CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-NASC-78-raw-cel-1463195203

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
55.6 99.8 186.3 At5g02020 831782 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
46.9 99.8 425.0 At4g14130 827051 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) xyloglucan endotransglycosylase-related protein (XTR7) O.I. C.G. H.G.
40.1 99.8 46.1 At4g35720 829724 unknown protein F:unknown;P:unknown;C:unknown;PO O.I. C.G. H.G.
37.3 99.7 328.5 At2g39310 818516 JAL22 (JACALIN-RELATED LECTIN 22) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
36.9 99.7 263.8 At5g03240 831899 UBQ3 (POLYUBIQUITIN 3) encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments. O.I. C.G. H.G.
33.3 99.7 1144.1 At2g38530 818435 LTP2 (LIPID TRANSFER PROTEIN 2) Involved in lipid transfer between membranes. Belongs to a family of Lipid transfer proteins. Sequence similarity to other plant/Arabidopsis LPT genes but highest similarity to LPT1. Stress and pathogen-inducible motifs found in the upstream region. Expressed in flower, leaves and siliques but absent in roots. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
32.2 99.7 44.3 At5g57240 835830 ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C) F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOP O.I. C.G. H.G.
30.7 99.7 424.7 At1g70830 843420 MLP28 (MLP-LIKE PROTEIN 28) F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PF O.I. C.G. H.G.
29.9 99.7 191.1 At1g09570 837483 PHYA (PHYTOCHROME A) Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation. O.I. C.G. H.G.
26.8 99.7 877.5 At5g15230 831375 GASA4 (GAST1 PROTEIN HOMOLOG 4) gibberellin-regulated (GASA4) O.I. C.G. H.G.
25.6 99.7 64.0 At5g62280 836349 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
23.4 99.6 386.9 At2g37130 818289 peroxidase 21 (PER21) (P21) (PRXR5) F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus;C:endomembrane system;PFO O.I. C.G. H.G.
23.0 99.6 433.6 At1g70850 843422 MLP34 (MLP-LIKE PROTEIN 34) F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
19.4 99.6 144.2 At3g28740 822506 CYP81D1 Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions. O.I. C.G. H.G.
19.2 99.6 94.3 At5g54190 835507 PORA light-dependent NADPH:protochlorophyllide oxidoreductase A O.I. C.G. H.G.
18.7 99.5 278.0 At1g60740 842368 peroxiredoxin type 2, putative F:oxidoreductase activity, antioxidant activity;P:cell redox homeostasis;C:plasma membrane;OBFPMA O.I. C.G. H.G.
18.5 99.5 79.3 At5g44440 834471 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM O.I. C.G. H.G.
18.3 99.5 402.0 At3g16450 820893 jacalin lectin family protein F:molecular_function unknown;P:response to cold;C:nucleus;PO O.I. C.G. H.G.
17.4 99.5 236.3 At5g63600 836480 FLS5 (FLAVONOL SYNTHASE 5) encodes a protein whose sequence is similar to flavonol synthase O.I. C.G. H.G.
17.4 99.5 24.7 At1g72070 843538 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMPFAV O.I. C.G. H.G.
17.1 99.5 16.8 At1g20390 3766766 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
16.8 99.5 54.1 At1g02340 839300 HFR1 (LONG HYPOCOTYL IN FAR-RED) Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1. O.I. C.G. H.G.
16.7 99.5 11.0 At2g46990 819313 IAA20 (INDOLE-3-ACETIC ACID INDUCIBLE 20) Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA20 lacks the conserved degron (domain II) found in many family members, and IAA20 fusion proteins are stable in Arabidopsis seedlings. IAA20 transcripts are induced by auxin treatment, and overexpression of IAA20 leads to defects in gravitropism, root development, root meristem maintenance, etiolation, and cotyledon vascular development. O.I. C.G. H.G.
16.0 99.5 34.6 At1g30760 839958 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM O.I. C.G. H.G.
