CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-TABM-52-raw-cel-1583683342

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
134.4 99.9 243.7 At2g15560 816049 - F:unknown;P:response to oxidative stress;C:cellular_component unknown;PMFBO O.I. C.G. H.G.
107.7 99.9 24.8 At5g03090 831803 unknown protein F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
74.1 99.9 26.3 At1g70010 3767683 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
66.3 99.8 126.3 At5g10140 830878 FLC (FLOWERING LOCUS C) MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3’ to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex. O.I. C.G. H.G.
52.8 99.8 53.4 At2g03530 814882 UPS2 (UREIDE PERMEASE 2) Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport. O.I. C.G. H.G.
44.7 99.8 96.3 At1g02300 839576 cathepsin B-like cysteine protease, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
40.2 99.8 41.5 At2g19850 816504 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PMVO O.I. C.G. H.G.
36.8 99.7 130.6 At1g56600 842114 AtGolS2 (Arabidopsis thaliana galactinol synthase 2) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO O.I. C.G. H.G.
36.7 99.7 125.3 At2g18050 816317 HIS1-3 (HISTONE H1-3) encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA. O.I. C.G. H.G.
35.6 99.7 13.7 At2g22920 816823 serine carboxypeptidase S10 family protein F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFBO O.I. C.G. H.G.
33.7 99.7 139.1 At3g50740 824238 UGT72E1 (UDP-glucosyl transferase 72E1) UGT72E1 is an UDPG:coniferyl alcohol glucosyltransferase which specifically glucosylates sinapyl- and coniferyl aldehydes. The enzyme is thought to be involved in lignin metabolism. O.I. C.G. H.G.
33.4 99.7 17.9 At1g59670 842257 ATGSTU15 (GLUTATHIONE S-TRANSFERASE TAU 15) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
33.0 99.7 211.4 At4g03060 828102 AOP2 (ALKENYL HYDROXALKYL PRODUCING 2) Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis. O.I. C.G. H.G.
32.9 99.7 135.5 At1g52410 841671 TSA1 (TSK-ASSOCIATING PROTEIN 1) Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers. O.I. C.G. H.G.
32.5 99.7 54.1 At2g35820 818155 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO O.I. C.G. H.G.
29.7 99.7 53.6 At2g47880 819400 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO O.I. C.G. H.G.
29.5 99.7 32.7 At1g28610 839761 GDSL-motif lipase, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBM O.I. C.G. H.G.
29.4 99.7 20.7 At2g15040 3768475 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
27.5 99.7 121.6 At1g66690 842987 S-adenosyl-L-methionine:carboxyl methyltransferase family protein F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF O.I. C.G. H.G.
26.0 99.7 71.0 At5g19460 832066 atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20) F:hydrolase activity;P:biological_process unknown;C:chloroplast;BFOMP O.I. C.G. H.G.
25.6 99.7 272.0 At2g43590 818961 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV O.I. C.G. H.G.
25.5 99.7 134.3 At3g28270 822453 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMPOAFV O.I. C.G. H.G.
25.4 99.6 172.2 At1g80130 844353 binding F:binding;P:response to oxidative stress;C:membrane;BPOMFAV O.I. C.G. H.G.
23.7 99.6 108.9 At1g21130 838709 O-methyltransferase, putative F:methyltransferase activity, protein dimerization activity, O-methyltransferase activity;P:unknown;C:cytosol;PBFOM O.I. C.G. H.G.
23.4 99.6 26.4 At1g18710 838453 AtMYB47 (myb domain protein 47) Member of the R2R3 factor gene family. O.I. C.G. H.G.
22.6 99.6 75.8 At4g14090 827046 UDP-glucoronosyl/UDP-glucosyl transferase family protein The At4g14090 encodes a anthocyanidin 5-O-glucosyltransferase specifically glucosylating the 5-position of the flavonoid A-ring. O.I. C.G. H.G.
22.4 99.6 49.8 At4g16770 827383 iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:peroxisome;POBFM O.I. C.G. H.G.
22.2 99.6 162.0 At3g52180 824383 SEX4 (STARCH-EXCESS 4) Encodes a plant-specific protein phosphatase that contains a protein tyrosine phosphatase (PTP) catalytic domain and a kinase interaction sequence (KIS) domain. This protein interacts with the plant SnRK AKIN11. Binds starch. Localized in the chloroplast. O.I. C.G. H.G.
