CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-TABM-18-raw-cel-489543574

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
22.8 99.6 79.5 At3g15520 820791 peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase F:peptidyl-prolyl cis-trans isomerase activity;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOPA O.I. C.G. H.G.
19.1 99.6 154.8 At5g36910 833659 THI2.2 (THIONIN 2.2) Encodes a thionin that is expressed at a low basal level in seedlings and shows circadian variation. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. O.I. C.G. H.G.
15.4 99.5 60.8 At5g10140 830878 FLC (FLOWERING LOCUS C) MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3’ to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex. O.I. C.G. H.G.
12.3 99.3 17.9 At3g46490 823802 iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:secondary metabolic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
11.0 99.2 112.0 At5g28500 832943 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPO O.I. C.G. H.G.
10.4 99.2 71.9 At2g21280 816667 SULA A nuclear-encoded, plastid-targeted protein (AtSulA) whose overexpression causes severe yet stochastic plastid (shown in chloroplasts and leucoplasts) division defects. The protein does not appear to interact with either AtFtsZ proteins when studied in a yeast two-hybrid system. O.I. C.G. H.G.
9.9 99.1 10.0 At2g47570 819370 60S ribosomal protein L18 (RPL18A) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, large ribosomal subunit;MOFPA O.I. C.G. H.G.
9.5 99.1 19.7 At1g03710 839427 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB O.I. C.G. H.G.
9.3 99.1 65.0 At4g39970 830158 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast, chloroplast stroma, chloroplast envelope;BOPMFAV O.I. C.G. H.G.
9.2 99.1 23.5 At3g44970 823632 cytochrome P450 family protein F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:endomembrane system;MPBFOAV O.I. C.G. H.G.
9.1 99.1 25.9 At1g58025 842169 DNA binding F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MOFBPV O.I. C.G. H.G.
9.1 99.1 23.7 At2g40010 818589 60S acidic ribosomal protein P0 (RPP0A) F:structural constituent of ribosome;P:translational elongation, translation, ribosome biogenesis;C:cytosolic ribosome, ribosome;MOAFPB O.I. C.G. H.G.
8.9 99.0 109.5 At4g03060 828102 AOP2 (ALKENYL HYDROXALKYL PRODUCING 2) Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis. O.I. C.G. H.G.
8.9 99.0 20.4 At3g04650 819623 oxidoreductase F:oxidoreductase activity;P:unknown;C:chloroplast;OBPAMF O.I. C.G. H.G.
8.8 99.0 66.3 At5g51820 835257 PGM (PHOSPHOGLUCOMUTASE) Encodes a plastid isoform of the enzyme phosphoglucomutase involved in controlling photosynthetic carbon flow. Effective petiole movement against the direction of the gravity requires functional PGM activity that is required for full development of amyloplasts. O.I. C.G. H.G.

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