Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-TABM-21-raw-cel-529816001
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
35.799.790.7At2g23910816923cinnamoyl-CoA reductase-relatedF:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:cellular_component unknown;POBFMO.I.C.G.H.G.
24.499.620.6At1g31680--O.I.C.G.H.G.
24.299.660.8At1g650608428144CL3encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate.O.I.C.G.H.G.
19.599.654.1At1g31690840056amine oxidase/ copper ion binding / quinone bindingF:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPAO.I.C.G.H.G.
18.599.539.5At1g23205838929invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
17.699.595.8At5g05270830409chalcone-flavanone isomerase family proteinF:chalcone isomerase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;PO.I.C.G.H.G.
14.499.461.4At3g01440821143oxygen evolving enhancer 3 (PsbQ) family proteinF:calcium ion binding;P:photosynthesis, light reaction;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex;PO.I.C.G.H.G.
13.799.433.7At5g58310835943MES18 (METHYL ESTERASE 18)Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
13.699.4117.4At1g06000837109UDP-glucoronosyl/UDP-glucosyl transferase family proteinencodes a flavonol-7-O-rhamnosyltransferase involved in the formation of rhamnosylated flavonolsO.I.C.G.H.G.
13.699.443.2At4g12830826895hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:chloroplast;BOMPFAO.I.C.G.H.G.
13.699.442.8At1g26230839164chaperonin, putativeF:protein binding, ATP binding;P:cellular protein metabolic process;C:chloroplast;BOMFPAVO.I.C.G.H.G.
13.099.4167.0At2g40100818599LHCB4.3 (light harvesting complex PSII)Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem IIO.I.C.G.H.G.
12.999.332.7At5g62140836334unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOO.I.C.G.H.G.
12.999.322.0At2g32640817824unknown proteinF:unknown;P:unknown;C:chloroplast;BPOO.I.C.G.H.G.
12.499.3124.9At5g48880834946PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2)Encodes a peroxisomal 3-keto-acyl-CoA thiolase 2 precursor. EC2.3.1.16 thiolases. AT5G48880.1 is named PKT1 and AT5G48880.2 is named PKT2.O.I.C.G.H.G.
12.199.3117.5At5g28500832943unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPOO.I.C.G.H.G.
12.199.38.7At3g61920825365unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
11.699.386.3At1g16080838178unknown proteinF:unknown;P:unknown;C:apoplast, chloroplast stroma, chloroplast, chloroplast envelope;POBO.I.C.G.H.G.
11.199.2203.1At3g51240824287F3H (FLAVANONE 3-HYDROXYLASE)Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis.O.I.C.G.H.G.
11.099.2197.7At1g17100838280SOUL heme-binding family proteinF:binding;P:biological_process unknown;C:plasma membrane, vacuole;OMPBAO.I.C.G.H.G.
10.899.281.5At5g62210836342embryo-specific protein-relatedF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFVBAO.I.C.G.H.G.
10.799.273.3At5g51820835257PGM (PHOSPHOGLUCOMUTASE)Encodes a plastid isoform of the enzyme phosphoglucomutase involved in controlling photosynthetic carbon flow. Effective petiole movement against the direction of the gravity requires functional PGM activity that is required for full development of amyloplasts.O.I.C.G.H.G.
10.499.232.6At5g01590830369unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast envelope;BPOO.I.C.G.H.G.
9.999.126.1At4g34830829635-F:unknown;P:unknown;C:chloroplast;POMFBAO.I.C.G.H.G.
9.799.1146.9At1g78570844193RHM1 (RHAMNOSE BIOSYNTHESIS 1)Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose, a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha. The dehydrogenase domain of RHM1 was shown to catalyze the conversion of UDP-D-Glc to the reaction intermediate UDP-4-keto-6-deoxy-D-Glc using recombinant protein assay but the activity of the full-length protein was not determined as it could not be expressed in E. coli.O.I.C.G.H.G.
9.699.146.0At5g49030834962OVA2 (ovule abortion 2)F:nucleotide binding, isoleucine-tRNA ligase activity, aminoacyl-tRNA ligase activity, catalytic activity, ATP binding;P:ovule development, tRNA aminoacylation for protein translation;C:chloroplast;OBMAFPO.I.C.G.H.G.
9.599.1231.5At4g17090827419CT-BMY (CHLOROPLAST BETA-AMYLASE)Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).O.I.C.G.H.G.
9.299.123.5At2g18940816411pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAO.I.C.G.H.G.
8.899.077.3At1g31800840067CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)Encodes a protein with β-ring carotenoid hydroxylase activity.O.I.C.G.H.G.
8.899.032.3At3g10840820253hydrolase, alpha/beta fold family proteinF:hydrolase activity, catalytic activity;P:unknown;C:chloroplast envelope;BOMPFAVO.I.C.G.H.G.
8.799.0160.1At4g28660828984PSB28 (PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN)Similar to PsbW subunit of photosystem II.O.I.C.G.H.G.
8.699.078.1At3g28270822453-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMPOAFVO.I.C.G.H.G.
8.699.071.2At1g01320839293tetratricopeptide repeat (TPR)-containing proteinF:binding;P:unknown;C:cellular_component unknown;MBFOPAVO.I.C.G.H.G.
8.699.064.1At3g55630824729ATDFD (A. THALIANA DHFS-FPGS HOMOLOG D)F:tetrahydrofolylpolyglutamate synthase activity;P:one-carbon compound metabolic process;C:cytosol;BOFMPAO.I.C.G.H.G.



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