Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-TABM-19-raw-cel-489757364
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
53.499.869.9At5g59330836052lipid bindingF:lipid binding;P:lipid transport;C:endomembrane systemO.I.C.G.H.G.
31.299.7104.8At4g37750829931ANT (AINTEGUMENTA)ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia.O.I.C.G.H.G.
28.399.714.1At3g27920822415ATMYB0 (MYB DOMAIN PROTEIN 0)Encodes a Myb-like protein that is required for induction of trichome development.O.I.C.G.H.G.
28.299.741.1At1g11600837704CYP77B1member of CYP77BO.I.C.G.H.G.
26.699.7269.8At4g22490828344protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
25.099.633.4At1g06100837119fatty acid desaturase family proteinF:oxidoreductase activity;P:lipid metabolic process;C:unknown;BOMFPVO.I.C.G.H.G.
24.699.619.5At1g72670843599iqd8 (IQ-domain 8)F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.C.G.H.G.
24.499.622.7At3g63300825505phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:unknown;OMPBFO.I.C.G.H.G.
23.499.632.9At1g29270839801unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
23.199.619.3At1g04160839246XIB (MYOSIN XI B)Encodes a member of the type XI myosin protein family involved in root hair elongation.O.I.C.G.H.G.
22.499.631.6At5g64110836532peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:membrane;PFOBO.I.C.G.H.G.
21.899.6339.6At4g29030829024glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAO.I.C.G.H.G.
19.899.627.9At5g23420832408HMGB6Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.O.I.C.G.H.G.
19.499.621.7At5g66940836828Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POO.I.C.G.H.G.
19.099.538.9At4g02850828160phenazine biosynthesis PhzC/PhzF family proteinF:catalytic activity;P:biosynthetic process;C:endomembrane system;BOMFPAO.I.C.G.H.G.
19.099.532.1At1g78430844179-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
18.799.518.8At3g29590822623AT5MATAt3g29590 (At5MAT) encodes a malonyl-CoA:anthocyanidin 5-O-glucoside-6"-O-malonyltransferase that is coordinately expressed with a epistatic 5-O-anthocyanidin glucosyltransferase (At4g14090). The enzyme is involved in the malonylation of anthocyanins in Arabidopsis.O.I.C.G.H.G.
18.599.511.6At4g31805829309WRKY family transcription factorF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;PMOBO.I.C.G.H.G.
18.499.526.0At4g00480827965myc-related transcription factor (MYC1)MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminusO.I.C.G.H.G.
18.399.557.4At3g23890821972TOPII (TOPOISOMERASE II)Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues.O.I.C.G.H.G.
17.999.596.0At2g29570817506PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2)Functionally interacts with POLH to repair DNA damaged by UVB damage.O.I.C.G.H.G.
17.999.593.7At5g10400830904histone H3F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPOO.I.C.G.H.G.
17.599.573.4At2g43800818984formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MPFOBVAO.I.C.G.H.G.
17.599.565.3At1g57820842157VIM1 (VARIANT IN METHYLATION 1)Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts.O.I.C.G.H.G.
17.199.528.7At3g13175820507unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
17.199.522.9At1g74890843828ARR15 (RESPONSE REGULATOR 15)Encodes a nuclear response regulator that acts as a negative regulator in cytokinin-mediated signal transduction. Transcript accumulates in leaves and roots in response to cytokinin treatment.O.I.C.G.H.G.
16.799.511.4At5g60780836199ATNRT2.3member of High affinity nitrate transporter familyO.I.C.G.H.G.
16.499.5106.7At1g07370837249PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation.O.I.C.G.H.G.
16.499.547.3At5g48360834889formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MPOFVBAO.I.C.G.H.G.
16.399.58.5At4g03270828000CYCD6F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus;MPOFVO.I.C.G.H.G.
15.999.523.5At3g12170820394DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
15.599.533.4At1g18370838418HIK (HINKEL)Mutant has cytokinesis defects; seedling lethalO.I.C.G.H.G.
15.199.494.5At5g22880832352HTB2Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases.O.I.C.G.H.G.
15.099.443.0At1g66250842942glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFOO.I.C.G.H.G.
14.899.488.0At4g33260829462CDC20.2putative cdc20 protein (CDC20.2)O.I.C.G.H.G.
