CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-849-raw-cel-1181981046

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
301.8 100.0 311.6 At1g43780 840974 scpl44 (serine carboxypeptidase-like 44) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO O.I. C.G. H.G.
142.3 99.9 44.5 At4g11140 826715 CRF1 (CYTOKININ RESPONSE FACTOR 1) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1). O.I. C.G. H.G.
112.8 99.9 86.3 At3g12860 820468 nucleolar protein Nop56, putative F:unknown;P:biological_process unknown;C:unknown;MOFPBAV O.I. C.G. H.G.
108.6 99.9 28.1 At1g72570 843589 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBV O.I. C.G. H.G.
104.1 99.9 85.6 At3g15720 820815 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane, plant-type cell wall;FPBOMAV O.I. C.G. H.G.
99.6 99.9 366.2 At5g14450 831296 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOM O.I. C.G. H.G.
96.6 99.9 168.0 At5g45650 834605 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM O.I. C.G. H.G.
94.0 99.9 220.2 At1g04870 839393 PRMT10 Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts. O.I. C.G. H.G.
87.4 99.9 363.1 At5g05290 830411 ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
79.8 99.9 86.0 At4g24150 828515 AtGRF8 (GROWTH-REGULATING FACTOR 8) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower. O.I. C.G. H.G.
78.6 99.9 26.8 At5g17490 831615 RGL3 (RGA-LIKE PROTEIN 3) DELLA subfamily member involved in GA signal transduction O.I. C.G. H.G.
75.7 99.9 283.4 At1g26770 839218 ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
75.3 99.9 308.5 At1g02640 837940 BXL2 (BETA-XYLOSIDASE 2) encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members. O.I. C.G. H.G.
75.2 99.9 68.0 At2g40010 818589 60S acidic ribosomal protein P0 (RPP0A) F:structural constituent of ribosome;P:translational elongation, translation, ribosome biogenesis;C:cytosolic ribosome, ribosome;MOAFPB O.I. C.G. H.G.
71.9 99.9 102.7 At5g13870 831233 EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4) EXGT-A4, endoxyloglucan transferase, O.I. C.G. H.G.
71.1 99.9 40.7 At1g02370 837735 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:unknown;POMFB O.I. C.G. H.G.
71.0 99.9 96.7 At3g06530 819831 binding F:binding;P:unknown;C:chloroplast, vacuole;MFOPB O.I. C.G. H.G.
70.3 99.9 54.6 At4g19240 827664 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
69.0 99.9 296.2 At1g75830 843916 LCR67 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
66.0 99.8 54.3 At4g23750 828475 CRF2 (CYTOKININ RESPONSE FACTOR 2) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
62.3 99.8 23.9 At3g12770 820459 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
60.9 99.8 150.9 At4g29510 829072 PRMT11 (ARGININE METHYLTRANSFERASE 11) Has arginine N-methyltransferase activity. Modifies AtMBD7. O.I. C.G. H.G.
60.1 99.8 358.0 At4g36880 829841 CP1 (CYSTEINE PROTEINASE1) F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
59.9 99.8 99.5 At4g05410 825889 transducin family protein / WD-40 repeat family protein F:nucleotide binding, nucleic acid binding;P:mitochondrial fission;C:nucleolus, small nucleolar ribonucleoprotein complex, anaphase-promoting complex, CUL4 RING ubiquitin ligase complex;MFOBPVA O.I. C.G. H.G.
56.0 99.8 67.7 At4g02400 828039 - F:molecular_function unknown;P:rRNA processing;C:small-subunit processome;MOFBPVA O.I. C.G. H.G.
56.0 99.8 65.3 At5g54300 835518 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBA O.I. C.G. H.G.
55.6 99.8 190.8 At1g29980 839877 - F:unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;PB O.I. C.G. H.G.
55.6 99.8 53.3 At1g16280 838197 DEAD/DEAH box helicase, putative F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
53.5 99.8 276.8 At5g08260 830722 scpl35 (serine carboxypeptidase-like 35) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
52.2 99.8 72.1 At2g19385 816457 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:intracellular;MOFPB O.I. C.G. H.G.
