CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-TABM-21-raw-cel-529816403

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
23.2 99.6 78.0 At3g01440 821143 oxygen evolving enhancer 3 (PsbQ) family protein F:calcium ion binding;P:photosynthesis, light reaction;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex;P O.I. C.G. H.G.
21.3 99.6 57.5 At5g05250 830407 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
20.0 99.6 37.0 At4g34830 829635 - F:unknown;P:unknown;C:chloroplast;POMFBA O.I. C.G. H.G.
18.2 99.5 98.4 At5g37260 833700 RVE2 (REVEILLE 2) Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis. O.I. C.G. H.G.
16.6 99.5 145.8 At5g53450 835426 ORG1 (OBP3-responsive gene 1) F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;PMOFB O.I. C.G. H.G.
14.2 99.4 44.2 At4g12830 826895 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:chloroplast;BOMPFA O.I. C.G. H.G.
13.3 99.4 79.7 At3g55630 824729 ATDFD (A. THALIANA DHFS-FPGS HOMOLOG D) F:tetrahydrofolylpolyglutamate synthase activity;P:one-carbon compound metabolic process;C:cytosol;BOFMPA O.I. C.G. H.G.
12.6 99.3 54.4 At5g59750 836096 riboflavin biosynthesis protein, putative F:3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity;P:riboflavin biosynthetic process;C:chloroplast;BOFAP O.I. C.G. H.G.
12.2 99.3 51.7 At5g49030 834962 OVA2 (ovule abortion 2) F:nucleotide binding, isoleucine-tRNA ligase activity, aminoacyl-tRNA ligase activity, catalytic activity, ATP binding;P:ovule development, tRNA aminoacylation for protein translation;C:chloroplast;OBMAFP O.I. C.G. H.G.
11.9 99.3 19.7 At2g04790 815022 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
11.4 99.3 50.0 At5g27290 832787 unknown protein F:unknown;P:unknown;C:chloroplast;PBO O.I. C.G. H.G.
11.3 99.3 39.0 At1g26230 839164 chaperonin, putative F:protein binding, ATP binding;P:cellular protein metabolic process;C:chloroplast;BOMFPAV O.I. C.G. H.G.
10.9 99.2 110.5 At5g48790 834937 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO O.I. C.G. H.G.
10.9 99.2 30.5 At5g63420 836461 emb2746 (embryo defective 2746) F:hydrolase activity, DNA binding, catalytic activity;P:embryonic development ending in seed dormancy, metabolic process;C:chloroplast;OBMAPFV O.I. C.G. H.G.
10.7 99.2 44.5 At4g02260 828096 RSH1 (RELA-SPOT HOMOLOG 1) F:catalytic activity;P:response to wounding;C:chloroplast;BOPMAFV O.I. C.G. H.G.
10.6 99.2 61.5 At2g47910 819403 CRR6 (chlororespiratory reduction 6) Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain. O.I. C.G. H.G.
10.5 99.2 60.8 At5g05740 830458 EGY2 S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442�454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171�179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria. O.I. C.G. H.G.
10.5 99.2 23.5 At5g09820 830842 plastid-lipid associated protein PAP / fibrillin family protein F:structural molecule activity;P:biological_process unknown;C:chloroplast;PB O.I. C.G. H.G.
10.4 99.2 77.3 At1g74880 843827 NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O) Encodes subunit NDH-O of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly. O.I. C.G. H.G.
10.0 99.2 19.3 At4g24810 828584 ABC1 family protein similar to ABC1 family protein, contains InterPro domain ABC1 protein (InterPro:IPR004147) O.I. C.G. H.G.
9.9 99.1 30.2 At2g36430 818217 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.8 99.1 34.9 At5g44520 834479 ribose 5-phosphate isomerase-related F:ribose-5-phosphate isomerase activity;P:glucose catabolic process to lactate and acetate, 5-phosphoribose 1-diphosphate biosynthetic process, reductive pentose-phosphate cycle, D-ribose catabolic process, pentose-phosphate shunt, non-oxidative branch;C:chloroplast;BOAPMF O.I. C.G. H.G.
9.5 99.1 82.6 At1g01790 837332 KEA1 (K EFFLUX ANTIPORTER 1) K efflux antiporter KEA1 O.I. C.G. H.G.
9.4 99.1 102.3 At5g58260 835938 - Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly. O.I. C.G. H.G.
9.4 99.1 61.6 At5g42070 834212 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO O.I. C.G. H.G.
9.4 99.1 56.0 At1g07010 837211 calcineurin-like phosphoesterase family protein F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:peroxisome;OBPFAV O.I. C.G. H.G.
9.3 99.1 103.0 At5g28500 832943 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPO O.I. C.G. H.G.
9.3 99.1 36.8 At5g62840 836405 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:chloroplast;PBOF O.I. C.G. H.G.
9.2 99.1 68.3 At4g39710 830126 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BMOPFA O.I. C.G. H.G.