14.799.416.0At1g68640843194PAN (PERIANTHIA)Encodes bZIP-transcription factor. Mutant plants have extra floral organs.O.I.C.G.H.G.
14.699.458.7At4g02060828153PRL (PROLIFERA)Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.O.I.C.G.H.G.
14.699.423.8At5g48600834917ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3)member of SMC subfamilyO.I.C.G.H.G.
14.699.418.1At4g39630830117unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.599.480.9At5g23940832459EMB3009 (embryo defective 3009)F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PFBOO.I.C.G.H.G.
14.399.4114.3At5g10390830903histone H3F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPOO.I.C.G.H.G.
14.199.412.5At1g34355840337forkhead-associated domain-containing protein / FHA domain-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPAVO.I.C.G.H.G.
14.099.450.6At5g44730834502haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, phosphoglycolate phosphatase activity, catalytic activity;P:metabolic process;C:endomembrane system;BMAOFPO.I.C.G.H.G.
14.099.426.2At5g62710836392leucine-rich repeat family protein / protein kinase family proteinF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
13.799.439.9At3g17680821035-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBFO.I.C.G.H.G.
13.699.438.1At2g22840816815AtGRF1 (GROWTH-REGULATING FACTOR 1)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flowerO.I.C.G.H.G.
13.699.434.9At5g37010833671unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;MOFBPVAO.I.C.G.H.G.
13.699.420.3At3g57830824952leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
13.399.432.2At5g50740835146metal ion bindingF:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFVO.I.C.G.H.G.
13.399.422.8At2g29890817539VLN1 (VILLIN-LIKE 1)Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization.O.I.C.G.H.G.
13.299.434.8At2g26180817158IQD6 (IQ-domain 6)F:calmodulin binding;P:unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
13.299.49.5At1g51670841592unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.199.426.0At2g34190817980xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:membrane;BOMPFAVO.I.C.G.H.G.
13.099.4120.7At4g38680830024GRP2 (GLYCINE RICH PROTEIN 2)Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development.O.I.C.G.H.G.
13.099.422.2At3g56990824866EDA7 (embryo sac development arrest 7)F:molecular_function unknown;P:megagametogenesis;C:nucleolus, CUL4 RING ubiquitin ligase complex;MFOPBVO.I.C.G.H.G.
12.899.322.7At3g01410821319RNase H domain-containing proteinF:ribonuclease H activity, nuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;POBAMO.I.C.G.H.G.
12.799.348.1At4g39510830105CYP96A12member of CYP96AO.I.C.G.H.G.
12.799.313.6At5g63950836516CHR24 (chromatin remodeling 24)F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:response to cadmium ion;C:unknown;MOBFPVAO.I.C.G.H.G.
12.699.386.7At3g45930823736histone H4F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MOPFVO.I.C.G.H.G.
12.599.331.9At1g28710839771unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
12.599.327.8At5g08020830696RPA70B (RPA70-KDA SUBUNIT B)Encodes a homolog of Replication Protein A. rpa70b mutants are hypersensitive to UV-B radiation and MMS treatments suggesting a role for this protein in DNA damage repair.O.I.C.G.H.G.
12.499.323.0At4g02800828171unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVAO.I.C.G.H.G.
12.499.318.1At4g11080826709high mobility group (HMG1/2) family proteinF:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAVO.I.C.G.H.G.
12.499.311.0At5g60880836209unknown proteinF:unknown;P:unknown;C:cellular_component unknown;OPMFO.I.C.G.H.G.
12.499.310.0At3g52540824420OFP18 (OVATE FAMILY PROTEIN 18)F:unknown;P:biological_process unknown;C:chloroplast;MPOFO.I.C.G.H.G.
12.399.371.5At5g28640832968AN3 (ANGUSTIFOLIA 3)Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors.O.I.C.G.H.G.
12.399.340.9At5g61000836221replication protein, putativeF:DNA binding, nucleic acid binding;P:DNA replication;C:nucleus;PMOFAO.I.C.G.H.G.
12.399.327.7At5g57410835847unknown proteinF:unknown;P:response to cadmium ion;C:unknown;MOFBPAVO.I.C.G.H.G.
12.399.326.3At5g66750836808CHR1 (CHROMATIN REMODELING 1)Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1 shows some resistance to agrobacterium-mediated root transformation.O.I.C.G.H.G.