15.4 99.5 283.5 At4g35750 829728 Rho-GTPase-activating protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO O.I. C.G. H.G.
14.9 99.4 725.8 At2g05380 815086 GRP3S (GLYCINE-RICH PROTEIN 3 SHORT ISOFORM) glycine-rich protein 3 short isoform (GRP3S) mRNA, complete O.I. C.G. H.G.
14.4 99.4 323.1 At2g05540 815103 glycine-rich protein F:unknown;P:unknown;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
14.3 99.4 97.3 At4g17730 827494 SYP23 (SYNTAXIN OF PLANTS 23) member of SYP2 Gene Family O.I. C.G. H.G.
14.3 99.4 9.4 At3g01450 821140 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
14.0 99.4 195.3 At1g28330 839729 DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1) dormancy-associated protein (DRM1) O.I. C.G. H.G.
13.7 99.4 119.8 At1g12080 837760 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
13.5 99.4 15.2 At1g43590 840943 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
13.1 99.4 75.0 At2g18050 816317 HIS1-3 (HISTONE H1-3) encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA. O.I. C.G. H.G.
12.7 99.3 258.2 At5g65660 836692 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PMOF O.I. C.G. H.G.
12.7 99.3 6.5 At2g16190 816116 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
12.5 99.3 161.6 At5g18650 831983 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFA O.I. C.G. H.G.
12.1 99.3 50.8 At3g60530 825224 zinc finger (GATA type) family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM O.I. C.G. H.G.
11.9 99.3 73.0 At4g11190 826721 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
11.7 99.3 54.3 At1g20160 838606 ATSBT5.2 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOFMA O.I. C.G. H.G.
11.6 99.3 713.2 At3g09260 820082 PYK10 Encodes beta-glucosidase.The major constituent of ER bodies. One of the most abundant proteins in Arabidopsis seedlings. Exist in an soluble (inactive) and non-soluble (active) form, most probably formed in a polymerization process. Involved in the mutualistic interaction between Arabidopsis and the endophytic fungus Piriformospora indica. O.I. C.G. H.G.
11.6 99.3 260.0 At3g48740 824035 nodulin MtN3 family protein F:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOB O.I. C.G. H.G.
11.4 99.3 110.5 At1g10070 837543 ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. O.I. C.G. H.G.
11.4 99.3 7.4 At5g57670 835873 - - O.I. C.G. H.G.
11.3 99.3 566.6 At3g16420 820890 PBP1 (PYK10-BINDING PROTEIN 1) The PBP1(PYK10-binding protein 1) assists the PYK10 (beta-glucosidase complex) in its activity and may act like a molecular chaperone that facilitates the correct polymerization of PYK10, when tissues are damaged and subcellular structures are destroyed by pests. O.I. C.G. H.G.
11.1 99.2 53.9 At2g26980 817240 CIPK3 (CBL-INTERACTING PROTEIN KINASE 3) encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers. O.I. C.G. H.G.
11.0 99.2 774.8 At5g14740 831326 CA2 (CARBONIC ANHYDRASE 2) Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform. O.I. C.G. H.G.
11.0 99.2 20.6 At5g67060 836841 HEC1 (HECATE 1) F:transcription factor activity;P:transmitting tissue development, carpel formation, regulation of transcription;C:nucleus;PMBOFA O.I. C.G. H.G.
10.8 99.2 165.0 At3g01520 821122 universal stress protein (USP) family protein F:molecular_function unknown;P:N-terminal protein myristoylation, response to stress;C:plasma membrane;BPAMOF O.I. C.G. H.G.
10.7 99.2 14.6 At4g37580 829913 HLS1 (HOOKLESS 1) involved in apical hook development. putative N-acetyltransferase O.I. C.G. H.G.
10.5 99.2 359.1 At3g16390 820886 NSP3 (NITRILE SPECIFIER PROTEIN 3) Encodes a nitrile-specifier protein NSP3. NSP3 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation. O.I. C.G. H.G.