21.7 99.6 102.9 At4g09020 826481 ISA3 (ISOAMYLASE 3) Encodes an isoamylase-like protein. Mutant studies show that the gene is strongly involved in starch breakdown. A GUS-protein fusion product was shown to localize to the surface of chloroplastic structures reminiscent of starch granules. In the mutants, the chloroplastic α-amylase AMY3 is upregulated. O.I. C.G. H.G.
21.4 99.6 71.4 At1g11210 837662 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO O.I. C.G. H.G.
21.1 99.6 31.2 At3g52710 824437 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
20.8 99.6 21.8 At2g22910 816822 GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein F:amino-acid N-acetyltransferase activity, N-acetyltransferase activity;P:arginine biosynthetic process, amino acid biosynthetic process, metabolic process;C:cytoplasm;BOAFP O.I. C.G. H.G.
20.0 99.6 66.8 At3g26280 822231 CYP71B4 cytochrome P450 monooxygenase O.I. C.G. H.G.
19.7 99.6 17.2 At5g25120 832583 CYP71B11 putative cytochrome P450 O.I. C.G. H.G.
18.8 99.5 57.1 At1g02340 839300 HFR1 (LONG HYPOCOTYL IN FAR-RED) Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1. O.I. C.G. H.G.
18.8 99.5 18.8 At3g29590 822623 AT5MAT At3g29590 (At5MAT) encodes a malonyl-CoA:anthocyanidin 5-O-glucoside-6"-O-malonyltransferase that is coordinately expressed with a epistatic 5-O-anthocyanidin glucosyltransferase (At4g14090). The enzyme is involved in the malonylation of anthocyanins in Arabidopsis. O.I. C.G. H.G.
18.5 99.5 96.9 At5g17220 831586 ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems. O.I. C.G. H.G.
18.3 99.5 477.4 At4g32940 829431 GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME) Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death. O.I. C.G. H.G.
18.2 99.5 70.7 At5g45380 834574 sodium:solute symporter family protein F:urea transmembrane transporter activity, solute:sodium symporter activity;P:cellular response to nitrogen starvation;C:plasma membrane;BOMFAP O.I. C.G. H.G.
17.8 99.5 45.7 At3g03870 821099 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
17.6 99.5 5.6 At1g67000 843018 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
17.5 99.5 39.8 At5g16380 831499 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
17.4 99.5 85.9 At5g18130 831931 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.3 99.5 17.6 At3g28320 822460 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
16.8 99.5 148.7 At5g23240 832388 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV O.I. C.G. H.G.
16.8 99.5 21.7 At5g43800 3771423 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
16.5 99.5 63.8 At1g33970 840294 avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative F:GTP binding;P:response to bacterium;C:cellular_component unknown;OMBFPAV O.I. C.G. H.G.
16.4 99.5 34.5 At3g18370 821366 ATSYTF F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOF O.I. C.G. H.G.
16.1 99.5 64.7 At4g27300 828838 S-locus protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
16.1 99.5 12.3 At2g03540 814883 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
16.0 99.5 146.7 At2g32520 817813 dienelactone hydrolase family protein F:hydrolase activity;P:biological_process unknown;C:chloroplast;BOMPAF O.I. C.G. H.G.
15.9 99.5 14.0 At4g22950 828394 AGL19 (AGAMOUS-LIKE 19) MADS-box protein AGL19 O.I. C.G. H.G.
15.8 99.5 30.9 At1g77810 844443 galactosyltransferase family protein F:transferase activity, transferring glycosyl groups, beta-1,3-galactosyltransferase activity;P:protein amino acid glycosylation;C:Golgi apparatus;MPOB O.I. C.G. H.G.
15.7 99.5 71.5 At1g56120 842064 kinase F:kinase activity;P:protein amino acid phosphorylation;C:unknown;PMOBFVA O.I. C.G. H.G.
15.7 99.5 16.0 At1g21240 838719 WAK3 (wall associated kinase 3) encodes a wall-associated kinase O.I. C.G. H.G.
15.6 99.5 79.0 At1g50290 841451 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cytosol;P O.I. C.G. H.G.
15.5 99.5 18.8 At3g19350 821469 MPC (MATERNALLY EXPRESSED PAB C-TERMINAL) Encodes a the C-terminal domain of poly(A) binding proteins. MPC is imprinted such that only the maternal allele is expressed in the endosperm. MPC is silenced by the action of MET1 and its expression is promoted by DEM. O.I. C.G. H.G.
