CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-TABM-18-raw-cel-489543301

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
19.3 99.6 161.8 At4g03060 828102 AOP2 (ALKENYL HYDROXALKYL PRODUCING 2) Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis. O.I. C.G. H.G.
17.9 99.5 18.5 At2g25640 817105 zinc ion binding F:zinc ion binding;P:transcription;C:nucleus;MFBPO O.I. C.G. H.G.
17.7 99.5 19.3 At2g26630 3768014 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
17.0 99.5 32.7 At4g19830 827727 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid lumen;BMOPFA O.I. C.G. H.G.
11.6 99.3 108.5 At1g72030 843534 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:unknown;PBO O.I. C.G. H.G.
11.6 99.3 31.3 At1g23205 838929 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
11.0 99.2 31.6 At2g27420 817287 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF O.I. C.G. H.G.
10.9 99.2 83.6 At1g16080 838178 unknown protein F:unknown;P:unknown;C:apoplast, chloroplast stroma, chloroplast, chloroplast envelope;POB O.I. C.G. H.G.
10.5 99.2 49.4 At1g79560 844294 FTSH12 (FTSH PROTEASE 12) encodes an FtsH protease that is localized to the chloroplast O.I. C.G. H.G.
10.4 99.2 148.5 At4g28080 828923 binding F:binding;P:unknown;C:unknown;MBFOPAV O.I. C.G. H.G.
10.4 99.2 37.7 At4g12830 826895 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:chloroplast;BOMPFA O.I. C.G. H.G.
10.0 99.2 146.2 At5g51720 835246 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPO O.I. C.G. H.G.
9.9 99.1 55.6 At4g32570 829392 TIFY8 (TIFY DOMAIN PROTEIN 8) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
9.7 99.1 68.1 At3g59980 825168 tRNA-binding region domain-containing protein F:tRNA binding;P:unknown;C:chloroplast;BOMAFP O.I. C.G. H.G.
9.7 99.1 50.3 At3g01440 821143 oxygen evolving enhancer 3 (PsbQ) family protein F:calcium ion binding;P:photosynthesis, light reaction;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex;P O.I. C.G. H.G.
9.4 99.1 108.5 At1g14345 837996 oxidoreductase F:oxidoreductase activity;P:oxidation reduction;C:chloroplast thylakoid membrane, chloroplast, membrane;OBP O.I. C.G. H.G.
9.4 99.1 27.9 At5g58310 835943 MES18 (METHYL ESTERASE 18) Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
9.2 99.1 31.8 At5g42760 834285 - F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMF O.I. C.G. H.G.
9.2 99.1 31.1 At4g30610 829184 BRS1 (BRI1 SUPPRESSOR 1) Encodes a secreted glycosylated serine carboxypeptidase with broad substrate preference that is involved in brassinosteroid signalling via BRI1. It is proteolytically processed in vivo by a separate as yet unidentified protease. O.I. C.G. H.G.
9.0 99.1 38.1 At1g73110 843642 ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative F:ATPase activity, ATP binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast;PBFOAM O.I. C.G. H.G.
8.8 99.0 42.0 At5g66470 836779 GTP binding / RNA binding F:RNA binding, GTP binding;P:unknown;C:chloroplast;BOMAPF O.I. C.G. H.G.
8.7 99.0 66.1 At5g51820 835257 PGM (PHOSPHOGLUCOMUTASE) Encodes a plastid isoform of the enzyme phosphoglucomutase involved in controlling photosynthetic carbon flow. Effective petiole movement against the direction of the gravity requires functional PGM activity that is required for full development of amyloplasts. O.I. C.G. H.G.
8.6 99.0 55.4 At2g47910 819403 CRR6 (chlororespiratory reduction 6) Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