51.5 99.8 223.4 At1g52930 841726 brix domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;MFOP O.I. C.G. H.G.
51.1 99.8 56.9 At3g13960 820609 AtGRF5 (GROWTH-REGULATING FACTOR 5) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower. O.I. C.G. H.G.
51.0 99.8 83.5 At3g12270 820407 PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3) F:methyltransferase activity, zinc ion binding;P:metabolic process;C:intracellular;MBOFPA O.I. C.G. H.G.
50.6 99.8 24.0 At4g25990 828705 CIL chloroplast import apparatus CIA2-like. CIA2 is a transcription factor which upregulates chloroplast translocon genes O.I. C.G. H.G.
50.5 99.8 159.8 At1g64970 842805 G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE) gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leaves O.I. C.G. H.G.
49.6 99.8 38.6 At4g37890 829945 EDA40 (embryo sac development arrest 40) F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:polar nucleus fusion;C:plasma membrane;PBOFM O.I. C.G. H.G.
48.7 99.8 77.5 At3g10530 820218 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;BMFOPA O.I. C.G. H.G.
46.2 99.8 42.2 At3g21540 821708 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:rRNA processing;C:nucleolus, heterotrimeric G-protein complex;MFOPBA O.I. C.G. H.G.
45.9 99.8 98.1 At5g14570 831308 ATNRT2.7 (Arabidopsis thaliana high affinity nitrate transporter 2.7) Encodes ATNRT2.7, a nitrate transporter that controls nitrate content in seeds. Expression is detected in reproductive organs and peaks in seeds. Localized to the vacuolar membrane. O.I. C.G. H.G.
45.9 99.8 21.4 At2g24560 816992 carboxylesterase/ hydrolase, acting on ester bonds F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
45.8 99.8 82.7 At2g19670 816486 PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A) F:protein-arginine N-methyltransferase activity;P:unknown;C:unknown;MBOPFA O.I. C.G. H.G.
45.8 99.8 67.7 At5g48240 834877 unknown protein F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOFPB O.I. C.G. H.G.
45.8 99.8 14.7 At3g24220 822008 NCED6 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6) A member of gene NCED-related gene family, encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition. O.I. C.G. H.G.
44.5 99.8 172.3 At5g02050 831729 mitochondrial glycoprotein family protein / MAM33 family protein F:unknown;P:biological_process unknown;C:chloroplast, mitochondrial matrix;PFOMB O.I. C.G. H.G.
44.5 99.8 28.7 At5g09970 830858 CYP78A7 member of CYP78A O.I. C.G. H.G.
44.3 99.8 171.8 At2g37640 818341 EXP3 member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
44.1 99.8 87.9 At2g47990 819411 SWA1 (SLOW WALKER1) Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant. O.I. C.G. H.G.
43.7 99.8 26.4 At5g16930 831556 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;OMBFPAV O.I. C.G. H.G.
43.3 99.8 46.0 At5g19300 832050 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBAV O.I. C.G. H.G.
41.6 99.8 128.0 At1g80270 844367 DNA-binding protein, putative F:DNA binding;P:biological_process unknown;C:chloroplast envelope;POMF O.I. C.G. H.G.
41.5 99.8 357.7 At5g03860 831690 MLS (MALATE SYNTHASE) Encodes a protein with malate synthase activity. O.I. C.G. H.G.
40.2 99.8 100.9 At1g48570 841278 zinc finger (Ran-binding) family protein F:binding, zinc ion binding;P:unknown;C:intracellular, chloroplast;MPOF O.I. C.G. H.G.
39.6 99.8 48.7 At5g06550 830543 - F:molecular_function unknown;P:cell surface receptor linked signal transduction;C:unknown;MBOFP O.I. C.G. H.G.
38.0 99.8 25.0 At2g40220 818614 ABI4 (ABA INSENSITIVE 4) encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings. O.I. C.G. H.G.