12.299.312.8At1g55200841963protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
12.299.312.7At1g09450837468haspin-relatedF:protein kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;MFOPO.I.C.G.H.G.
12.199.331.3At4g09510826535beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putativeF:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:cellular_component unknown;OPBO.I.C.G.H.G.
12.099.367.2At3g46940823847deoxyuridine 5'-triphosphate nucleotidohydrolase familyF:hydrolase activity, dUTP diphosphatase activity;P:2'-deoxyribonucleotide metabolic process, dUTP metabolic process;C:cellular_component unknown;BOVMFPAO.I.C.G.H.G.
12.099.344.8At4g28310828946unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
12.099.320.3At4g25240828627SKS1 (SKU5 SIMILAR 1)Encodes GPI-anchored SKU5-like protein.O.I.C.G.H.G.
12.099.317.5At2g28620817411kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAVO.I.C.G.H.G.
12.099.310.5At4g17240827436unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBFO.I.C.G.H.G.
11.999.350.1At3g27360822357histone H3F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPOO.I.C.G.H.G.
11.999.329.7At2g37080818284myosin heavy chain-relatedF:unknown;P:unknown;C:chloroplast;MOBFPAVO.I.C.G.H.G.
11.899.320.0At3g06030819774ANP3 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 3)NPK1-related protein kinase 3O.I.C.G.H.G.
11.699.3271.7At2g28790817428osmotin-like protein, putativeF:molecular_function unknown;P:response to other organism;C:plant-type cell wall;PFMBOO.I.C.G.H.G.
11.699.347.7At4g34160829564CYCD3encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1.O.I.C.G.H.G.
11.699.334.2At1g02690839517IMPA-6 (IMPORTIN ALPHA ISOFORM 6)Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.O.I.C.G.H.G.
11.699.333.9At3g14890820718phosphoesteraseF:DNA binding, catalytic activity, zinc ion binding;P:unknown;C:unknown;MOFPVBAO.I.C.G.H.G.
11.599.3122.1At3g54560824621HTA11Encodes HTA11, a histone H2A protein.O.I.C.G.H.G.
11.599.333.9At1g50240841446--O.I.C.G.H.G.
11.599.319.7At5g07180830609ERL2 (ERECTA-LIKE 2)Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments.O.I.C.G.H.G.
11.599.318.3At3g24495822040MSH7 (MUTS HOMOLOG 7)encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH7 exhibit moderate affinity for a (T/G) substrate and weak binding of (+T), suggesting MSH2*MSH7 may be specialized for lesions/base mispairs not tested or for (T/G) mispairs in special contexts.O.I.C.G.H.G.
11.499.322.4At3g57780824947-F:unknown;P:unknown;C:unknown;OMFBPVAO.I.C.G.H.G.
11.499.38.6At5g55820835676unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.C.G.H.G.
11.399.391.9At1g07790837293HTB1Encodes a histone 2B (H2B) protein.O.I.C.G.H.G.
11.399.362.7At1g11820837730catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compoundsF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;POO.I.C.G.H.G.
11.299.280.3At3g56370824804leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
11.299.278.5At2g33620817928DNA-binding family protein / AT-hook protein 1 (AHP1)F:DNA binding;P:unknown;C:cytosol;PBMOO.I.C.G.H.G.
11.299.254.3At5g38930833885germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:cell wall;PFOO.I.C.G.H.G.
11.299.251.6At1g72040843535deoxynucleoside kinase familyF:phosphotransferase activity, alcohol group as acceptor, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:nucleus;BOMVPO.I.C.G.H.G.
11.199.214.5At3g51290824292proline-rich family proteinF:unknown;P:N-terminal protein myristoylation;C:unknown;MPOBFVAO.I.C.G.H.G.
11.199.27.9At5g11320831003YUC4 (YUCCA4)Belongs to the YUC gene family. Encodes a predicted flavin monooxygenase YUC4 involved in auxin biosynthesis and plant development.O.I.C.G.H.G.
11.099.283.9At3g02640821289unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
11.099.247.3At5g65410836666HB25 (HOMEOBOX PROTEIN 25)Encodes ZFHD2, a member of the zinc finger homeodomain transcriptional factor family.O.I.C.G.H.G.



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