15.3 99.4 26.3 At4g15260 827192 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF O.I. C.G. H.G.
15.2 99.4 51.7 At5g61520 836273 hexose transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA O.I. C.G. H.G.
14.9 99.4 88.4 At4g12280 826837 copper amine oxidase family protein F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:cellular_component unknown;FBMOPA O.I. C.G. H.G.
14.7 99.4 58.0 At1g07090 837220 LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
14.7 99.4 17.1 At1g78270 844162 AtUGT85A4 (UDP-glucosyl transferase 85A4) F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, glucuronosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMVBFO O.I. C.G. H.G.
14.2 99.4 69.0 At1g76590 843992 zinc-binding family protein F:binding;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
14.2 99.4 19.9 At1g11350 837677 SD1-13 (S-DOMAIN-1 13) F:protein serine/threonine kinase activity, protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
14.2 99.4 7.6 At5g66630 836795 DAR5 (DA1-RELATED PROTEIN 5) F:zinc ion binding;P:unknown;C:unknown;PMOBF O.I. C.G. H.G.
14.0 99.4 15.8 At5g39030 833895 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
13.7 99.4 70.0 At4g13840 827018 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PF O.I. C.G. H.G.
13.4 99.4 208.2 At1g52030 841632 MBP2 (MYROSINASE-BINDING PROTEIN 2) Similar to myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers. O.I. C.G. H.G.
13.4 99.4 66.6 At1g28370 839733 ERF11 (ERF DOMAIN PROTEIN 11) encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. O.I. C.G. H.G.
13.0 99.4 29.6 At1g13950 837955 ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced. O.I. C.G. H.G.
13.0 99.4 10.1 At1g52800 841713 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
12.9 99.3 67.3 At4g18880 827622 AT-HSFA4A member of Heat Stress Transcription Factor (Hsf) family O.I. C.G. H.G.
12.9 99.3 49.6 At5g50160 835081 FRO8 (FERRIC REDUCTION OXIDASE 8) Encodes a ferric chelate reductase that is expressed in shoots and flowers. O.I. C.G. H.G.
12.9 99.3 21.2 At3g45290 823667 MLO3 (MILDEW RESISTANCE LOCUS O 3) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO3 belongs to the clade IV, with AtMLO2, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in primary root and lateral root primordia, in fruit abscission zone, in vascular system of cotyledons and in trichomes of young leaves,; it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). O.I. C.G. H.G.
12.8 99.3 153.4 At5g54960 835587 PDC2 (pyruvate decarboxylase-2) pyruvate decarboxylase-2 O.I. C.G. H.G.
12.6 99.3 35.9 At5g60900 836211 RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1) Encodes a receptor-like protein kinase. O.I. C.G. H.G.
12.4 99.3 133.8 At3g48640 824024 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
12.2 99.3 56.9 At5g16570 831519 GLN1 Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium O.I. C.G. H.G.
12.2 99.3 38.2 At4g16780 827384 ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2) Encodes a homeodomain-leucine zipper protein that is rapidly and strongly induced by changes in the ratio of red to far-red light. It is also involved in cell expansion and cell proliferation and in the response to auxin. O.I. C.G. H.G.
12.1 99.3 26.8 At5g60100 836132 APRR3 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 3) Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL. O.I. C.G. H.G.
12.0 99.3 20.5 At3g14020 820616 NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFO O.I. C.G. H.G.
11.8 99.3 30.5 At1g08890 837410 sugar transporter family protein F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:chloroplast, membrane;MFBPOA O.I. C.G. H.G.
11.8 99.3 21.6 At1g08230 837344 - - O.I. C.G. H.G.
11.5 99.3 9.5 At3g27650 822387 LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25) F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.4 99.3 44.8 At3g27210 822340 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;MPOBF O.I. C.G. H.G.
11.2 99.2 31.6 At4g39210 830076 APL3 Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL3 is the major large subunit isoform present in inflorescences, fruits and roots. O.I. C.G. H.G.
11.1 99.2 67.1 At1g22070 838812 TGA3 Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties. O.I. C.G. H.G.
11.1 99.2 29.9 At2g23680 816899 stress-responsive protein, putative F:molecular_function unknown;P:response to stress;C:membrane;P O.I. C.G. H.G.
11.0 99.2 115.4 At2g19810 816500 zinc finger (CCCH-type) family protein F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;POM O.I. C.G. H.G.
