Microarray experiments to specifically-expressed genes

Assay name E-TABM-52-raw-cel-1583683198
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
26.599.7189.3At4g03060828102AOP2 (ALKENYL HYDROXALKYL PRODUCING 2)Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis.O.I.C.G.H.G.
22.399.686.4At3g18890821422binding / catalytic/ coenzyme bindingF:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;MOFBPVAO.I.C.G.H.G.
21.299.6221.0At4g19170827655NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4)chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenaseO.I.C.G.H.G. activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
13.599.445.8At4g34480829599catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compoundsF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOO.I.C.G.H.G.
13.399.4144.1At3g29320822590glucan phosphorylase, putativeEncodes a plastidic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for maltooligosaccharides, such as maltoheptaose.O.I.C.G.H.G. (FZO-LIKE)A new plant-specific member of the dynamin superfamily; defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology, including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization.O.I.C.G.H.G.
10.599.217.0At1g34570840360unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
10.499.2283.9At3g46780823831PTAC16 (PLASTID TRANSCRIPTIONALLY ACTIVE 16)F:binding, catalytic activity;P:metabolic process;C:in 6 components;BOPMFVAO.I.C.G.H.G.
10.499.287.0At1g07280837239bindingF:binding;P:biological_process unknown;C:chloroplast;PBOAFMO.I.C.G.H.G. (SODIUM HYDROGEN EXCHANGER 2)member of Sodium proton exchanger familyO.I.C.G.H.G. activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;PO.I.C.G.H.G. (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent.O.I.C.G.H.G. (TCP family transcription factor 4)Arabidopsis thaliana TCP family transcription factor. Regulated by miR319. Involved in heterchronic regulation of leaf differentiation.O.I.C.G.H.G.
9.499.147.7At1g20070838596unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
9.399.120.0At5g02180831862amino acid transporter family proteinF:amino acid transmembrane transporter activity;P:amino acid transport;C:chloroplast, membrane;MPFOBAVO.I.C.G.H.G. (ARABIDOPSIS POTASSIUM TRANSPORT 2/3)Encodes a photosynthate- and light-dependent inward rectifying potassium channel with unique gating properties that are regulated by phosphorylation. Expressed in guard cell protoplasts and in the phloem and xylem of aerial portions of the plant. The channel can coassemble with another K+ channel, KAT1, in vitro. In guard cells, AKT2/3 is responsible for the Ca2+ sensitivity of the K+ uptake channel. In the phloem, it regulates the sucrose/H+ symporters via the phloem potential.O.I.C.G.H.G.
8.999.09.5At5g38150833795PMI15 (plastid movement impaired 15)Involved in chloroplast avoidance movement under high-light intensitiesO.I.C.G.H.G.
8.899.017.3At5g38140833794NF-YC12 (NUCLEAR FACTOR Y, SUBUNIT C12)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFOO.I.C.G.H.G.
8.899.06.1At3g03480821249CHAT (acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase)F:acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase activity;P:green leaf volatile biosynthetic process;C:cellular_component unknown;PFO.I.C.G.H.G.
8.799.013.4At5g17600831626zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage