Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-TABM-19-raw-cel-489757149
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
57.299.887.0At4g34400829590DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MOBFPVAO.I.C.G.H.G.
38.599.8324.0At1g62500842547protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;MBPOFVAO.I.C.G.H.G.
30.299.747.6At2g42800818880AtRLP29 (Receptor Like Protein 29)F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFAO.I.C.G.H.G.
29.599.726.3At4g27240828832zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PFOO.I.C.G.H.G.
28.199.7117.9At1g44760841040universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:unknown;PMOO.I.C.G.H.G.
27.999.725.0At1g16070838177AtTLP8 (TUBBY LIKE PROTEIN 8)Member of TLP familyO.I.C.G.H.G.
27.099.794.7At5g44620834490CYP706A3member of CYP706AO.I.C.G.H.G.
26.599.7161.5At1g13710837932CYP78A5member of CYP78AO.I.C.G.H.G.
25.099.628.9At1g67040843024unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO.I.C.G.H.G.
24.799.681.3At3g50070824169CYCD3Encode CYCD3;3, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development.O.I.C.G.H.G.
23.999.641.9At5g43020834317leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
23.999.631.9At4g02800828171unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVAO.I.C.G.H.G.
23.199.6350.0At4g29030829024glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAO.I.C.G.H.G.
22.999.668.1At5g65410836666HB25 (HOMEOBOX PROTEIN 25)Encodes ZFHD2, a member of the zinc finger homeodomain transcriptional factor family.O.I.C.G.H.G.
22.899.6130.1At4g38660830022thaumatin, putativeF:molecular_function unknown;P:response to other organism;C:anchored to membrane;PFMBOVO.I.C.G.H.G.
22.499.655.4At5g48360834889formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MPOFVBAO.I.C.G.H.G.
22.499.641.2At3g06220819796DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
22.199.695.7At5g28640832968AN3 (ANGUSTIFOLIA 3)Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors.O.I.C.G.H.G.
22.199.642.0At3g18960821429transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
22.199.639.3At3g61830825356ARF18 (AUXIN RESPONSE FACTOR 18)F:transcription factor activity;P:response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMBAFOO.I.C.G.H.G.
22.199.632.3At3g54720824637AMP1 (ALTERED MERISTEM PROGRAM 1)Encodes glutamate carboxypeptidase. Various alleles show-increased cotyledon number and rate of leaf initiation, show transformation of leaves to cotyledons, altered flowering time and photomorphogenesis and an increased level of cytokinin biosynthesis. Involved in ethylene enhanced hypocotyl elongation in the light. Strong genetic interaction between TGH and AMP1.O.I.C.G.H.G.
21.799.637.1At3g13960820609AtGRF5 (GROWTH-REGULATING FACTOR 5)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower.O.I.C.G.H.G.
21.599.6205.0At1g18250838405ATLP-1encodes a thaumatin-like proteinO.I.C.G.H.G.
21.399.612.3At3g27920822415ATMYB0 (MYB DOMAIN PROTEIN 0)Encodes a Myb-like protein that is required for induction of trichome development.O.I.C.G.H.G.
21.299.640.6At5g50740835146metal ion bindingF:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFVO.I.C.G.H.G.
21.099.678.5At3g13510820553unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PFBO.I.C.G.H.G.
20.999.658.1At3g51720824335unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBPFAVO.I.C.G.H.G.
20.699.646.9At5g25090832580plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PO.I.C.G.H.G.
20.499.626.2At5g07180830609ERL2 (ERECTA-LIKE 2)Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments.O.I.C.G.H.G.
20.099.638.0At1g18370838418HIK (HINKEL)Mutant has cytokinesis defects; seedling lethalO.I.C.G.H.G.
20.099.623.0At1g28360839732ERF12 (ERF DOMAIN PROTEIN 12)encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ERF12). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.O.I.C.G.H.G.
20.099.620.9At1g10980837641-F:unknown;P:biological_process unknown;C:vacuole;MFPOO.I.C.G.H.G.
20.099.620.3At5g55340835627long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family proteinF:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BPOFO.I.C.G.H.G.
19.799.689.1At1g02730839467ATCSLD5Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems.O.I.C.G.H.G.
19.699.683.0At4g37750829931ANT (AINTEGUMENTA)ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia.O.I.C.G.H.G.
19.599.649.8At2g21050816640amino acid permease, putativeF:amino acid transmembrane transporter activity, transporter activity;P:amino acid transport, response to nematode;C:membrane;PFMOO.I.C.G.H.G.
19.499.675.1At3g17840821053RLK902Encodes a receptor-like kinase found at the cell surface of various tissues. Its function remains unknown.O.I.C.G.H.G.
19.499.669.1At2g45190819127AFO (ABNORMAL FLORAL ORGANS)Encodes a member of the YABBY family of transcriptional regulators that is involved in abaxial cell type specification in leaves and fruits. YAB1 acts in a non-cell autonomous fashion within the meristem to affect phyllotactic patterning. The non-autonomous effect on the central region of the meristem is mediated through the activity if Lateral Suppressor (LAS).O.I.C.G.H.G.
19.499.659.1At3g23890821972TOPII (TOPOISOMERASE II)Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues.O.I.C.G.H.G.
19.399.674.7At4g36180829775leucine-rich repeat family proteinF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
19.299.664.1At5g51560835230leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
19.299.662.7At4g15830827264bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.C.G.H.G.
19.199.657.2At1g54020841840myrosinase-associated protein, putativeF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuole;PBMO.I.C.G.H.G.
19.199.651.5At2g36570818230leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.C.G.H.G.
19.199.611.3At5g01660830423-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPBVFAO.I.C.G.H.G.
19.099.568.1At1g57820842157VIM1 (VARIANT IN METHYLATION 1)Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts.O.I.C.G.H.G.
19.099.528.5At4g15140827180unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
19.099.527.6At3g22790821850kinase interacting family proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAVO.I.C.G.H.G.
18.999.596.2At5g10400830904histone H3F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPOO.I.C.G.H.G.
18.899.576.1At2g43800818984formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MPFOBVAO.I.C.G.H.G.
18.799.5109.5At3g02640821289unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
18.799.565.6At5g20740832197invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
18.799.541.6At3g25980822195mitotic spindle checkpoint protein, putative (MAD2)F:DNA binding;P:mitosis, mitotic cell cycle spindle assembly checkpoint;C:endomembrane system;MFOPO.I.C.G.H.G.
18.699.542.3At5g44560834483VPS2.2F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOBO.I.C.G.H.G.
18.599.5171.4At5g08000830694E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3)Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and binds callose.O.I.C.G.H.G.
18.599.547.3At5g11160830985APT5 (Adenine phosphoribosyltransferase 5)F:adenine phosphoribosyltransferase activity;P:nucleoside metabolic process, adenine salvage, anaerobic respiration, nucleotide metabolic process;C:cellular_component unknown;BOAMFPO.I.C.G.H.G.
18.499.526.8At2g29890817539VLN1 (VILLIN-LIKE 1)Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization.O.I.C.G.H.G.
18.399.529.5At2g07170815286bindingF:binding;P:biological_process unknown;C:cellular_component unknown;PFBOMAO.I.C.G.H.G.
18.399.514.6At3g58770825046unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
18.399.511.5At4g35900829744FDbZIP protein required for positive regulation of flowering. Mutants are late flowering. FD interacts with FT to promote flowering.Expressed in the shoot apex in floral anlagen, then declines in floral primordia.O.I.C.G.H.G.
18.299.5214.3At5g51750835249ATSBT1.3 (ARABIDOPSIS THALIANA SUBTILASE 1.3)F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPFOAMO.I.C.G.H.G.
18.299.558.7At1g53160841749SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4)Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.O.I.C.G.H.G.
18.199.529.5At1g56020842053unknown proteinF:unknown;P:unknown;C:unknown;OMFBPVO.I.C.G.H.G.
18.099.5101.8At3g56370824804leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
17.999.524.9At3g12170820394DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
17.899.5141.5At4g38680830024GRP2 (GLYCINE RICH PROTEIN 2)Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development.O.I.C.G.H.G.
17.799.545.7At1g02800839385ATCEL2Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.O.I.C.G.H.G.
17.699.5110.5At1g07370837249PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation.O.I.C.G.H.G.
17.699.522.0At3g05470819712formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:endomembrane system;MPOFVBAO.I.C.G.H.G.
17.599.576.0At1g75240843861AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33)F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PMOFBVO.I.C.G.H.G.
17.599.536.4At3g61250825297AtMYB17 (myb domain protein 17)Member of the R2R3 factor gene family.O.I.C.G.H.G.
17.499.5112.2At5g16250831485unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
17.499.513.3At1g19830838570auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
17.199.510.4At1g60630842357leucine-rich repeat family proteinF:protein kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
17.099.514.8At3g57920824961SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15)Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expression is regulated by MIR156b.O.I.C.G.H.G.
16.999.553.4At3g14190820636unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
16.999.517.2At1g68640843194PAN (PERIANTHIA)Encodes bZIP-transcription factor. Mutant plants have extra floral organs.O.I.C.G.H.G.
16.899.58.5At3g15550820794unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
16.799.533.8At2g25270817065unknown proteinF:unknown;P:unknown;C:plasma membrane;POBMO.I.C.G.H.G.
16.599.589.4At3g54820824647PIP2F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAVO.I.C.G.H.G.
16.599.586.1At5g23940832459EMB3009 (embryo defective 3009)F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PFBOO.I.C.G.H.G.
16.599.521.5At1g76310843964CYCB2core cell cycle genesO.I.C.G.H.G.
16.399.5109.8At1g08560837378SYP111 (SYNTAXIN OF PLANTS 111)member of SYP11 Gene FamilyO.I.C.G.H.G.
16.299.544.5At1g66250842942glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFOO.I.C.G.H.G.
16.199.5123.9At3g53190824485pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFOO.I.C.G.H.G.
16.199.593.2At2g25060817044plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PO.I.C.G.H.G.
16.199.524.3At4g00480827965myc-related transcription factor (MYC1)MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminusO.I.C.G.H.G.
16.199.514.8At1g55200841963protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
16.199.514.4At2g01210814649leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:chloroplast stroma, chloroplast, plasma membrane, plant-type cell wall;PMOBFVAO.I.C.G.H.G.
15.799.523.3At3g20260821570structural constituent of ribosomeF:structural constituent of ribosome;P:translation;C:ribosome, intracellular;MOPFVBO.I.C.G.H.G.
15.799.511.6At2g33560817921spindle checkpoint protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
15.699.591.8At3g61310825303DNA-binding family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
15.699.539.0At3g02210821245COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR)F:unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
15.699.513.0At1g31310840019hydroxyproline-rich glycoprotein family proteinF:transcription factor activity;P:regulation of transcription;C:unknown;MPOBFVAO.I.C.G.H.G.
15.599.566.3At5g36710833636unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
15.599.528.4At4g28950829016ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9)A member of ROP GTPase gene family.O.I.C.G.H.G.
15.599.520.4At1g75090843846methyladenine glycosylase family proteinF:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMFO.I.C.G.H.G.
15.499.553.8At1g53070841741legume lectin family proteinF:carbohydrate binding, sugar binding;P:biological_process unknown;C:cell wall, plant-type cell wall;PBOO.I.C.G.H.G.
15.499.521.6At3g57830824952leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
15.499.510.6At4g31805829309WRKY family transcription factorF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;PMOBO.I.C.G.H.G.



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