9.2 99.1 64.3 At3g18290 821357 EMB2454 (embryo defective 2454) F:protein binding, zinc ion binding;P:embryonic development ending in seed dormancy;C:unknown;MPOFBV O.I. C.G. H.G.
9.2 99.1 31.5 At2g37450 818322 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOA O.I. C.G. H.G.
9.2 99.1 22.7 At1g59840 842278 CCB4 (COFACTOR ASSEMBLY OF COMPLEX C) F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast;BOP O.I. C.G. H.G.
9.1 99.1 175.4 At4g29060 829027 emb2726 (embryo defective 2726) F:RNA binding, translation elongation factor activity;P:embryonic development ending in seed dormancy, translational elongation, response to cadmium ion;C:chloroplast stroma, chloroplast, chloroplast envelope;BOMFPAV O.I. C.G. H.G.
9.1 99.1 99.6 At1g64680 842776 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO O.I. C.G. H.G.
9.1 99.1 86.8 At5g67370 836872 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP O.I. C.G. H.G.
9.1 99.1 34.9 At1g05385 837040 photosystem II 11 kDa protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBP O.I. C.G. H.G.
8.9 99.0 27.5 At5g19500 832070 tryptophan/tyrosine permease family protein F:amine transmembrane transporter activity;P:amino acid transport;C:membrane;BOPAMF O.I. C.G. H.G.
8.8 99.0 23.8 At2g40670 818662 ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16) response regulator 16 O.I. C.G. H.G.
8.7 99.0 33.2 At1g14030 837964 ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative F:[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity;P:unknown;C:chloroplast, chloroplast stroma;MPFO O.I. C.G. H.G.
8.6 99.0 66.6 At4g14870 827144 P-P-bond-hydrolysis-driven protein transmembrane transporter F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein secretion;C:chloroplast thylakoid membrane, chloroplast;PBO O.I. C.G. H.G.
8.6 99.0 38.5 At3g48110 823966 EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1) glycine-tRNA ligase O.I. C.G. H.G.
8.6 99.0 36.3 At5g52100 835286 crr1 (chlororespiration reduction 1) Is essential for chloroplast NAD(P)H dehydrogenase activity, which is involved in electron transfer between PSII and PSI. Likely functions in biogenesis or stabilization of the NAD(P)H dehydrogenase complex. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
23.2	99.6	78.0	At3g01440	821143	oxygen evolving enhancer 3 (PsbQ) family protein	F:calcium ion binding;P:photosynthesis, light reaction;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex;P	O.I.	C.G.	H.G.
21.3	99.6	57.5	At5g05250	830407	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
20.0	99.6	37.0	At4g34830	829635	-	F:unknown;P:unknown;C:chloroplast;POMFBA	O.I.	C.G.	H.G.
18.2	99.5	98.4	At5g37260	833700	RVE2 (REVEILLE 2)	Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis.	O.I.	C.G.	H.G.
16.6	99.5	145.8	At5g53450	835426	ORG1 (OBP3-responsive gene 1)	F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;PMOFB	O.I.	C.G.	H.G.
14.2	99.4	44.2	At4g12830	826895	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:chloroplast;BOMPFA	O.I.	C.G.	H.G.
13.3	99.4	79.7	At3g55630	824729	ATDFD (A. THALIANA DHFS-FPGS HOMOLOG D)	F:tetrahydrofolylpolyglutamate synthase activity;P:one-carbon compound metabolic process;C:cytosol;BOFMPA	O.I.	C.G.	H.G.
12.6	99.3	54.4	At5g59750	836096	riboflavin biosynthesis protein, putative	F:3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity;P:riboflavin biosynthetic process;C:chloroplast;BOFAP	O.I.	C.G.	H.G.
12.2	99.3	51.7	At5g49030	834962	OVA2 (ovule abortion 2)	F:nucleotide binding, isoleucine-tRNA ligase activity, aminoacyl-tRNA ligase activity, catalytic activity, ATP binding;P:ovule development, tRNA aminoacylation for protein translation;C:chloroplast;OBMAFP	O.I.	C.G.	H.G.
11.9	99.3	19.7	At2g04790	815022	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
11.4	99.3	50.0	At5g27290	832787	unknown protein	F:unknown;P:unknown;C:chloroplast;PBO	O.I.	C.G.	H.G.
11.3	99.3	39.0	At1g26230	839164	chaperonin, putative	F:protein binding, ATP binding;P:cellular protein metabolic process;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
10.9	99.2	110.5	At5g48790	834937	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO	O.I.	C.G.	H.G.
10.9	99.2	30.5	At5g63420	836461	emb2746 (embryo defective 2746)	F:hydrolase activity, DNA binding, catalytic activity;P:embryonic development ending in seed dormancy, metabolic process;C:chloroplast;OBMAPFV	O.I.	C.G.	H.G.
10.7	99.2	44.5	At4g02260	828096	RSH1 (RELA-SPOT HOMOLOG 1)	F:catalytic activity;P:response to wounding;C:chloroplast;BOPMAFV	O.I.	C.G.	H.G.
