Microarray experiments to specifically-expressed genes

Assay name E-TABM-52-raw-cel-1583683214
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
126.799.947.7At3g28320822460-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
85.599.9145.5At5g25110832582CIPK25 (CBL-INTERACTING PROTEIN KINASE 25)member of AtCIPKsO.I.C.G.H.G.
77.999.923.7At5g09470830806mitochondrial substrate carrier family proteinF:oxidative phosphorylation uncoupler activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOVO.I.C.G.H.G.
76.099.932.4At5g41660834168unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
74.999.9133.7At1g11210837662unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;POO.I.C.G.H.G.
72.399.9187.9At4g09020826481ISA3 (ISOAMYLASE 3)Encodes an isoamylase-like protein. Mutant studies show that the gene is strongly involved in starch breakdown. A GUS-protein fusion product was shown to localize to the surface of chloroplastic structures reminiscent of starch granules. In the mutants, the chloroplastic α-amylase AMY3 is upregulated.O.I.C.G.H.G.
39.299.821.2At3g28310822458-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
36.999.754.4At4g29200829041beta-galactosidaseF:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;PO.I.C.G.H.G.
32.499.7379.1At3g22840821855ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN)Encodes an early light-inducible protein.O.I.C.G.H.G.
29.199.723.6At3g55580824723regulator of chromosome condensation (RCC1) family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAVO.I.C.G.H.G.
28.799.724.4At3g52820824448PAP22 (PURPLE ACID PHOSPHATASE 22)F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMFAO.I.C.G.H.G.
26.099.7124.3At3g57240824891BG3 (BETA-1,3-GLUCANASE 3)encodes a member of glycosyl hydrolase family 17O.I.C.G.H.G.
25.199.664.2At2g21320816671zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POMO.I.C.G.H.G.
23.399.6175.0At5g20280832150ATSPS1F (sucrose phosphate synthase 1F)Encodes a protein with putative sucrose-phosphate synthase activity. When the gene was expressed in transgenic tobacco plants, a clear trend for increased SPS activity was noted.O.I.C.G.H.G.
23.099.6164.0At1g80130844353bindingF:binding;P:response to oxidative stress;C:membrane;BPOMFAVO.I.C.G.H.G.
22.399.615.4At2g35700818139ERF38 (ERF FAMILY PROTEIN 38)encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Thought to be involved in secondary cell wall metabolism.O.I.C.G.H.G.
20.399.690.0At1g21910838793AP2 domain-containing transcription factor family proteinencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
20.299.6184.8At1g61800842477GPT2glucose6-Phosphate/phosphate transporter 2O.I.C.G.H.G.
19.199.639.2At5g62960836416unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
18.599.5273.5At4g14690827119ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis.O.I.C.G.H.G.
18.599.5177.0At1g67360843057rubber elongation factor (REF) family proteinF:unknown;P:biological_process unknown;C:vacuole;PO.I.C.G.H.G.
18.399.550.7At5g50800835152nodulin MtN3 family proteinF:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOO.I.C.G.H.G.
18.299.527.9At1g77640844099AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
17.799.5496.9At2g42540818854COR15A (COLD-REGULATED 15A)A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.O.I.C.G.H.G.
17.299.575.1At4g00490827959BAM2 (BETA-AMYLASE 2)Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype.O.I.C.G.H.G.
17.199.536.2At4g16563827356aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOO.I.C.G.H.G.
17.099.578.9At1g16850838256unknown proteinF:molecular_function unknown;P:response to salt stress;C:endomembrane system;PO.I.C.G.H.G.
14.399.484.3At4g27560828865glycosyltransferase family proteinF:transferase activity, transferring glycosyl groups;P:response to salt stress, N-terminal protein myristoylation;C:cellular_component unknown;PMBFOVO.I.C.G.H.G.
14.399.443.8At3g60520825223unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.799.4370.9At3g50970824261LTI30 (LOW TEMPERATURE-INDUCED 30)Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid.O.I.C.G.H.G.
13.799.479.1At5g08380830736AtAGAL1 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 1)F:alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process, metabolic process, lactose catabolic process;C:apoplast, cell wall, plant-type cell wall;MBFOPAO.I.C.G.H.G.
13.699.4276.9At4g17090827419CT-BMY (CHLOROPLAST BETA-AMYLASE)Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).O.I.C.G.H.G.
13.399.4313.3At5g52310835307LTI78 (LOW-TEMPERATURE-INDUCED 78)cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expressionO.I.C.G.H.G.
13.299.4105.9At3g19680821505unknown proteinF:unknown;P:unknown;C:plasma membrane;OPMBFO.I.C.G.H.G.
13.199.4337.9At1g75040843842PR5 (PATHOGENESIS-RELATED GENE 5)Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment.O.I.C.G.H.G.
13.199.422.2At1g54310841872RNA bindingF:RNA binding;P:unknown;C:plasma membrane;BOAPO.I.C.G.H.G.
12.599.342.8At1g24530839068transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:plasma membrane, heterotrimeric G-protein complex;MFOBPAO.I.C.G.H.G.
12.499.3121.0At3g52180824383SEX4 (STARCH-EXCESS 4)Encodes a plant-specific protein phosphatase that contains a protein tyrosine phosphatase (PTP) catalytic domain and a kinase interaction sequence (KIS) domain. This protein interacts with the plant SnRK AKIN11. Binds starch. Localized in the chloroplast.O.I.C.G.H.G.
12.499.336.6At2g35290818096unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
12.299.352.6At4g35300829684TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity;P:in 6 processes;C:plasma membrane, vacuole, membrane;BFMPOAO.I.C.G.H.G.