37.8 99.8 20.0 At2g01510 814680 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
36.9 99.7 109.8 At4g25340 828637 immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:nucleolus;MOBFPVA O.I. C.G. H.G.
36.8 99.7 66.3 At3g15460 820785 brix domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. C.G. H.G.
36.7 99.7 11.9 At1g05330 837032 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
34.8 99.7 68.2 At4g00600 825813 tetrahydrofolate dehydrogenase/cyclohydrolase, putative F:binding, catalytic activity;P:folic acid and derivative biosynthetic process, metabolic process;C:chloroplast;BOMFPA O.I. C.G. H.G.
34.3 99.7 139.5 At4g32720 829408 AtLa1 (Arabidopsis thaliana La protein 1) Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins. Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity. Has RNA binding activity. Required for normal ribosome biogenesis and embryogenesis. O.I. C.G. H.G.
34.2 99.7 29.8 At5g67520 836888 adenylylsulfate kinase, putative F:kinase activity, transferase activity, transferring phosphorus-containing groups, ATP binding;P:sulfate assimilation;C:chloroplast;BOMFPAV O.I. C.G. H.G.
34.1 99.7 96.7 At1g31660 840053 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB O.I. C.G. H.G.
34.0 99.7 90.9 At3g17465 821011 RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) encodes a putative L3 ribosomal protein targeted to the plastid. O.I. C.G. H.G.
33.8 99.7 84.6 At2g45730 819181 eukaryotic initiation factor 3 gamma subunit family protein F:translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:cellular_component unknown;MFOP O.I. C.G. H.G.
33.7 99.7 63.8 At3g55510 824716 RBL (REBELOTE) F:unknown;P:floral meristem determinacy;C:nucleus;MFOP O.I. C.G. H.G.
33.2 99.7 21.3 At5g53290 835410 CRF3 (CYTOKININ RESPONSE FACTOR 3) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
33.1 99.7 154.9 At3g23620 821942 brix domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MFOP O.I. C.G. H.G.
32.7 99.7 68.6 At4g25730 828678 FtsJ-like methyltransferase family protein F:methyltransferase activity;P:rRNA processing, rRNA methylation;C:nucleus;OMBFPVA O.I. C.G. H.G.
32.7 99.7 47.4 At1g03360 839521 ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4) F:RNA binding, exonuclease activity;P:unknown;C:mitochondrion;OMAFP O.I. C.G. H.G.
32.1 99.7 161.9 At3g18600 821391 DEAD/DEAH box helicase, putative F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:nucleolus;BOMFPAV O.I. C.G. H.G.
32.1 99.7 126.8 At5g52820 835359 WD-40 repeat family protein / notchless protein, putative F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;MFOPBAV O.I. C.G. H.G.
32.1 99.7 41.6 At4g04940 825833 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:rRNA processing;C:CUL4 RING ubiquitin ligase complex;MFBOPA O.I. C.G. H.G.
31.9 99.7 254.4 At2g30970 817648 ASP1 (ASPARTATE AMINOTRANSFERASE 1) ASPARTATE AMINOTRANSFERASE 1 O.I. C.G. H.G.
31.8 99.7 107.4 At3g57000 824867 nucleolar essential protein-related F:molecular_function unknown;P:unknown;C:nucleus;MOFAPBV O.I. C.G. H.G.
31.8 99.7 54.1 At3g14610 820689 CYP72A7 putative cytochrome P450 O.I. C.G. H.G.
31.8 99.7 31.6 At3g57940 824963 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFAPV O.I. C.G. H.G.
31.6 99.7 76.0 At5g64420 836563 DNA polymerase V family F:DNA-directed DNA polymerase activity, DNA binding;P:DNA replication, transcription;C:cellular_component unknown;MOFBPV O.I. C.G. H.G.
31.5 99.7 42.8 At3g59670 825136 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
31.3 99.7 121.6 At5g60960 836217 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFM O.I. C.G. H.G.