10.9 99.2 196.9 At1g10760 837619 SEX1 (STARCH EXCESS 1) Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position. O.I. C.G. H.G.
10.9 99.2 49.7 At2g33050 817867 AtRLP26 (Receptor Like Protein 26) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
10.8 99.2 245.2 At3g46970 823850 PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2) Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen. O.I. C.G. H.G.
10.8 99.2 42.3 At2g31110 817667 unknown protein F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
10.7 99.2 44.9 At1g18570 838438 MYB51 (MYB DOMAIN PROTEIN 51) Encodes a member of the R2R3-MYB transcription family. Involved in indole glucosinolate biosynthesis. O.I. C.G. H.G.
10.6 99.2 72.6 At4g27560 828865 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:response to salt stress, N-terminal protein myristoylation;C:cellular_component unknown;PMBFOV O.I. C.G. H.G.
10.6 99.2 53.6 At3g27300 822349 G6PD5 (glucose-6-phosphate dehydrogenase 5) F:glucose-6-phosphate dehydrogenase activity;P:response to cadmium ion, pentose-phosphate shunt, oxidative branch, glucose metabolic process;C:cytosol, chloroplast;BOMPFV O.I. C.G. H.G.
10.6 99.2 30.9 At5g58390 835952 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
10.6 99.2 20.5 At3g21790 821733 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMBOVF O.I. C.G. H.G.
10.5 99.2 24.9 At3g57680 824937 peptidase S41 family protein F:serine-type peptidase activity, protein binding;P:proteolysis, intracellular signaling cascade;C:chloroplast thylakoid lumen, membrane;OBPM O.I. C.G. H.G.
10.4 99.2 25.5 At1g78450 844181 SOUL heme-binding family protein F:binding;P:biological_process unknown;C:endomembrane system;OMPBA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
134.4	99.9	243.7	At2g15560	816049	-	F:unknown;P:response to oxidative stress;C:cellular_component unknown;PMFBO	O.I.	C.G.	H.G.
107.7	99.9	24.8	At5g03090	831803	unknown protein	F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
74.1	99.9	26.3	At1g70010	3767683	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
66.3	99.8	126.3	At5g10140	830878	FLC (FLOWERING LOCUS C)	MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3’ to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.	O.I.	C.G.	H.G.
52.8	99.8	53.4	At2g03530	814882	UPS2 (UREIDE PERMEASE 2)	Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport.	O.I.	C.G.	H.G.
44.7	99.8	96.3	At1g02300	839576	cathepsin B-like cysteine protease, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
40.2	99.8	41.5	At2g19850	816504	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMVO	O.I.	C.G.	H.G.
36.8	99.7	130.6	At1g56600	842114	AtGolS2 (Arabidopsis thaliana galactinol synthase 2)	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO	O.I.	C.G.	H.G.
36.7	99.7	125.3	At2g18050	816317	HIS1-3 (HISTONE H1-3)	encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.	O.I.	C.G.	H.G.
35.6	99.7	13.7	At2g22920	816823	serine carboxypeptidase S10 family protein	F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFBO	O.I.	C.G.	H.G.
33.7	99.7	139.1	At3g50740	824238	UGT72E1 (UDP-glucosyl transferase 72E1)	UGT72E1 is an UDPG:coniferyl alcohol glucosyltransferase which specifically glucosylates sinapyl- and coniferyl aldehydes. The enzyme is thought to be involved in lignin metabolism.	O.I.	C.G.	H.G.
33.4	99.7	17.9	At1g59670	842257	ATGSTU15 (GLUTATHIONE S-TRANSFERASE TAU 15)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
33.0	99.7	211.4	At4g03060	828102	AOP2 (ALKENYL HYDROXALKYL PRODUCING 2)	Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis.	O.I.	C.G.	H.G.
32.9	99.7	135.5	At1g52410	841671	TSA1 (TSK-ASSOCIATING PROTEIN 1)	Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers.	O.I.	C.G.	H.G.
32.5	99.7	54.1	At2g35820	818155	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
29.7	99.7	53.6	At2g47880	819400	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
29.5	99.7	32.7	At1g28610	839761	GDSL-motif lipase, putative	F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBM	O.I.	C.G.	H.G.
29.4	99.7	20.7	At2g15040	3768475	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
27.5	99.7	121.6	At1g66690	842987	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF	O.I.	C.G.	H.G.
