Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-MEXP-98-raw-cel-320188859
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
279.5100.0366.9At2g27690817315CYP94C1Encodes a CYP94C1. Has highest omega-hydroxylase activity with 9,10-epoxystearic acid, while also metabolized lauric acid (C12:0) and C18 unsaturated fatty acids. Gene expression is induced in response to wounding and jasmonic acid treatment.O.I.C.G.H.G.
209.4100.0205.4At4g38420829999sks9 (SKU5 Similar 9)F:oxidoreductase activity, copper ion binding;P:unknown;C:plant-type cell wall;FBPMOAO.I.C.G.H.G.
180.7100.0192.6At2g34930818058disease resistance family proteinF:protein binding;P:signal transduction, defense response to fungus, defense response;C:cell wall;PMOBFAVO.I.C.G.H.G.
179.2100.0150.9At4g08170826367inositol 1,3,4-trisphosphate 5/6-kinase family proteinF:magnesium ion binding, inositol-1,3,4-trisphosphate 5/6-kinase activity, catalytic activity, ATP binding, inositol tetrakisphosphate 1-kinase activity;P:response to wounding;C:nucleus, cytoplasm;PMOBO.I.C.G.H.G.
175.3100.0215.4At3g63380825513calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)F:calmodulin binding, calcium-transporting ATPase activity;P:calcium ion transport, cation transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAVO.I.C.G.H.G.
165.1100.092.5At1g72790843610hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;MPFOBVAO.I.C.G.H.G.
157.899.952.6At2g31010817652protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVAO.I.C.G.H.G.
147.399.9149.6At5g24030832468SLAH3 (SLAC1 HOMOLOGUE 3)Encodes a protein with ten predicted transmembrane helices. The SLAH3 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement an slac1-2 mutant suggesting that it performs a similar function. SLAH3:GFP localizes to the plasma membrane.O.I.C.G.H.G.
116.499.990.6At4g32800829416AP2 domain-containing transcription factor TINY, putativeencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
109.599.9391.1At1g35140840399PHI-1 (PHOSPHATE-INDUCED 1)At1g35140 (At1g35140/T32G9_32) mRNA, complete cdsO.I.C.G.H.G.
106.499.967.4At1g77640844099AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
92.599.9239.1At1g15010838066unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBO.I.C.G.H.G.
91.299.9202.3At2g27500817295glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, nucleus, cytoplasm;PFOO.I.C.G.H.G.
85.699.9120.3At4g21410827893protein kinase family proteinF:kinase activity;P:response to abscisic acid stimulus;C:plasma membrane, vacuole;MPOBFVAO.I.C.G.H.G.
83.799.997.2At3g62150825388PGP21 (P-GLYCOPROTEIN 21)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPVO.I.C.G.H.G.
83.799.972.6At4g21400827892protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
80.599.9116.0At5g38710833862proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putativeF:proline dehydrogenase activity;P:proline catabolic process, glutamate biosynthetic process;C:unknown;BOMFPVAO.I.C.G.H.G.
78.299.9134.0At5g52050835280MATE efflux protein-relatedF:drug transporter activity, antiporter activity;P:multidrug transport;C:membrane;BOPFAMO.I.C.G.H.G.
77.199.9121.6At4g03400827938DFL2 (DWARF IN LIGHT 2)Encodes a GH3-related gene involved in red light-specific hypocotyl elongation. Analysis of sense and antisense transgenic plants suggests that DFL2 is located downstream of red light signal transduction and determines the degree of hypocotyl elongation.O.I.C.G.H.G.
76.899.978.2At3g16860820941COBL8 (COBRA-LIKE PROTEIN 8 PRECURSOR)F:unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
72.499.939.3At3g25870822182unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
72.399.9257.1At3g59350825104serine/threonine protein kinase, putativeF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
71.999.9204.7At5g55050835596GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
71.199.9365.4At2g38240818403oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:response to salt stress;C:unknown;POBFMO.I.C.G.H.G.
70.899.960.5At1g26730839214EXS family protein / ERD1/XPR1/SYG1 family proteinF:unknown;P:unknown;C:integral to membrane, plasma membrane;FMPOBO.I.C.G.H.G.
69.699.9113.9At1g02660839544lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
68.399.9169.6At3g212308216774CL5 (4-coumarate:CoA ligase 5)The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo.O.I.C.G.H.G.
67.999.940.9At2g38250818404DNA-binding protein-relatedF:transcription factor activity;P:regulation of transcription;C:nucleolus;MOFPBVO.I.C.G.H.G.
65.299.8196.8At5g65630836689GTE7 (Global transcription factor group E 7)This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE7 show some resistance to agrobacterium-mediated root transformation.O.I.C.G.H.G.
63.799.8123.3At1g11210837662unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;POO.I.C.G.H.G.
61.099.8168.1At1g57630842139disease resistance protein (TIR class), putativeF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PO.I.C.G.H.G.