10.5 99.2 22.0 At1g75450 843881 CKX5 (CYTOKININ OXIDASE 5) This gene used to be called AtCKX6. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins. O.I. C.G. H.G.
10.4 99.2 75.2 At2g03890 814915 phosphatidylinositol 3- and 4-kinase family protein F:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:unknown;C:cellular_component unknown;MPOFB O.I. C.G. H.G.
10.4 99.2 42.7 At5g53980 835481 ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. O.I. C.G. H.G.
10.1 99.2 90.8 At5g06370 830525 NC domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBMO O.I. C.G. H.G.
10.1 99.2 52.8 At3g17100 820967 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus, chloroplast;PM O.I. C.G. H.G.
10.0 99.2 165.3 At3g10985 2745879 SAG20 (SENESCENCE ASSOCIATED GENE 20) A senescence-associated gene whose expression is induced in response to treatment with Nep1, a fungal protein that causes necrosis. O.I. C.G. H.G.
9.9 99.1 110.4 At1g06570 837168 PDS1 (PHYTOENE DESATURATION 1) Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants. O.I. C.G. H.G.
9.7 99.1 279.2 At5g49360 834996 BXL1 (BETA-XYLOSIDASE 1) Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members. O.I. C.G. H.G.
9.7 99.1 61.2 At3g51880 824351 HMGB1 (HIGH MOBILITY GROUP B 1) Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. In interphase cells, HMGB1 is found throughout the nucleus, whereas in mitotic cells it is not chromatin-associated. O.I. C.G. H.G.
9.6 99.1 158.2 At1g58030 842170 CAT2 (CATIONIC AMINO ACID TRANSPORTER 2) Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Localized to the tonoplast. O.I. C.G. H.G.
9.5 99.1 118.5 At3g52060 824369 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB O.I. C.G. H.G.
9.4 99.1 214.1 At5g56870 835789 BGAL4 (beta-galactosidase 4) F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PBMFOA O.I. C.G. H.G.
9.4 99.1 39.8 At1g76410 843974 ATL8 F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
9.3 99.1 168.8 At3g18280 821356 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
9.2 99.1 396.0 At4g23670 828467 major latex protein-related / MLP-related F:copper ion binding;P:response to cadmium ion, response to salt stress, defense response to bacterium;C:vacuole;P O.I. C.G. H.G.
9.2 99.1 66.9 At1g10140 837551 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO O.I. C.G. H.G.
9.2 99.1 23.3 At5g44260 834449 zinc finger (CCCH-type) family protein F:transcription factor activity, nucleic acid binding;P:unknown;C:unknown;MOPFV O.I. C.G. H.G.
9.2 99.1 10.3 At3g29370 822596 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.1 99.1 67.4 At1g67910 843119 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
9.0 99.1 20.7 At3g25710 822159 BHLH32 (BASIC HELIX-LOOP-HELIX 32) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
9.0 99.1 16.4 At4g37890 829945 EDA40 (embryo sac development arrest 40) F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:polar nucleus fusion;C:plasma membrane;PBOFM O.I. C.G. H.G.
9.0 99.1 6.9 At4g10240 826615 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POM O.I. C.G. H.G.
8.9 99.0 412.8 At1g62380 842536 ACO2 (ACC OXIDASE 2) Encodes a protein similar to 1-aminocyclopropane-1-carboxylic oxidase (ACC oxidase). Expression of the AtACO2 transcripts is affected by ethylene. O.I. C.G. H.G.
8.8 99.0 32.8 At5g05750 830459 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
8.7 99.0 78.8 At5g22500 832311 FAR1 (FATTY ACID REDUCTASE 1) F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:chloroplast;MBFOP O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
55.6	99.8	186.3	At5g02020	831782	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
46.9	99.8	425.0	At4g14130	827051	XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)	xyloglucan endotransglycosylase-related protein (XTR7)	O.I.	C.G.	H.G.
40.1	99.8	46.1	At4g35720	829724	unknown protein	F:unknown;P:unknown;C:unknown;PO	O.I.	C.G.	H.G.