26.0	99.7	71.0	At5g19460	832066	atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20)	F:hydrolase activity;P:biological_process unknown;C:chloroplast;BFOMP	O.I.	C.G.	H.G.
25.6	99.7	272.0	At2g43590	818961	chitinase, putative	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV	O.I.	C.G.	H.G.
25.5	99.7	134.3	At3g28270	822453	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMPOAFV	O.I.	C.G.	H.G.
25.4	99.6	172.2	At1g80130	844353	binding	F:binding;P:response to oxidative stress;C:membrane;BPOMFAV	O.I.	C.G.	H.G.
23.7	99.6	108.9	At1g21130	838709	O-methyltransferase, putative	F:methyltransferase activity, protein dimerization activity, O-methyltransferase activity;P:unknown;C:cytosol;PBFOM	O.I.	C.G.	H.G.
23.4	99.6	26.4	At1g18710	838453	AtMYB47 (myb domain protein 47)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
22.6	99.6	75.8	At4g14090	827046	UDP-glucoronosyl/UDP-glucosyl transferase family protein	The At4g14090 encodes a anthocyanidin 5-O-glucosyltransferase specifically glucosylating the 5-position of the flavonoid A-ring.	O.I.	C.G.	H.G.
22.4	99.6	49.8	At4g16770	827383	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:peroxisome;POBFM	O.I.	C.G.	H.G.
22.2	99.6	162.0	At3g52180	824383	SEX4 (STARCH-EXCESS 4)	Encodes a plant-specific protein phosphatase that contains a protein tyrosine phosphatase (PTP) catalytic domain and a kinase interaction sequence (KIS) domain. This protein interacts with the plant SnRK AKIN11. Binds starch. Localized in the chloroplast.	O.I.	C.G.	H.G.
21.7	99.6	102.9	At4g09020	826481	ISA3 (ISOAMYLASE 3)	Encodes an isoamylase-like protein. Mutant studies show that the gene is strongly involved in starch breakdown. A GUS-protein fusion product was shown to localize to the surface of chloroplastic structures reminiscent of starch granules. In the mutants, the chloroplastic α-amylase AMY3 is upregulated.	O.I.	C.G.	H.G.
21.4	99.6	71.4	At1g11210	837662	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO	O.I.	C.G.	H.G.
21.1	99.6	31.2	At3g52710	824437	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
20.8	99.6	21.8	At2g22910	816822	GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein	F:amino-acid N-acetyltransferase activity, N-acetyltransferase activity;P:arginine biosynthetic process, amino acid biosynthetic process, metabolic process;C:cytoplasm;BOAFP	O.I.	C.G.	H.G.
20.0	99.6	66.8	At3g26280	822231	CYP71B4	cytochrome P450 monooxygenase	O.I.	C.G.	H.G.
19.7	99.6	17.2	At5g25120	832583	CYP71B11	putative cytochrome P450	O.I.	C.G.	H.G.
18.8	99.5	57.1	At1g02340	839300	HFR1 (LONG HYPOCOTYL IN FAR-RED)	Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1.	O.I.	C.G.	H.G.
18.8	99.5	18.8	At3g29590	822623	AT5MAT	At3g29590 (At5MAT) encodes a malonyl-CoA:anthocyanidin 5-O-glucoside-6"-O-malonyltransferase that is coordinately expressed with a epistatic 5-O-anthocyanidin glucosyltransferase (At4g14090). The enzyme is involved in the malonylation of anthocyanins in Arabidopsis.	O.I.	C.G.	H.G.
18.5	99.5	96.9	At5g17220	831586	ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12)	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems.	O.I.	C.G.	H.G.
18.3	99.5	477.4	At4g32940	829431	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death.	O.I.	C.G.	H.G.
18.2	99.5	70.7	At5g45380	834574	sodium:solute symporter family protein	F:urea transmembrane transporter activity, solute:sodium symporter activity;P:cellular response to nitrogen starvation;C:plasma membrane;BOMFAP	O.I.	C.G.	H.G.
17.8	99.5	45.7	At3g03870	821099	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
17.6	99.5	5.6	At1g67000	843018	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
17.5	99.5	39.8	At5g16380	831499	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
17.4	99.5	85.9	At5g18130	831931	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.3	99.5	17.6	At3g28320	822460	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
16.8	99.5	148.7	At5g23240	832388	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV	O.I.	C.G.	H.G.