31.1 99.7 39.5 At2g20180 816538 PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5) Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark. It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls. Light reduces this activity in a phy-dependent manner. The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis. It also negatively regulates GA3 oxidase expression. O.I. C.G. H.G.
30.8 99.7 144.4 At4g20980 827845 eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative F:translation initiation factor activity;P:translational initiation;C:chloroplast;MOFP O.I. C.G. H.G.
30.7 99.7 102.9 At1g15440 838115 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPA O.I. C.G. H.G.
30.5 99.7 110.6 At4g01560 828136 MEE49 (maternal effect embryo arrest 49) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;FMOPA O.I. C.G. H.G.
30.5 99.7 97.6 At5g14050 831254 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;BMOFPAV O.I. C.G. H.G.
30.2 99.7 21.4 At4g36580 829810 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;OBMFPAV O.I. C.G. H.G.
30.0 99.7 39.5 At4g37090 829863 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA O.I. C.G. H.G.
29.9 99.7 87.9 At3g10690 820238 DNA gyrase subunit A family protein F:DNA topoisomerase activity, DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, catalytic activity, ATP binding;P:DNA topological change, DNA metabolic process;C:mitochondrion, chloroplast, nucleoid;OBMFVPA O.I. C.G. H.G.
29.9 99.7 72.4 At5g20600 832182 - F:molecular_function unknown;P:rRNA processing;C:preribosome, small subunit precursor;MFOPB O.I. C.G. H.G.
29.8 99.7 82.2 At3g22660 821837 rRNA processing protein-related F:unknown;P:unknown;C:cellular_component unknown;MOFBP O.I. C.G. H.G.
29.6 99.7 60.4 At2g24050 816939 MIF4G domain-containing protein / MA3 domain-containing protein F:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:unknown;MPOFBV O.I. C.G. H.G.
29.5 99.7 27.4 At3g49320 824094 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBOFP O.I. C.G. H.G.
29.4 99.7 178.8 At4g30810 829204 scpl29 (serine carboxypeptidase-like 29) F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB O.I. C.G. H.G.
29.3 99.7 93.5 At1g70980 843436 SYNC3 F:in 6 functions;P:asparaginyl-tRNA aminoacylation, aspartyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAP O.I. C.G. H.G.
28.7 99.7 36.0 At1g67120 843032 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor binding F:nucleoside-triphosphatase activity, ATPase activity, transcription factor binding, nucleotide binding, ATP binding;P:regulation of transcription, DNA-dependent, regulation of protein complex assembly;C:chloroplast envelope;OMBFPVA O.I. C.G. H.G.
28.6 99.7 42.0 At5g57390 835845 AIL5 (AINTEGUMENTA-LIKE 5) Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations. O.I. C.G. H.G.
28.4 99.7 149.7 At4g38130 829969 HD1 (HISTONE DEACETYLASE 1) Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation. O.I. C.G. H.G.
27.8 99.7 44.5 At1g10270 837566 GRP23 (GLUTAMINE-RICH PROTEIN23) F:binding;P:embryonic development, cell division;C:nucleus;PMOFBVA O.I. C.G. H.G.
27.0 99.7 71.8 At5g63810 836501 BGAL10 (beta-galactosidase 10) member of Glycoside Hydrolase Family 35 O.I. C.G. H.G.
27.0 99.7 63.9 At1g79470 844285 inosine-5'-monophosphate dehydrogenase F:IMP dehydrogenase activity, catalytic activity;P:GMP biosynthetic process, metabolic process;C:unknown;OBMFAPV O.I. C.G. H.G.
26.3 99.7 36.7 At1g75200 843857 flavodoxin family protein / radical SAM domain-containing protein F:in 6 functions;P:unknown;C:unknown;MBOFPA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
301.8	100.0	311.6	At1g43780	840974	scpl44 (serine carboxypeptidase-like 44)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
142.3	99.9	44.5	At4g11140	826715	CRF1 (CYTOKININ RESPONSE FACTOR 1)	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1).	O.I.	C.G.	H.G.
112.8	99.9	86.3	At3g12860	820468	nucleolar protein Nop56, putative	F:unknown;P:biological_process unknown;C:unknown;MOFPBAV	O.I.	C.G.	H.G.
