CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-TABM-18-raw-cel-489542684

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
89.4 99.9 81.1 At1g58025 842169 DNA binding F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MOFBPV O.I. C.G. H.G.
30.3 99.7 104.6 At5g26270 832696 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP O.I. C.G. H.G.
20.7 99.6 87.4 At1g52100 841640 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PFO O.I. C.G. H.G.
20.4 99.6 52.8 At4g28780 828999 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
18.9 99.5 69.7 At2g32690 3768391 GRP23 (GLYCINE-RICH PROTEIN 23) Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid. O.I. C.G. H.G.
15.9 99.5 61.9 At5g10140 830878 FLC (FLOWERING LOCUS C) MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3� to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex. O.I. C.G. H.G.
14.3 99.4 34.7 At1g23205 838929 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
13.6 99.4 13.7 At5g41660 834168 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
13.0 99.4 42.2 At4g12830 826895 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:chloroplast;BOMPFA O.I. C.G. H.G.
11.9 99.3 34.5 At5g64050 836526 ERS (GLUTAMATE TRNA SYNTHETASE) Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana. O.I. C.G. H.G.
11.2 99.2 71.4 At4g39970 830158 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast, chloroplast stroma, chloroplast envelope;BOPMFAV O.I. C.G. H.G.
11.2 99.2 67.5 At2g01890 814720 PAP8 (PURPLE ACID PHOSPHATASE 8) Encodes a purple acid phosphatase (PAP) belonging to the low molecular weight plant PAP group. O.I. C.G. H.G.
11.2 99.2 54.1 At3g01440 821143 oxygen evolving enhancer 3 (PsbQ) family protein F:calcium ion binding;P:photosynthesis, light reaction;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex;P O.I. C.G. H.G.
10.6 99.2 67.5 At2g03750 814902 sulfotransferase family protein F:sulfotransferase activity;P:biological_process unknown;C:endomembrane system;MPOBF O.I. C.G. H.G.
10.2 99.2 19.2 At3g63510 825526 FAD binding / catalytic/ tRNA dihydrouridine synthase F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
10.0 99.2 495.5 At1g54040 841842 ESP (EPITHIOSPECIFIER PROTEIN) Epithiospecifier protein, interacts with WRKY53. Involved in pathogen resistance and leaf senescence. O.I. C.G. H.G.
9.6 99.1 109.9 At5g36910 833659 THI2.2 (THIONIN 2.2) Encodes a thionin that is expressed at a low basal level in seedlings and shows circadian variation. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. O.I. C.G. H.G.
9.5 99.1 12.3 At2g39250 818510 SNZ (SCHNARCHZAPFEN) Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering. O.I. C.G. H.G.
9.3 99.1 41.9 At1g14700 838035 PAP3 (PURPLE ACID PHOSPHATASE 3) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:vacuole;MOBPF O.I. C.G. H.G.
9.1 99.1 24.1 At3g48350 823993 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
8.7 99.0 70.7 At3g28290 822455 AT14A Encodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
89.4	99.9	81.1	At1g58025	842169	DNA binding	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MOFBPV	O.I.	C.G.	H.G.
30.3	99.7	104.6	At5g26270	832696	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP	O.I.	C.G.	H.G.
20.7	99.6	87.4	At1g52100	841640	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;PFO	O.I.	C.G.	H.G.
20.4	99.6	52.8	At4g28780	828999	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
18.9	99.5	69.7	At2g32690	3768391	GRP23 (GLYCINE-RICH PROTEIN 23)	Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid.	O.I.	C.G.	H.G.
15.9	99.5	61.9	At5g10140	830878	FLC (FLOWERING LOCUS C)	MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3� to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.	O.I.	C.G.	H.G.
14.3	99.4	34.7	At1g23205	838929	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
13.6	99.4	13.7	At5g41660	834168	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
13.0	99.4	42.2	At4g12830	826895	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:chloroplast;BOMPFA	O.I.	C.G.	H.G.
11.9	99.3	34.5	At5g64050	836526	ERS (GLUTAMATE TRNA SYNTHETASE)	Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.	O.I.	C.G.	H.G.
11.2	99.2	71.4	At4g39970	830158	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast, chloroplast stroma, chloroplast envelope;BOPMFAV	O.I.	C.G.	H.G.
11.2	99.2	67.5	At2g01890	814720	PAP8 (PURPLE ACID PHOSPHATASE 8)	Encodes a purple acid phosphatase (PAP) belonging to the low molecular weight plant PAP group.	O.I.	C.G.	H.G.
11.2	99.2	54.1	At3g01440	821143	oxygen evolving enhancer 3 (PsbQ) family protein	F:calcium ion binding;P:photosynthesis, light reaction;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex;P	O.I.	C.G.	H.G.
10.6	99.2	67.5	At2g03750	814902	sulfotransferase family protein	F:sulfotransferase activity;P:biological_process unknown;C:endomembrane system;MPOBF	O.I.	C.G.	H.G.
10.2	99.2	19.2	At3g63510	825526	FAD binding / catalytic/ tRNA dihydrouridine synthase	F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
10.0	99.2	495.5	At1g54040	841842	ESP (EPITHIOSPECIFIER PROTEIN)	Epithiospecifier protein, interacts with WRKY53. Involved in pathogen resistance and leaf senescence.	O.I.	C.G.	H.G.
9.6	99.1	109.9	At5g36910	833659	THI2.2 (THIONIN 2.2)	Encodes a thionin that is expressed at a low basal level in seedlings and shows circadian variation. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	O.I.	C.G.	H.G.
9.5	99.1	12.3	At2g39250	818510	SNZ (SCHNARCHZAPFEN)	Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.	O.I.	C.G.	H.G.
9.3	99.1	41.9	At1g14700	838035	PAP3 (PURPLE ACID PHOSPHATASE 3)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:vacuole;MOBPF	O.I.	C.G.	H.G.
9.1	99.1	24.1	At3g48350	823993	cysteine proteinase, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
8.7	99.0	70.7	At3g28290	822455	AT14A	Encodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed.	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-TABM-18-raw-cel-489542684
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-TABM-18-raw-cel-489542684 GSE experiment -

GSM ID -

Assay name E-TABM-18-raw-cel-489542684

GSE experiment -