16.8	99.5	21.7	At5g43800	3771423	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
16.5	99.5	63.8	At1g33970	840294	avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative	F:GTP binding;P:response to bacterium;C:cellular_component unknown;OMBFPAV	O.I.	C.G.	H.G.
16.4	99.5	34.5	At3g18370	821366	ATSYTF	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOF	O.I.	C.G.	H.G.
16.1	99.5	64.7	At4g27300	828838	S-locus protein kinase, putative	F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
16.1	99.5	12.3	At2g03540	814883	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
16.0	99.5	146.7	At2g32520	817813	dienelactone hydrolase family protein	F:hydrolase activity;P:biological_process unknown;C:chloroplast;BOMPAF	O.I.	C.G.	H.G.
15.9	99.5	14.0	At4g22950	828394	AGL19 (AGAMOUS-LIKE 19)	MADS-box protein AGL19	O.I.	C.G.	H.G.
15.8	99.5	30.9	At1g77810	844443	galactosyltransferase family protein	F:transferase activity, transferring glycosyl groups, beta-1,3-galactosyltransferase activity;P:protein amino acid glycosylation;C:Golgi apparatus;MPOB	O.I.	C.G.	H.G.
15.7	99.5	71.5	At1g56120	842064	kinase	F:kinase activity;P:protein amino acid phosphorylation;C:unknown;PMOBFVA	O.I.	C.G.	H.G.
15.7	99.5	16.0	At1g21240	838719	WAK3 (wall associated kinase 3)	encodes a wall-associated kinase	O.I.	C.G.	H.G.
15.6	99.5	79.0	At1g50290	841451	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:cytosol;P	O.I.	C.G.	H.G.
15.5	99.5	18.8	At3g19350	821469	MPC (MATERNALLY EXPRESSED PAB C-TERMINAL)	Encodes a the C-terminal domain of poly(A) binding proteins. MPC is imprinted such that only the maternal allele is expressed in the endosperm. MPC is silenced by the action of MET1 and its expression is promoted by DEM.	O.I.	C.G.	H.G.
15.3	99.4	26.3	At4g15260	827192	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF	O.I.	C.G.	H.G.
15.2	99.4	51.7	At5g61520	836273	hexose transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA	O.I.	C.G.	H.G.
14.9	99.4	88.4	At4g12280	826837	copper amine oxidase family protein	F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:cellular_component unknown;FBMOPA	O.I.	C.G.	H.G.
14.7	99.4	58.0	At1g07090	837220	LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
14.7	99.4	17.1	At1g78270	844162	AtUGT85A4 (UDP-glucosyl transferase 85A4)	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, glucuronosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMVBFO	O.I.	C.G.	H.G.
14.2	99.4	69.0	At1g76590	843992	zinc-binding family protein	F:binding;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
14.2	99.4	19.9	At1g11350	837677	SD1-13 (S-DOMAIN-1 13)	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
14.2	99.4	7.6	At5g66630	836795	DAR5 (DA1-RELATED PROTEIN 5)	F:zinc ion binding;P:unknown;C:unknown;PMOBF	O.I.	C.G.	H.G.
14.0	99.4	15.8	At5g39030	833895	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
13.7	99.4	70.0	At4g13840	827018	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PF	O.I.	C.G.	H.G.
13.4	99.4	208.2	At1g52030	841632	MBP2 (MYROSINASE-BINDING PROTEIN 2)	Similar to myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers.	O.I.	C.G.	H.G.
13.4	99.4	66.6	At1g28370	839733	ERF11 (ERF DOMAIN PROTEIN 11)	encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.	O.I.	C.G.	H.G.
13.0	99.4	29.6	At1g13950	837955	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced.	O.I.	C.G.	H.G.
13.0	99.4	10.1	At1g52800	841713	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
12.9	99.3	67.3	At4g18880	827622	AT-HSFA4A	member of Heat Stress Transcription Factor (Hsf) family	O.I.	C.G.	H.G.
12.9	99.3	49.6	At5g50160	835081	FRO8 (FERRIC REDUCTION OXIDASE 8)	Encodes a ferric chelate reductase that is expressed in shoots and flowers.	O.I.	C.G.	H.G.
12.9	99.3	21.2	At3g45290	823667	MLO3 (MILDEW RESISTANCE LOCUS O 3)	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO3 belongs to the clade IV, with AtMLO2, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in primary root and lateral root primordia, in fruit abscission zone, in vascular system of cotyledons and in trichomes of young leaves,; it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	O.I.	C.G.	H.G.