108.6	99.9	28.1	At1g72570	843589	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBV	O.I.	C.G.	H.G.
104.1	99.9	85.6	At3g15720	820815	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane, plant-type cell wall;FPBOMAV	O.I.	C.G.	H.G.
99.6	99.9	366.2	At5g14450	831296	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOM	O.I.	C.G.	H.G.
96.6	99.9	168.0	At5g45650	834605	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM	O.I.	C.G.	H.G.
94.0	99.9	220.2	At1g04870	839393	PRMT10	Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.	O.I.	C.G.	H.G.
87.4	99.9	363.1	At5g05290	830411	ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
79.8	99.9	86.0	At4g24150	828515	AtGRF8 (GROWTH-REGULATING FACTOR 8)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.	O.I.	C.G.	H.G.
78.6	99.9	26.8	At5g17490	831615	RGL3 (RGA-LIKE PROTEIN 3)	DELLA subfamily member involved in GA signal transduction	O.I.	C.G.	H.G.
75.7	99.9	283.4	At1g26770	839218	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
75.3	99.9	308.5	At1g02640	837940	BXL2 (BETA-XYLOSIDASE 2)	encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.	O.I.	C.G.	H.G.
75.2	99.9	68.0	At2g40010	818589	60S acidic ribosomal protein P0 (RPP0A)	F:structural constituent of ribosome;P:translational elongation, translation, ribosome biogenesis;C:cytosolic ribosome, ribosome;MOAFPB	O.I.	C.G.	H.G.
71.9	99.9	102.7	At5g13870	831233	EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)	EXGT-A4, endoxyloglucan transferase,	O.I.	C.G.	H.G.
71.1	99.9	40.7	At1g02370	837735	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:unknown;C:unknown;POMFB	O.I.	C.G.	H.G.
71.0	99.9	96.7	At3g06530	819831	binding	F:binding;P:unknown;C:chloroplast, vacuole;MFOPB	O.I.	C.G.	H.G.
70.3	99.9	54.6	At4g19240	827664	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
69.0	99.9	296.2	At1g75830	843916	LCR67	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
66.0	99.8	54.3	At4g23750	828475	CRF2 (CYTOKININ RESPONSE FACTOR 2)	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
62.3	99.8	23.9	At3g12770	820459	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
60.9	99.8	150.9	At4g29510	829072	PRMT11 (ARGININE METHYLTRANSFERASE 11)	Has arginine N-methyltransferase activity. Modifies AtMBD7.	O.I.	C.G.	H.G.
60.1	99.8	358.0	At4g36880	829841	CP1 (CYSTEINE PROTEINASE1)	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
59.9	99.8	99.5	At4g05410	825889	transducin family protein / WD-40 repeat family protein	F:nucleotide binding, nucleic acid binding;P:mitochondrial fission;C:nucleolus, small nucleolar ribonucleoprotein complex, anaphase-promoting complex, CUL4 RING ubiquitin ligase complex;MFOBPVA	O.I.	C.G.	H.G.
56.0	99.8	67.7	At4g02400	828039	-	F:molecular_function unknown;P:rRNA processing;C:small-subunit processome;MOFBPVA	O.I.	C.G.	H.G.
56.0	99.8	65.3	At5g54300	835518	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBA	O.I.	C.G.	H.G.
55.6	99.8	190.8	At1g29980	839877	-	F:unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;PB	O.I.	C.G.	H.G.
55.6	99.8	53.3	At1g16280	838197	DEAD/DEAH box helicase, putative	F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
53.5	99.8	276.8	At5g08260	830722	scpl35 (serine carboxypeptidase-like 35)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
52.2	99.8	72.1	At2g19385	816457	zinc ion binding	F:zinc ion binding;P:biological_process unknown;C:intracellular;MOFPB	O.I.	C.G.	H.G.
