Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-TABM-21-raw-cel-529816282
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
29.999.783.0At2g23910816923cinnamoyl-CoA reductase-relatedF:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:cellular_component unknown;POBFMO.I.C.G.H.G.
25.599.761.8At1g31690840056amine oxidase/ copper ion binding / quinone bindingF:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPAO.I.C.G.H.G.
23.599.6110.6At5g05270830409chalcone-flavanone isomerase family proteinF:chalcone isomerase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;PO.I.C.G.H.G.
22.199.643.1At1g23205838929invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
21.799.657.5At1g650608428144CL3encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate.O.I.C.G.H.G.
20.099.618.7At1g31680--O.I.C.G.H.G.
17.499.510.5At3g61920825365unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
15.599.561.8At3g30720822807QQS (QUA-QUINE STARCH)F:molecular_function unknown;P:starch biosynthetic process;C:cytosol;PO.I.C.G.H.G.
14.999.4123.1At1g06000837109UDP-glucoronosyl/UDP-glucosyl transferase family proteinencodes a flavonol-7-O-rhamnosyltransferase involved in the formation of rhamnosylated flavonolsO.I.C.G.H.G.
13.999.452.2At1g50450841467binding / catalyticF:binding, catalytic activity;P:metabolic process;C:chloroplast;BOFMPAO.I.C.G.H.G.
13.999.422.8At2g32640817824unknown proteinF:unknown;P:unknown;C:chloroplast;BPOO.I.C.G.H.G.
13.499.442.9At4g12830826895hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:chloroplast;BOMPFAO.I.C.G.H.G.
13.399.433.2At5g62140836334unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOO.I.C.G.H.G.
13.299.4167.9At2g40100818599LHCB4.3 (light harvesting complex PSII)Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem IIO.I.C.G.H.G.
13.299.453.8At5g49030834962OVA2 (ovule abortion 2)F:nucleotide binding, isoleucine-tRNA ligase activity, aminoacyl-tRNA ligase activity, catalytic activity, ATP binding;P:ovule development, tRNA aminoacylation for protein translation;C:chloroplast;OBMAFPO.I.C.G.H.G.
12.899.390.6At1g16080838178unknown proteinF:unknown;P:unknown;C:apoplast, chloroplast stroma, chloroplast, chloroplast envelope;POBO.I.C.G.H.G.
12.599.3119.5At5g28500832943unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPOO.I.C.G.H.G.
12.499.357.0At3g01440821143oxygen evolving enhancer 3 (PsbQ) family proteinF:calcium ion binding;P:photosynthesis, light reaction;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex;PO.I.C.G.H.G.
12.199.3285.3At3g63160825491unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast outer membrane, thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope;PO.I.C.G.H.G.
12.099.3184.4At2g38210818400PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4)F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPMO.I.C.G.H.G.
11.999.348.9At5g66470836779GTP binding / RNA bindingF:RNA binding, GTP binding;P:unknown;C:chloroplast;BOMAPFO.I.C.G.H.G.
11.899.375.1At3g55630824729ATDFD (A. THALIANA DHFS-FPGS HOMOLOG D)F:tetrahydrofolylpolyglutamate synthase activity;P:one-carbon compound metabolic process;C:cytosol;BOFMPAO.I.C.G.H.G.
11.899.339.9At1g26230839164chaperonin, putativeF:protein binding, ATP binding;P:cellular protein metabolic process;C:chloroplast;BOMFPAVO.I.C.G.H.G.
11.799.366.0At3g59780825147-F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPVO.I.C.G.H.G.
11.699.342.5At5g05250830407unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
11.399.3119.5At5g48880834946PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2)Encodes a peroxisomal 3-keto-acyl-CoA thiolase 2 precursor. EC2.3.1.16 thiolases. AT5G48880.1 is named PKT1 and AT5G48880.2 is named PKT2.O.I.C.G.H.G.
11.099.230.1At5g58310835943MES18 (METHYL ESTERASE 18)Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
10.699.2198.6At3g51240824287F3H (FLAVANONE 3-HYDROXYLASE)Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis.O.I.C.G.H.G.
10.699.276.6At1g47400841144unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.499.272.1At5g51820835257PGM (PHOSPHOGLUCOMUTASE)Encodes a plastid isoform of the enzyme phosphoglucomutase involved in controlling photosynthetic carbon flow. Effective petiole movement against the direction of the gravity requires functional PGM activity that is required for full development of amyloplasts.O.I.C.G.H.G.
9.999.1147.7At1g78570844193RHM1 (RHAMNOSE BIOSYNTHESIS 1)Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose, a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha. The dehydrogenase domain of RHM1 was shown to catalyze the conversion of UDP-D-Glc to the reaction intermediate UDP-4-keto-6-deoxy-D-Glc using recombinant protein assay but the activity of the full-length protein was not determined as it could not be expressed in E. coli.O.I.C.G.H.G.
9.999.176.3At1g01320839293tetratricopeptide repeat (TPR)-containing proteinF:binding;P:unknown;C:cellular_component unknown;MBFOPAVO.I.C.G.H.G.
9.699.194.2At3g16250820871NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP. Contains a 4Fe-4S cluster.O.I.C.G.H.G.
9.599.119.4At1g69523843286UbiE/COQ5 methyltransferase family proteinF:methyltransferase activity;P:metabolic process;C:chloroplast;BOFAMPO.I.C.G.H.G.
9.499.123.9At2g18940816411pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAO.I.C.G.H.G.
9.399.136.9At5g62840836405phosphoglycerate/bisphosphoglycerate mutase family proteinF:catalytic activity;P:metabolic process;C:chloroplast;PBOFO.I.C.G.H.G.
9.199.132.7At2g22360816768DNAJ heat shock family proteinF:unfolded protein binding, heat shock protein binding, ATP binding;P:protein folding, response to heat;C:chloroplast thylakoid membrane, chloroplast;OBMFPAVO.I.C.G.H.G.
8.999.022.4At1g59840842278CCB4 (COFACTOR ASSEMBLY OF COMPLEX C)F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast;BOPO.I.C.G.H.G.
8.899.0204.5At3g13470820549chaperonin, putativeF:protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:in 7 components;BOMFPAVO.I.C.G.H.G.
8.899.021.2At2g20020816521CAF1Promotes the splicing of chloroplast group II introns. Splices clpP-1 and ropC1 introns.O.I.C.G.H.G.
8.699.0197.0At1g56190842072phosphoglycerate kinase, putativeF:phosphoglycerate kinase activity;P:response to cadmium ion, glycolysis;C:thylakoid, mitochondrion, chloroplast stroma, chloroplast, membrane;OBPMAFO.I.C.G.H.G.
8.699.073.0At5g35210833475peptidase M50 family protein / sterol-regulatory element binding protein (SREBP) site 2 protease family proteinF:protein binding, DNA binding, metalloendopeptidase activity, zinc ion binding;P:proteolysis, regulation of transcription, DNA-dependent;C:nucleus, chloroplast envelope;MPOFBAO.I.C.G.H.G.
8.699.036.3At1g60590842353polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVAO.I.C.G.H.G.



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