60.499.898.8At1g35350840424-F:unknown;P:unknown;C:integral to membrane;FMPOBO.I.C.G.H.G.
60.199.852.6At5g46330834676FLS2 (FLAGELLIN-SENSITIVE 2)Encodes a leucine-rich repeat serine/threonine protein kinase that is expressed ubiquitously. FLS2 is involved in MAP kinase signalling relay involved in innate immunity. Essential in the perception of flagellin, a potent elicitor of the defense response. FLS2 is directed for degradation by the bacterial ubiquitin ligase AvrPtoB.O.I.C.G.H.G.
59.699.852.6At2g42010818802PLDBETA1 (PHOSPHOLIPASE D BETA 1)phospholipase D (PLDbeta)O.I.C.G.H.G.
58.599.8194.2At4g26690828776SHV3 (SHAVEN 3)Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development.O.I.C.G.H.G.
57.699.844.0At3g05320819696unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO.I.C.G.H.G.
57.299.8135.0At1g02400839508GA2OX6 (GIBBERELLIN 2-OXIDASE 6)Encodes a gibberellin 2-oxidase.O.I.C.G.H.G.
56.799.886.2At5g43170834334AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3)Encodes zinc finger protein. mRNA levels are elevated in response to high salinity and low temperature. The protein is localized to the nucleus and acts as a transcriptional repressor.O.I.C.G.H.G.
56.199.851.3At1g75310843868AUL1F:heat shock protein binding;P:protein folding;C:unknown;MOBFPVAO.I.C.G.H.G.
55.399.877.4At3g58620825031TTL4 (Tetratricopetide-repeat Thioredoxin-Like 4)F:binding;P:cell redox homeostasis;C:cellular_component unknown;MBOFPAVO.I.C.G.H.G.
54.799.880.0At3g55840824750-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
54.399.8254.5At3g57550824922AGK2 (GUANYLATE KINASE)guanylate kinaseO.I.C.G.H.G.
54.299.8196.8At3g09940820155MDHAR (MONODEHYDROASCORBATE REDUCTASE)Encodes a member of the monodehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.O.I.C.G.H.G.
53.599.8305.6At5g62360836357invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
53.499.895.5At3g50770824241calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:chloroplast;MFPOBO.I.C.G.H.G.
51.399.8177.2At4g36010829757pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:anchored to membrane;PMFBOVO.I.C.G.H.G.
50.599.821.4At4g00130825649-F:unknown;P:biological_process unknown;C:mitochondrion;POO.I.C.G.H.G.
50.499.857.3At5g23850832450-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBVAO.I.C.G.H.G.
50.499.843.9At1g25370839122unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
49.999.8175.5At3g25780822169AOC3 (ALLENE OXIDE CYCLASE 3)Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis. One of four genes in Arabidopsis that encode this enzyme. mRNA expression is upregulated in senescing leaves. Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3, AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology, 128:876-884.O.I.C.G.H.G.
49.899.846.1At2g29120817460ATGLR2.7member of Putative ligand-gated ion channel subunit familyO.I.C.G.H.G.
49.399.867.2At1g50460841468HKL1 (HEXOKINASE-LIKE 1)F:hexokinase activity, fructokinase activity, glucokinase activity, ATP binding;P:response to salt stress, response to cold, response to osmotic stress;C:mitochondrion, plastid;MFPOBO.I.C.G.H.G.
48.099.8152.3At1g17380838310JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5)F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;PO.I.C.G.H.G.
46.899.850.0At1g11960837748-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;FPMOBO.I.C.G.H.G.
46.099.8108.7At3g45040823639phosphatidate cytidylyltransferase family proteinEncodes a putative dolichol kinase.O.I.C.G.H.G.
45.399.850.8At2g15390816031FUT4Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundant with FUT1.O.I.C.G.H.G.
45.299.828.9At5g04020830281calmodulin bindingF:calmodulin binding;P:biological_process unknown;C:plasma membrane;OMBPFAVO.I.C.G.H.G.
44.799.8180.3At3g62720825446XT1 (XYLOSYLTRANSFERASE 1)Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides.O.I.C.G.H.G.
44.699.8543.5At4g08950826473EXO (EXORDIUM)F:molecular_function unknown;P:response to brassinosteroid stimulus;C:cell wall, plant-type cell wall;PBO.I.C.G.H.G.
44.399.8106.5At5g54380835526THE1 (THESEUS1)F:protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
43.799.8107.2At5g25440832618protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:nucleus, cytoplasm;MPOBFVAO.I.C.G.H.G.
43.699.8261.1At4g30280829151XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18)putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.O.I.C.G.H.G.
43.199.890.8At5g56980835800unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO.I.C.G.H.G.
42.799.8150.4At1g17620838339-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
42.799.8140.4At2g44500819057unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
42.399.8271.1At5g26030832672FC1 (ferrochelatase 1)encodes ferrochelatase I located in plastids. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteinsO.I.C.G.H.G.