51.5	99.8	223.4	At1g52930	841726	brix domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
51.1	99.8	56.9	At3g13960	820609	AtGRF5 (GROWTH-REGULATING FACTOR 5)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower.	O.I.	C.G.	H.G.
51.0	99.8	83.5	At3g12270	820407	PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3)	F:methyltransferase activity, zinc ion binding;P:metabolic process;C:intracellular;MBOFPA	O.I.	C.G.	H.G.
50.6	99.8	24.0	At4g25990	828705	CIL	chloroplast import apparatus CIA2-like. CIA2 is a transcription factor which upregulates chloroplast translocon genes	O.I.	C.G.	H.G.
50.5	99.8	159.8	At1g64970	842805	G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)	gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leaves	O.I.	C.G.	H.G.
49.6	99.8	38.6	At4g37890	829945	EDA40 (embryo sac development arrest 40)	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:polar nucleus fusion;C:plasma membrane;PBOFM	O.I.	C.G.	H.G.
48.7	99.8	77.5	At3g10530	820218	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;BMFOPA	O.I.	C.G.	H.G.
46.2	99.8	42.2	At3g21540	821708	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:rRNA processing;C:nucleolus, heterotrimeric G-protein complex;MFOPBA	O.I.	C.G.	H.G.
45.9	99.8	98.1	At5g14570	831308	ATNRT2.7 (Arabidopsis thaliana high affinity nitrate transporter 2.7)	Encodes ATNRT2.7, a nitrate transporter that controls nitrate content in seeds. Expression is detected in reproductive organs and peaks in seeds. Localized to the vacuolar membrane.	O.I.	C.G.	H.G.
45.9	99.8	21.4	At2g24560	816992	carboxylesterase/ hydrolase, acting on ester bonds	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
45.8	99.8	82.7	At2g19670	816486	PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A)	F:protein-arginine N-methyltransferase activity;P:unknown;C:unknown;MBOPFA	O.I.	C.G.	H.G.
45.8	99.8	67.7	At5g48240	834877	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOFPB	O.I.	C.G.	H.G.
45.8	99.8	14.7	At3g24220	822008	NCED6 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6)	A member of gene NCED-related gene family, encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition.	O.I.	C.G.	H.G.
44.5	99.8	172.3	At5g02050	831729	mitochondrial glycoprotein family protein / MAM33 family protein	F:unknown;P:biological_process unknown;C:chloroplast, mitochondrial matrix;PFOMB	O.I.	C.G.	H.G.
44.5	99.8	28.7	At5g09970	830858	CYP78A7	member of CYP78A	O.I.	C.G.	H.G.
44.3	99.8	171.8	At2g37640	818341	EXP3	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
44.1	99.8	87.9	At2g47990	819411	SWA1 (SLOW WALKER1)	Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant.	O.I.	C.G.	H.G.
43.7	99.8	26.4	At5g16930	831556	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;OMBFPAV	O.I.	C.G.	H.G.
43.3	99.8	46.0	At5g19300	832050	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBAV	O.I.	C.G.	H.G.
41.6	99.8	128.0	At1g80270	844367	DNA-binding protein, putative	F:DNA binding;P:biological_process unknown;C:chloroplast envelope;POMF	O.I.	C.G.	H.G.
41.5	99.8	357.7	At5g03860	831690	MLS (MALATE SYNTHASE)	Encodes a protein with malate synthase activity.	O.I.	C.G.	H.G.
40.2	99.8	100.9	At1g48570	841278	zinc finger (Ran-binding) family protein	F:binding, zinc ion binding;P:unknown;C:intracellular, chloroplast;MPOF	O.I.	C.G.	H.G.
39.6	99.8	48.7	At5g06550	830543	-	F:molecular_function unknown;P:cell surface receptor linked signal transduction;C:unknown;MBOFP	O.I.	C.G.	H.G.
38.0	99.8	25.0	At2g40220	818614	ABI4 (ABA INSENSITIVE 4)	encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings.	O.I.	C.G.	H.G.
37.8	99.8	20.0	At2g01510	814680	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
36.9	99.7	109.8	At4g25340	828637	immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:nucleolus;MOBFPVA	O.I.	C.G.	H.G.