10.6	99.2	61.5	At2g47910	819403	CRR6 (chlororespiratory reduction 6)	Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain.	O.I.	C.G.	H.G.
10.5	99.2	60.8	At5g05740	830458	EGY2	S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442�454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171�179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria.	O.I.	C.G.	H.G.
10.5	99.2	23.5	At5g09820	830842	plastid-lipid associated protein PAP / fibrillin family protein	F:structural molecule activity;P:biological_process unknown;C:chloroplast;PB	O.I.	C.G.	H.G.
10.4	99.2	77.3	At1g74880	843827	NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O)	Encodes subunit NDH-O of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.	O.I.	C.G.	H.G.
10.0	99.2	19.3	At4g24810	828584	ABC1 family protein	similar to ABC1 family protein, contains InterPro domain ABC1 protein (InterPro:IPR004147)	O.I.	C.G.	H.G.
9.9	99.1	30.2	At2g36430	818217	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.8	99.1	34.9	At5g44520	834479	ribose 5-phosphate isomerase-related	F:ribose-5-phosphate isomerase activity;P:glucose catabolic process to lactate and acetate, 5-phosphoribose 1-diphosphate biosynthetic process, reductive pentose-phosphate cycle, D-ribose catabolic process, pentose-phosphate shunt, non-oxidative branch;C:chloroplast;BOAPMF	O.I.	C.G.	H.G.
9.5	99.1	82.6	At1g01790	837332	KEA1 (K EFFLUX ANTIPORTER 1)	K efflux antiporter KEA1	O.I.	C.G.	H.G.
9.4	99.1	102.3	At5g58260	835938	-	Encodes subunit NDH-N of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.	O.I.	C.G.	H.G.
9.4	99.1	61.6	At5g42070	834212	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO	O.I.	C.G.	H.G.
9.4	99.1	56.0	At1g07010	837211	calcineurin-like phosphoesterase family protein	F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:peroxisome;OBPFAV	O.I.	C.G.	H.G.
9.3	99.1	103.0	At5g28500	832943	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPO	O.I.	C.G.	H.G.
9.3	99.1	36.8	At5g62840	836405	phosphoglycerate/bisphosphoglycerate mutase family protein	F:catalytic activity;P:metabolic process;C:chloroplast;PBOF	O.I.	C.G.	H.G.
9.2	99.1	68.3	At4g39710	830126	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BMOPFA	O.I.	C.G.	H.G.
9.2	99.1	64.3	At3g18290	821357	EMB2454 (embryo defective 2454)	F:protein binding, zinc ion binding;P:embryonic development ending in seed dormancy;C:unknown;MPOFBV	O.I.	C.G.	H.G.
9.2	99.1	31.5	At2g37450	818322	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;PBOA	O.I.	C.G.	H.G.
9.2	99.1	22.7	At1g59840	842278	CCB4 (COFACTOR ASSEMBLY OF COMPLEX C)	F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast;BOP	O.I.	C.G.	H.G.
9.1	99.1	175.4	At4g29060	829027	emb2726 (embryo defective 2726)	F:RNA binding, translation elongation factor activity;P:embryonic development ending in seed dormancy, translational elongation, response to cadmium ion;C:chloroplast stroma, chloroplast, chloroplast envelope;BOMFPAV	O.I.	C.G.	H.G.
9.1	99.1	99.6	At1g64680	842776	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO	O.I.	C.G.	H.G.
9.1	99.1	86.8	At5g67370	836872	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP	O.I.	C.G.	H.G.
9.1	99.1	34.9	At1g05385	837040	photosystem II 11 kDa protein-related	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBP	O.I.	C.G.	H.G.
8.9	99.0	27.5	At5g19500	832070	tryptophan/tyrosine permease family protein	F:amine transmembrane transporter activity;P:amino acid transport;C:membrane;BOPAMF	O.I.	C.G.	H.G.
8.8	99.0	23.8	At2g40670	818662	ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)	response regulator 16	O.I.	C.G.	H.G.
8.7	99.0	33.2	At1g14030	837964	ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative	F:[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity;P:unknown;C:chloroplast, chloroplast stroma;MPFO	O.I.	C.G.	H.G.
8.6	99.0	66.6	At4g14870	827144	P-P-bond-hydrolysis-driven protein transmembrane transporter	F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein secretion;C:chloroplast thylakoid membrane, chloroplast;PBO	O.I.	C.G.	H.G.
8.6	99.0	38.5	At3g48110	823966	EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1)	glycine-tRNA ligase	O.I.	C.G.	H.G.
8.6	99.0	36.3	At5g52100	835286	crr1 (chlororespiration reduction 1)	Is essential for chloroplast NAD(P)H dehydrogenase activity, which is involved in electron transfer between PSII and PSI. Likely functions in biogenesis or stabilization of the NAD(P)H dehydrogenase complex.	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	-
Assay name	E-TABM-21-raw-cel-529816403
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-TABM-21-raw-cel-529816403 GSE experiment -

GSM ID -

Assay name E-TABM-21-raw-cel-529816403

GSE experiment -