37.3	99.7	328.5	At2g39310	818516	JAL22 (JACALIN-RELATED LECTIN 22)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
36.9	99.7	263.8	At5g03240	831899	UBQ3 (POLYUBIQUITIN 3)	encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments.	O.I.	C.G.	H.G.
33.3	99.7	1144.1	At2g38530	818435	LTP2 (LIPID TRANSFER PROTEIN 2)	Involved in lipid transfer between membranes. Belongs to a family of Lipid transfer proteins. Sequence similarity to other plant/Arabidopsis LPT genes but highest similarity to LPT1. Stress and pathogen-inducible motifs found in the upstream region. Expressed in flower, leaves and siliques but absent in roots. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
32.2	99.7	44.3	At5g57240	835830	ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C)	F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
30.7	99.7	424.7	At1g70830	843420	MLP28 (MLP-LIKE PROTEIN 28)	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
29.9	99.7	191.1	At1g09570	837483	PHYA (PHYTOCHROME A)	Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.	O.I.	C.G.	H.G.
26.8	99.7	877.5	At5g15230	831375	GASA4 (GAST1 PROTEIN HOMOLOG 4)	gibberellin-regulated (GASA4)	O.I.	C.G.	H.G.
25.6	99.7	64.0	At5g62280	836349	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
23.4	99.6	386.9	At2g37130	818289	peroxidase 21 (PER21) (P21) (PRXR5)	F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus;C:endomembrane system;PFO	O.I.	C.G.	H.G.
23.0	99.6	433.6	At1g70850	843422	MLP34 (MLP-LIKE PROTEIN 34)	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.4	99.6	144.2	At3g28740	822506	CYP81D1	Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions.	O.I.	C.G.	H.G.
19.2	99.6	94.3	At5g54190	835507	PORA	light-dependent NADPH:protochlorophyllide oxidoreductase A	O.I.	C.G.	H.G.
18.7	99.5	278.0	At1g60740	842368	peroxiredoxin type 2, putative	F:oxidoreductase activity, antioxidant activity;P:cell redox homeostasis;C:plasma membrane;OBFPMA	O.I.	C.G.	H.G.
18.5	99.5	79.3	At5g44440	834471	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM	O.I.	C.G.	H.G.
18.3	99.5	402.0	At3g16450	820893	jacalin lectin family protein	F:molecular_function unknown;P:response to cold;C:nucleus;PO	O.I.	C.G.	H.G.
17.4	99.5	236.3	At5g63600	836480	FLS5 (FLAVONOL SYNTHASE 5)	encodes a protein whose sequence is similar to flavonol synthase	O.I.	C.G.	H.G.
17.4	99.5	24.7	At1g72070	843538	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMPFAV	O.I.	C.G.	H.G.
17.1	99.5	16.8	At1g20390	3766766	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
16.8	99.5	54.1	At1g02340	839300	HFR1 (LONG HYPOCOTYL IN FAR-RED)	Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1.	O.I.	C.G.	H.G.
16.7	99.5	11.0	At2g46990	819313	IAA20 (INDOLE-3-ACETIC ACID INDUCIBLE 20)	Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA20 lacks the conserved degron (domain II) found in many family members, and IAA20 fusion proteins are stable in Arabidopsis seedlings. IAA20 transcripts are induced by auxin treatment, and overexpression of IAA20 leads to defects in gravitropism, root development, root meristem maintenance, etiolation, and cotyledon vascular development.	O.I.	C.G.	H.G.
16.0	99.5	34.6	At1g30760	839958	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM	O.I.	C.G.	H.G.
15.4	99.5	283.5	At4g35750	829728	Rho-GTPase-activating protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO	O.I.	C.G.	H.G.
14.9	99.4	725.8	At2g05380	815086	GRP3S (GLYCINE-RICH PROTEIN 3 SHORT ISOFORM)	glycine-rich protein 3 short isoform (GRP3S) mRNA, complete	O.I.	C.G.	H.G.