36.8	99.7	66.3	At3g15460	820785	brix domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
36.7	99.7	11.9	At1g05330	837032	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
34.8	99.7	68.2	At4g00600	825813	tetrahydrofolate dehydrogenase/cyclohydrolase, putative	F:binding, catalytic activity;P:folic acid and derivative biosynthetic process, metabolic process;C:chloroplast;BOMFPA	O.I.	C.G.	H.G.
34.3	99.7	139.5	At4g32720	829408	AtLa1 (Arabidopsis thaliana La protein 1)	Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins. Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity. Has RNA binding activity. Required for normal ribosome biogenesis and embryogenesis.	O.I.	C.G.	H.G.
34.2	99.7	29.8	At5g67520	836888	adenylylsulfate kinase, putative	F:kinase activity, transferase activity, transferring phosphorus-containing groups, ATP binding;P:sulfate assimilation;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
34.1	99.7	96.7	At1g31660	840053	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB	O.I.	C.G.	H.G.
34.0	99.7	90.9	At3g17465	821011	RPL3P (RIBOSOMAL PROTEIN L3 PLASTID)	encodes a putative L3 ribosomal protein targeted to the plastid.	O.I.	C.G.	H.G.
33.8	99.7	84.6	At2g45730	819181	eukaryotic initiation factor 3 gamma subunit family protein	F:translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
33.7	99.7	63.8	At3g55510	824716	RBL (REBELOTE)	F:unknown;P:floral meristem determinacy;C:nucleus;MFOP	O.I.	C.G.	H.G.
33.2	99.7	21.3	At5g53290	835410	CRF3 (CYTOKININ RESPONSE FACTOR 3)	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
33.1	99.7	154.9	At3g23620	821942	brix domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MFOP	O.I.	C.G.	H.G.
32.7	99.7	68.6	At4g25730	828678	FtsJ-like methyltransferase family protein	F:methyltransferase activity;P:rRNA processing, rRNA methylation;C:nucleus;OMBFPVA	O.I.	C.G.	H.G.
32.7	99.7	47.4	At1g03360	839521	ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4)	F:RNA binding, exonuclease activity;P:unknown;C:mitochondrion;OMAFP	O.I.	C.G.	H.G.
32.1	99.7	161.9	At3g18600	821391	DEAD/DEAH box helicase, putative	F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:nucleolus;BOMFPAV	O.I.	C.G.	H.G.
32.1	99.7	126.8	At5g52820	835359	WD-40 repeat family protein / notchless protein, putative	F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;MFOPBAV	O.I.	C.G.	H.G.
32.1	99.7	41.6	At4g04940	825833	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:rRNA processing;C:CUL4 RING ubiquitin ligase complex;MFBOPA	O.I.	C.G.	H.G.
31.9	99.7	254.4	At2g30970	817648	ASP1 (ASPARTATE AMINOTRANSFERASE 1)	ASPARTATE AMINOTRANSFERASE 1	O.I.	C.G.	H.G.
31.8	99.7	107.4	At3g57000	824867	nucleolar essential protein-related	F:molecular_function unknown;P:unknown;C:nucleus;MOFAPBV	O.I.	C.G.	H.G.
31.8	99.7	54.1	At3g14610	820689	CYP72A7	putative cytochrome P450	O.I.	C.G.	H.G.
31.8	99.7	31.6	At3g57940	824963	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFAPV	O.I.	C.G.	H.G.
31.6	99.7	76.0	At5g64420	836563	DNA polymerase V family	F:DNA-directed DNA polymerase activity, DNA binding;P:DNA replication, transcription;C:cellular_component unknown;MOFBPV	O.I.	C.G.	H.G.
31.5	99.7	42.8	At3g59670	825136	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
31.3	99.7	121.6	At5g60960	836217	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFM	O.I.	C.G.	H.G.