19.3	99.6	161.8	At4g03060	828102	AOP2 (ALKENYL HYDROXALKYL PRODUCING 2)	Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis.	O.I.	C.G.	H.G.
17.9	99.5	18.5	At2g25640	817105	zinc ion binding	F:zinc ion binding;P:transcription;C:nucleus;MFBPO	O.I.	C.G.	H.G.
17.7	99.5	19.3	At2g26630	3768014	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
17.0	99.5	32.7	At4g19830	827727	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid lumen;BMOPFA	O.I.	C.G.	H.G.
11.6	99.3	108.5	At1g72030	843534	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:unknown;PBO	O.I.	C.G.	H.G.
11.6	99.3	31.3	At1g23205	838929	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
11.0	99.2	31.6	At2g27420	817287	cysteine proteinase, putative	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF	O.I.	C.G.	H.G.
10.9	99.2	83.6	At1g16080	838178	unknown protein	F:unknown;P:unknown;C:apoplast, chloroplast stroma, chloroplast, chloroplast envelope;POB	O.I.	C.G.	H.G.
10.5	99.2	49.4	At1g79560	844294	FTSH12 (FTSH PROTEASE 12)	encodes an FtsH protease that is localized to the chloroplast	O.I.	C.G.	H.G.
10.4	99.2	148.5	At4g28080	828923	binding	F:binding;P:unknown;C:unknown;MBFOPAV	O.I.	C.G.	H.G.
10.4	99.2	37.7	At4g12830	826895	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:chloroplast;BOMPFA	O.I.	C.G.	H.G.
10.0	99.2	146.2	At5g51720	835246	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPO	O.I.	C.G.	H.G.
9.9	99.1	55.6	At4g32570	829392	TIFY8 (TIFY DOMAIN PROTEIN 8)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
9.7	99.1	68.1	At3g59980	825168	tRNA-binding region domain-containing protein	F:tRNA binding;P:unknown;C:chloroplast;BOMAFP	O.I.	C.G.	H.G.
9.7	99.1	50.3	At3g01440	821143	oxygen evolving enhancer 3 (PsbQ) family protein	F:calcium ion binding;P:photosynthesis, light reaction;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex;P	O.I.	C.G.	H.G.
9.4	99.1	108.5	At1g14345	837996	oxidoreductase	F:oxidoreductase activity;P:oxidation reduction;C:chloroplast thylakoid membrane, chloroplast, membrane;OBP	O.I.	C.G.	H.G.
9.4	99.1	27.9	At5g58310	835943	MES18 (METHYL ESTERASE 18)	Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
9.2	99.1	31.8	At5g42760	834285	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMF	O.I.	C.G.	H.G.
9.2	99.1	31.1	At4g30610	829184	BRS1 (BRI1 SUPPRESSOR 1)	Encodes a secreted glycosylated serine carboxypeptidase with broad substrate preference that is involved in brassinosteroid signalling via BRI1. It is proteolytically processed in vivo by a separate as yet unidentified protease.	O.I.	C.G.	H.G.
9.0	99.1	38.1	At1g73110	843642	ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative	F:ATPase activity, ATP binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast;PBFOAM	O.I.	C.G.	H.G.
8.8	99.0	42.0	At5g66470	836779	GTP binding / RNA binding	F:RNA binding, GTP binding;P:unknown;C:chloroplast;BOMAPF	O.I.	C.G.	H.G.
8.7	99.0	66.1	At5g51820	835257	PGM (PHOSPHOGLUCOMUTASE)	Encodes a plastid isoform of the enzyme phosphoglucomutase involved in controlling photosynthetic carbon flow. Effective petiole movement against the direction of the gravity requires functional PGM activity that is required for full development of amyloplasts.	O.I.	C.G.	H.G.
8.6	99.0	55.4	At2g47910	819403	CRR6 (chlororespiratory reduction 6)	Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain.	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-TABM-18-raw-cel-489543301
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-TABM-18-raw-cel-489543301 GSE experiment -

GSM ID -

Assay name E-TABM-18-raw-cel-489543301

GSE experiment -