12.199.346.2At1g04240839570SHY2 (SHORT HYPOCOTYL 2)SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro.O.I.C.G.H.G.
12.099.3405.5At4g12470826859protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:defense response to fungus, lipid transport;C:endomembrane system;PBOVMFAO.I.C.G.H.G.
12.099.316.1At3g05660819733AtRLP33 (Receptor Like Protein 33)F:protein binding, kinase activity;P:signal transduction, defense response;C:chloroplast;PMOBFAVO.I.C.G.H.G.
11.999.351.0At4g39960830157DNAJ heat shock family proteinF:unfolded protein binding, heat shock protein binding, ATP binding;P:protein folding, response to heat;C:chloroplast thylakoid membrane, chloroplast;OBMFPAVO.I.C.G.H.G.
11.499.343.0At4g17550827470transporter-relatedF:sugar:hydrogen symporter activity;P:carbohydrate transport;C:plasma membrane;BMFOPAO.I.C.G.H.G.
11.299.2125.1At1g35140840399PHI-1 (PHOSPHATE-INDUCED 1)At1g35140 (At1g35140/T32G9_32) mRNA, complete cdsO.I.C.G.H.G. proteinF:unknown;P:biological_process unknown;C:cell wall;PFOO.I.C.G.H.G. a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine.O.I.C.G.H.G.
10.899.2195.4At1g17100838280SOUL heme-binding family proteinF:binding;P:biological_process unknown;C:plasma membrane, vacuole;OMPBAO.I.C.G.H.G.
10.899.217.9At1g18710838453AtMYB47 (myb domain protein 47)Member of the R2R3 factor gene family.O.I.C.G.H.G.
10.699.225.0At1g12710837826AtPP2-A12 (Phloem protein 2-A12)This gene is predicted to encode a protein with a PP2 domain. This domain in present in lectins found in squash and cucumber, suggesting that this protein could potentially have carbohydrate binding capabilities.O.I.C.G.H.G.
10.599.270.1At1g31190840007IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1)Encodes a myo-inositol monophosphatase IMPL1 (myo-Inositol monophosphatase like 1).O.I.C.G.H.G.
10.499.2240.4At3g46970823850PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2)Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen.O.I.C.G.H.G.
10.499.2211.1At2g42530818853COR15B (COLD REGULATED 15B)F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMFO.I.C.G.H.G.
10.499.272.2At1g09350837457AtGolS3 (Arabidopsis thaliana galactinol synthase 3)F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBOO.I.C.G.H.G.
10.399.2175.1At5g20830832206SUS1 (SUCROSE SYNTHASE 1)Encodes a protein with sucrose synthase activity (SUS1).O.I.C.G.H.G. phospholipase C, putativeF:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:plasma membrane;MOFBPVO.I.C.G.H.G.
10.199.2190.4At4g12490826861protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:defense response to fungus, lipid transport;C:unknown;PBOMVFAO.I.C.G.H.G.
10.199.2128.6At3g28220822448meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:response to salt stress;C:vacuole, chloroplast envelope;PMOO.I.C.G.H.G. (ATL5)Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end.O.I.C.G.H.G.
9.899.1258.6At2g29630817513THIC (ThiaminC)Encodes a protein involved in thiamine biosynthesis. The protein is an iron-sulfur cluster protein predicted to catalyze the conversion of 5-aminoimidazole ribonucleotide (AIR) to hydroxymethylpyrimidine phosphate (HMP-P). A severe reduction of THIC levels in plants decreases vitamin B1 (thiamin diphosphate (TPP)) levels and also leads to changes in the levels of numerous other metabolites since so many primary metabolic enzymes require a TPP co-factor. thiC mutants are chlorotic and arrest in their development at the cotyledon stage. A N-terminal targeting sequence directs the THIC protein to the chloroplast stroma. The THIC transcript is regulated by a TPP riboswitch in the 3' UTR. THIC transcripts are observed in seedlings 5 or more days after germination, and light promotes the expression of this gene.O.I.C.G.H.G.
9.699.1408.1At2g14610815949PR1 (PATHOGENESIS-RELATED GENE 1)PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called 'PR-1-like', the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive.O.I.C.G.H.G.
9.699.133.1At3g02250821223unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
9.499.184.0At5g06530830541ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:plasma membrane;BOMFAPVO.I.C.G.H.G.
9.399.176.1At2g36390818212SBE2.1 (starch branching enzyme 2.1)Encodes a starch branching enzyme (EC. similar to SBE2 from maize and rice. Expressed throughout plant tissues.O.I.C.G.H.G. carrier/ oxidoreductaseF:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast;BOAPFO.I.C.G.H.G.
9.199.1213.1At4g34950829647nodulin family proteinF:unknown;P:unknown;C:unknown;OBPFAMO.I.C.G.H.G.
9.199.1122.9At1g29395839815COR414-TM1encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.O.I.C.G.H.G., alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
8.899.064.9At2g35840818157sucrose-phosphatase 1 (SPP1)F:phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity;P:response to cadmium ion, sucrose biosynthetic process;C:nucleus, cytoplasm;BPOO.I.C.G.H.G.
8.799.0169.2At4g12480826860pEARLI 1a putative lipid transfer protein, vernalization-responsive and cold-inducedO.I.C.G.H.G.
8.699.0156.4At3g03250821313UGP (UDP-glucose pyrophosphorylase)Is thought to encode a cytosolic UDP-glucose pyrophosphorylase with strong similarity to potato UTP--glucose-1-phosphate uridylyltransferase. Downregulated by flooding.O.I.C.G.H.G.

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