31.1	99.7	39.5	At2g20180	816538	PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5)	Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark. It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls. Light reduces this activity in a phy-dependent manner. The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis. It also negatively regulates GA3 oxidase expression.	O.I.	C.G.	H.G.
30.8	99.7	144.4	At4g20980	827845	eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative	F:translation initiation factor activity;P:translational initiation;C:chloroplast;MOFP	O.I.	C.G.	H.G.
30.7	99.7	102.9	At1g15440	838115	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPA	O.I.	C.G.	H.G.
30.5	99.7	110.6	At4g01560	828136	MEE49 (maternal effect embryo arrest 49)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;FMOPA	O.I.	C.G.	H.G.
30.5	99.7	97.6	At5g14050	831254	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;BMOFPAV	O.I.	C.G.	H.G.
30.2	99.7	21.4	At4g36580	829810	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;OBMFPAV	O.I.	C.G.	H.G.
30.0	99.7	39.5	At4g37090	829863	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA	O.I.	C.G.	H.G.
29.9	99.7	87.9	At3g10690	820238	DNA gyrase subunit A family protein	F:DNA topoisomerase activity, DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, catalytic activity, ATP binding;P:DNA topological change, DNA metabolic process;C:mitochondrion, chloroplast, nucleoid;OBMFVPA	O.I.	C.G.	H.G.
29.9	99.7	72.4	At5g20600	832182	-	F:molecular_function unknown;P:rRNA processing;C:preribosome, small subunit precursor;MFOPB	O.I.	C.G.	H.G.
29.8	99.7	82.2	At3g22660	821837	rRNA processing protein-related	F:unknown;P:unknown;C:cellular_component unknown;MOFBP	O.I.	C.G.	H.G.
29.6	99.7	60.4	At2g24050	816939	MIF4G domain-containing protein / MA3 domain-containing protein	F:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:unknown;MPOFBV	O.I.	C.G.	H.G.
29.5	99.7	27.4	At3g49320	824094	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBOFP	O.I.	C.G.	H.G.
29.4	99.7	178.8	At4g30810	829204	scpl29 (serine carboxypeptidase-like 29)	F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB	O.I.	C.G.	H.G.
29.3	99.7	93.5	At1g70980	843436	SYNC3	F:in 6 functions;P:asparaginyl-tRNA aminoacylation, aspartyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAP	O.I.	C.G.	H.G.
28.7	99.7	36.0	At1g67120	843032	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor binding	F:nucleoside-triphosphatase activity, ATPase activity, transcription factor binding, nucleotide binding, ATP binding;P:regulation of transcription, DNA-dependent, regulation of protein complex assembly;C:chloroplast envelope;OMBFPVA	O.I.	C.G.	H.G.
28.6	99.7	42.0	At5g57390	835845	AIL5 (AINTEGUMENTA-LIKE 5)	Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations.	O.I.	C.G.	H.G.
28.4	99.7	149.7	At4g38130	829969	HD1 (HISTONE DEACETYLASE 1)	Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.	O.I.	C.G.	H.G.
27.8	99.7	44.5	At1g10270	837566	GRP23 (GLUTAMINE-RICH PROTEIN23)	F:binding;P:embryonic development, cell division;C:nucleus;PMOFBVA	O.I.	C.G.	H.G.
27.0	99.7	71.8	At5g63810	836501	BGAL10 (beta-galactosidase 10)	member of Glycoside Hydrolase Family 35	O.I.	C.G.	H.G.
27.0	99.7	63.9	At1g79470	844285	inosine-5'-monophosphate dehydrogenase	F:IMP dehydrogenase activity, catalytic activity;P:GMP biosynthetic process, metabolic process;C:unknown;OBMFAPV	O.I.	C.G.	H.G.
26.3	99.7	36.7	At1g75200	843857	flavodoxin family protein / radical SAM domain-containing protein	F:in 6 functions;P:unknown;C:unknown;MBOFPA	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-MEXP-849-raw-cel-1181981046
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-849-raw-cel-1181981046 GSE experiment -

GSM ID -

Assay name E-MEXP-849-raw-cel-1181981046

GSE experiment -