42.199.8150.2At3g14050820619RSH2 (RELA-SPOT HOMOLOG 2)F:GTP diphosphokinase activity;P:response to abscisic acid stimulus, response to wounding;C:chloroplast;BOMPFAVO.I.C.G.H.G.
42.199.840.2At1g27910839684PUB45 (PLANT U-BOX 45)Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.O.I.C.G.H.G.
41.599.863.4At1g78280844163transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:cell surface receptor linked signal transduction;C:cellular_component unknown;MBOFPO.I.C.G.H.G.
41.099.8137.8At5g16910831554CSLD2 (CELLULOSE-SYNTHASE LIKE D2)encodes a gene similar to cellulose synthase. Located in golgi membranes.O.I.C.G.H.G.
40.599.874.2At1g53430841778leucine-rich repeat family protein / protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.C.G.H.G.
40.499.824.8At5g26770832735unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
40.099.8261.1At4g24380828540unknown proteinF:unknown;P:10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process;C:unknown;FMPOBO.I.C.G.H.G.
40.099.8126.4At1g21910838793AP2 domain-containing transcription factor family proteinencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
38.999.873.8At2g17480816254MLO8 (MILDEW RESISTANCE LOCUS O 8)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO8 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO9, and AtMLO10. The gene is expressed during seedling growth, in cotyledons and hypocotyl, and in fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).O.I.C.G.H.G.
37.999.8210.7At4g29670829088thioredoxin family proteinEncodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase.O.I.C.G.H.G.
37.999.879.6At3g54150824582embryo-abundant protein-relatedF:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOAO.I.C.G.H.G.
37.699.7108.7At3g54810824646zinc finger (GATA type) family proteinEncodes a protein containing a GATA type zinc finger domain that is expressed in the embryo axis and involved in germination. Mutants have a reduced rate of germination even when stratified.O.I.C.G.H.G.
37.099.7177.2At3g19680821505unknown proteinF:unknown;P:unknown;C:plasma membrane;OPMBFO.I.C.G.H.G.
36.499.771.8At4g01250827896WRKY22member of WRKY Transcription Factor; Group II-eO.I.C.G.H.G.
36.399.795.5At3g27960822420kinesin light chain-relatedF:binding;P:biological_process unknown;C:plasma membrane;MBOFPAVO.I.C.G.H.G.
35.699.7235.3At1g72450843577JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)JAZ6 transcript levels rise in response to a jasmonate stimulus and a GFP:JAZ6 fusion protein localizes to the nucleus. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ6:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation.O.I.C.G.H.G.
35.199.7206.1At5g13200831159GRAM domain-containing protein / ABA-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
34.999.7174.7At2g47440819357DNAJ heat shock N-terminal domain-containing proteinF:binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
34.599.7309.7At4g14365827080zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVAO.I.C.G.H.G.
34.599.7147.1At3g56200824786amino acid transporter family proteinEncodes a putative amino acid transporter.O.I.C.G.H.G.
34.499.757.9At5g60860836207AtRABA1f (Arabidopsis Rab GTPase homolog A1f)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBAVO.I.C.G.H.G.
34.099.763.1At2g01300814658unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
33.799.7173.8At1g25560839143TEM1 (TEMPRANILLO 1)Encodes a member of the RAV transcription factor family that contains AP2 and B3 binding domains. Involved in the regulation of flowering under long days. Loss of function results in early flowering. Overexpression causes late flowering and repression of expression of FT.O.I.C.G.H.G.
32.699.7226.2At5g05600830443oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, iron ion binding;P:response to salt stress;C:unknown;POBFMO.I.C.G.H.G.
32.099.798.0At1g22570838863proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;BPOMFO.I.C.G.H.G.
31.999.745.0At5g66640836796DAR3 (DA1-RELATED PROTEIN 3)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBFO.I.C.G.H.G.
31.999.720.5At1g74330843774ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;MPOFBVAO.I.C.G.H.G.
31.899.7239.2At5g51070835180ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1)ATP-dependent Clp protease regulatory subunitO.I.C.G.H.G.
31.699.777.6At1g01560839523ATMPK11member of MAP KinaseO.I.C.G.H.G.
31.499.7188.3At5g05440830427unknown proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
31.099.741.1At3g02140821182TMAC2 (TWO OR MORE ABRES-CONTAINING GENE 2)Encodes a protein that acts in the nucleus and is an important negative regulator of ABA and salt stress responses, and could play a critical role in controlling root elongation, floral initiation and starch degradation.O.I.C.G.H.G.
30.699.7107.3At2g22880816819VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
30.699.7101.3At1g68410843170protein phosphatase 2C-related / PP2C-relatedF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFBVO.I.C.G.H.G.
30.699.758.1At3g23590821938RFR1 (REF4-related 1)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.



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