g12470 826859 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:defense response to fungus, lipid transport;C:endomembrane system;PBOVMFA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
126.3	99.9	100.7	At4g29200	829041	beta-galactosidase	F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P	O.I.	C.G.	H.G.
21.2	99.6	306.4	At3g22840	821855	ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN)	Encodes an early light-inducible protein.	O.I.	C.G.	H.G.
21.0	99.6	143.6	At3g04550	819611	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPMO	O.I.	C.G.	H.G.
20.9	99.6	40.8	At1g71050	843445	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PFBM	O.I.	C.G.	H.G.
19.1	99.6	34.5	At1g78450	844181	SOUL heme-binding family protein	F:binding;P:biological_process unknown;C:endomembrane system;OMPBA	O.I.	C.G.	H.G.
18.8	99.5	55.5	At2g21320	816671	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM	O.I.	C.G.	H.G.
18.5	99.5	18.3	At3g28320	822460	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
16.2	99.5	35.4	At3g44430	823568	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
16.0	99.5	472.5	At2g42540	818854	COR15A (COLD-REGULATED 15A)	A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.	O.I.	C.G.	H.G.
15.7	99.5	140.3	At5g36910	833659	THI2.2 (THIONIN 2.2)	Encodes a thionin that is expressed at a low basal level in seedlings and shows circadian variation. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	O.I.	C.G.	H.G.
14.6	99.4	38.2	At5g64050	836526	ERS (GLUTAMATE TRNA SYNTHETASE)	Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.	O.I.	C.G.	H.G.
14.0	99.4	349.3	At1g75040	843842	PR5 (PATHOGENESIS-RELATED GENE 5)	Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment.	O.I.	C.G.	H.G.
13.5	99.4	54.4	At4g39960	830157	DNAJ heat shock family protein	F:unfolded protein binding, heat shock protein binding, ATP binding;P:protein folding, response to heat;C:chloroplast thylakoid membrane, chloroplast;OBMFPAV	O.I.	C.G.	H.G.
12.2	99.3	460.2	At2g14610	815949	PR1 (PATHOGENESIS-RELATED GENE 1)	PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called 'PR-1-like', the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive.	O.I.	C.G.	H.G.
11.5	99.3	17.5	At5g55580	835652	mitochondrial transcription termination factor family protein / mTERF family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
10.5	99.2	24.7	At4g30720	829195	electron carrier/ oxidoreductase	F:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast;BOAPF	O.I.	C.G.	H.G.
10.4	99.2	36.1	At5g15360	831388	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.0	99.2	206.7	At2g42530	818853	COR15B (COLD REGULATED 15B)	F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF	O.I.	C.G.	H.G.
10.0	99.2	44.6	At2g35960	818169	NHL12	Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine.	O.I.	C.G.	H.G.
9.9	99.1	59.2	At5g42900	834301	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.7	99.1	197.8	At4g14690	827119	ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)	Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis.	O.I.	C.G.	H.G.
9.0	99.1	57.3	At5g24460	832517	unknown protein	F:unknown;P:biological_process unknown;C:cell wall;PFO	O.I.	C.G.	H.G.
8.9	99.0	348.2	At4g12470	826859	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:defense response to fungus, lipid transport;C:endomembrane system;PBOVMFA	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-TABM-52-raw-cel-1583683646
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-TABM-52-raw-cel-1583683646 GSE experiment -

GSM ID -

Assay name E-TABM-52-raw-cel-1583683646

GSE experiment -