14.4	99.4	323.1	At2g05540	815103	glycine-rich protein	F:unknown;P:unknown;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
14.3	99.4	97.3	At4g17730	827494	SYP23 (SYNTAXIN OF PLANTS 23)	member of SYP2 Gene Family	O.I.	C.G.	H.G.
14.3	99.4	9.4	At3g01450	821140	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
14.0	99.4	195.3	At1g28330	839729	DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)	dormancy-associated protein (DRM1)	O.I.	C.G.	H.G.
13.7	99.4	119.8	At1g12080	837760	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
13.5	99.4	15.2	At1g43590	840943	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
13.1	99.4	75.0	At2g18050	816317	HIS1-3 (HISTONE H1-3)	encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.	O.I.	C.G.	H.G.
12.7	99.3	258.2	At5g65660	836692	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PMOF	O.I.	C.G.	H.G.
12.7	99.3	6.5	At2g16190	816116	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
12.5	99.3	161.6	At5g18650	831983	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFA	O.I.	C.G.	H.G.
12.1	99.3	50.8	At3g60530	825224	zinc finger (GATA type) family protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM	O.I.	C.G.	H.G.
11.9	99.3	73.0	At4g11190	826721	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
11.7	99.3	54.3	At1g20160	838606	ATSBT5.2	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOFMA	O.I.	C.G.	H.G.
11.6	99.3	713.2	At3g09260	820082	PYK10	Encodes beta-glucosidase.The major constituent of ER bodies. One of the most abundant proteins in Arabidopsis seedlings. Exist in an soluble (inactive) and non-soluble (active) form, most probably formed in a polymerization process. Involved in the mutualistic interaction between Arabidopsis and the endophytic fungus Piriformospora indica.	O.I.	C.G.	H.G.
11.6	99.3	260.0	At3g48740	824035	nodulin MtN3 family protein	F:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOB	O.I.	C.G.	H.G.
11.4	99.3	110.5	At1g10070	837543	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)	Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.	O.I.	C.G.	H.G.
11.4	99.3	7.4	At5g57670	835873	-	-	O.I.	C.G.	H.G.
11.3	99.3	566.6	At3g16420	820890	PBP1 (PYK10-BINDING PROTEIN 1)	The PBP1(PYK10-binding protein 1) assists the PYK10 (beta-glucosidase complex) in its activity and may act like a molecular chaperone that facilitates the correct polymerization of PYK10, when tissues are damaged and subcellular structures are destroyed by pests.	O.I.	C.G.	H.G.
11.1	99.2	53.9	At2g26980	817240	CIPK3 (CBL-INTERACTING PROTEIN KINASE 3)	encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers.	O.I.	C.G.	H.G.
11.0	99.2	774.8	At5g14740	831326	CA2 (CARBONIC ANHYDRASE 2)	Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.	O.I.	C.G.	H.G.
11.0	99.2	20.6	At5g67060	836841	HEC1 (HECATE 1)	F:transcription factor activity;P:transmitting tissue development, carpel formation, regulation of transcription;C:nucleus;PMBOFA	O.I.	C.G.	H.G.
10.8	99.2	165.0	At3g01520	821122	universal stress protein (USP) family protein	F:molecular_function unknown;P:N-terminal protein myristoylation, response to stress;C:plasma membrane;BPAMOF	O.I.	C.G.	H.G.
10.7	99.2	14.6	At4g37580	829913	HLS1 (HOOKLESS 1)	involved in apical hook development. putative N-acetyltransferase	O.I.	C.G.	H.G.
10.5	99.2	359.1	At3g16390	820886	NSP3 (NITRILE SPECIFIER PROTEIN 3)	Encodes a nitrile-specifier protein NSP3. NSP3 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.	O.I.	C.G.	H.G.
10.5	99.2	22.0	At1g75450	843881	CKX5 (CYTOKININ OXIDASE 5)	This gene used to be called AtCKX6. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.	O.I.	C.G.	H.G.