12.8	99.3	153.4	At5g54960	835587	PDC2 (pyruvate decarboxylase-2)	pyruvate decarboxylase-2	O.I.	C.G.	H.G.
12.6	99.3	35.9	At5g60900	836211	RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1)	Encodes a receptor-like protein kinase.	O.I.	C.G.	H.G.
12.4	99.3	133.8	At3g48640	824024	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
12.2	99.3	56.9	At5g16570	831519	GLN1	Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium	O.I.	C.G.	H.G.
12.2	99.3	38.2	At4g16780	827384	ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2)	Encodes a homeodomain-leucine zipper protein that is rapidly and strongly induced by changes in the ratio of red to far-red light. It is also involved in cell expansion and cell proliferation and in the response to auxin.	O.I.	C.G.	H.G.
12.1	99.3	26.8	At5g60100	836132	APRR3 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 3)	Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.	O.I.	C.G.	H.G.
12.0	99.3	20.5	At3g14020	820616	NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFO	O.I.	C.G.	H.G.
11.8	99.3	30.5	At1g08890	837410	sugar transporter family protein	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:chloroplast, membrane;MFBPOA	O.I.	C.G.	H.G.
11.8	99.3	21.6	At1g08230	837344	-	-	O.I.	C.G.	H.G.
11.5	99.3	9.5	At3g27650	822387	LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25)	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.4	99.3	44.8	At3g27210	822340	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;MPOBF	O.I.	C.G.	H.G.
11.2	99.2	31.6	At4g39210	830076	APL3	Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL3 is the major large subunit isoform present in inflorescences, fruits and roots.	O.I.	C.G.	H.G.
11.1	99.2	67.1	At1g22070	838812	TGA3	Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties.	O.I.	C.G.	H.G.
11.1	99.2	29.9	At2g23680	816899	stress-responsive protein, putative	F:molecular_function unknown;P:response to stress;C:membrane;P	O.I.	C.G.	H.G.
11.0	99.2	115.4	At2g19810	816500	zinc finger (CCCH-type) family protein	F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;POM	O.I.	C.G.	H.G.
10.9	99.2	196.9	At1g10760	837619	SEX1 (STARCH EXCESS 1)	Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.	O.I.	C.G.	H.G.
10.9	99.2	49.7	At2g33050	817867	AtRLP26 (Receptor Like Protein 26)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
10.8	99.2	245.2	At3g46970	823850	PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2)	Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen.	O.I.	C.G.	H.G.
10.8	99.2	42.3	At2g31110	817667	unknown protein	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
10.7	99.2	44.9	At1g18570	838438	MYB51 (MYB DOMAIN PROTEIN 51)	Encodes a member of the R2R3-MYB transcription family. Involved in indole glucosinolate biosynthesis.	O.I.	C.G.	H.G.
10.6	99.2	72.6	At4g27560	828865	glycosyltransferase family protein	F:transferase activity, transferring glycosyl groups;P:response to salt stress, N-terminal protein myristoylation;C:cellular_component unknown;PMBFOV	O.I.	C.G.	H.G.
10.6	99.2	53.6	At3g27300	822349	G6PD5 (glucose-6-phosphate dehydrogenase 5)	F:glucose-6-phosphate dehydrogenase activity;P:response to cadmium ion, pentose-phosphate shunt, oxidative branch, glucose metabolic process;C:cytosol, chloroplast;BOMPFV	O.I.	C.G.	H.G.
10.6	99.2	30.9	At5g58390	835952	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
10.6	99.2	20.5	At3g21790	821733	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMBOVF	O.I.	C.G.	H.G.
10.5	99.2	24.9	At3g57680	824937	peptidase S41 family protein	F:serine-type peptidase activity, protein binding;P:proteolysis, intracellular signaling cascade;C:chloroplast thylakoid lumen, membrane;OBPM	O.I.	C.G.	H.G.
10.4	99.2	25.5	At1g78450	844181	SOUL heme-binding family protein	F:binding;P:biological_process unknown;C:endomembrane system;OMPBA	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-TABM-52-raw-cel-1583683342
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-TABM-52-raw-cel-1583683342 GSE experiment -

GSM ID -

Assay name E-TABM-52-raw-cel-1583683342

GSE experiment -