10.4	99.2	75.2	At2g03890	814915	phosphatidylinositol 3- and 4-kinase family protein	F:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:unknown;C:cellular_component unknown;MPOFB	O.I.	C.G.	H.G.
10.4	99.2	42.7	At5g53980	835481	ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	O.I.	C.G.	H.G.
10.1	99.2	90.8	At5g06370	830525	NC domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBMO	O.I.	C.G.	H.G.
10.1	99.2	52.8	At3g17100	820967	transcription factor	F:transcription factor activity;P:regulation of transcription;C:nucleus, chloroplast;PM	O.I.	C.G.	H.G.
10.0	99.2	165.3	At3g10985	2745879	SAG20 (SENESCENCE ASSOCIATED GENE 20)	A senescence-associated gene whose expression is induced in response to treatment with Nep1, a fungal protein that causes necrosis.	O.I.	C.G.	H.G.
9.9	99.1	110.4	At1g06570	837168	PDS1 (PHYTOENE DESATURATION 1)	Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants.	O.I.	C.G.	H.G.
9.7	99.1	279.2	At5g49360	834996	BXL1 (BETA-XYLOSIDASE 1)	Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members.	O.I.	C.G.	H.G.
9.7	99.1	61.2	At3g51880	824351	HMGB1 (HIGH MOBILITY GROUP B 1)	Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. In interphase cells, HMGB1 is found throughout the nucleus, whereas in mitotic cells it is not chromatin-associated.	O.I.	C.G.	H.G.
9.6	99.1	158.2	At1g58030	842170	CAT2 (CATIONIC AMINO ACID TRANSPORTER 2)	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Localized to the tonoplast.	O.I.	C.G.	H.G.
9.5	99.1	118.5	At3g52060	824369	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB	O.I.	C.G.	H.G.
9.4	99.1	214.1	At5g56870	835789	BGAL4 (beta-galactosidase 4)	F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PBMFOA	O.I.	C.G.	H.G.
9.4	99.1	39.8	At1g76410	843974	ATL8	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
9.3	99.1	168.8	At3g18280	821356	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
9.2	99.1	396.0	At4g23670	828467	major latex protein-related / MLP-related	F:copper ion binding;P:response to cadmium ion, response to salt stress, defense response to bacterium;C:vacuole;P	O.I.	C.G.	H.G.
9.2	99.1	66.9	At1g10140	837551	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO	O.I.	C.G.	H.G.
9.2	99.1	23.3	At5g44260	834449	zinc finger (CCCH-type) family protein	F:transcription factor activity, nucleic acid binding;P:unknown;C:unknown;MOPFV	O.I.	C.G.	H.G.
9.2	99.1	10.3	At3g29370	822596	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.1	99.1	67.4	At1g67910	843119	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
9.0	99.1	20.7	At3g25710	822159	BHLH32 (BASIC HELIX-LOOP-HELIX 32)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
9.0	99.1	16.4	At4g37890	829945	EDA40 (embryo sac development arrest 40)	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:polar nucleus fusion;C:plasma membrane;PBOFM	O.I.	C.G.	H.G.
9.0	99.1	6.9	At4g10240	826615	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POM	O.I.	C.G.	H.G.
8.9	99.0	412.8	At1g62380	842536	ACO2 (ACC OXIDASE 2)	Encodes a protein similar to 1-aminocyclopropane-1-carboxylic oxidase (ACC oxidase). Expression of the AtACO2 transcripts is affected by ethylene.	O.I.	C.G.	H.G.
8.8	99.0	32.8	At5g05750	830459	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
8.7	99.0	78.8	At5g22500	832311	FAR1 (FATTY ACID REDUCTASE 1)	F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:chloroplast;MBFOP	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-NASC-78-raw-cel-1463195203
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-NASC-78-raw-cel-1463195203 GSE experiment -

GSM ID -

Assay name E-NASC-78-raw-cel-1463195203

GSE experiment -