CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-849-raw-cel-1181981030

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
321.6 100.0 321.6 At1g43780 840974 scpl44 (serine carboxypeptidase-like 44) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO O.I. C.G. H.G.
240.5 100.0 57.9 At4g11140 826715 CRF1 (CYTOKININ RESPONSE FACTOR 1) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1). O.I. C.G. H.G.
212.2 100.0 118.4 At3g12860 820468 nucleolar protein Nop56, putative F:unknown;P:biological_process unknown;C:unknown;MOFPBAV O.I. C.G. H.G.
129.1 99.9 405.2 At1g75830 843916 LCR67 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
103.7 99.9 43.8 At5g09970 830858 CYP78A7 member of CYP78A O.I. C.G. H.G.
85.8 99.9 44.7 At1g02370 837735 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:unknown;POMFB O.I. C.G. H.G.
85.7 99.9 73.8 At3g13960 820609 AtGRF5 (GROWTH-REGULATING FACTOR 5) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower. O.I. C.G. H.G.
85.1 99.9 138.8 At3g22660 821837 rRNA processing protein-related F:unknown;P:unknown;C:cellular_component unknown;MOFBP O.I. C.G. H.G.
84.4 99.9 91.9 At5g48240 834877 unknown protein F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOFPB O.I. C.G. H.G.
78.7 99.9 19.2 At3g24220 822008 NCED6 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6) A member of gene NCED-related gene family, encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition. O.I. C.G. H.G.
77.5 99.9 323.0 At5g14450 831296 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOM O.I. C.G. H.G.
76.4 99.9 34.9 At5g16930 831556 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;OMBFPAV O.I. C.G. H.G.
75.9 99.9 283.9 At1g26770 839218 ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
75.0 99.9 26.2 At3g12770 820459 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
70.5 99.9 103.3 At1g79470 844285 inosine-5'-monophosphate dehydrogenase F:IMP dehydrogenase activity, catalytic activity;P:GMP biosynthetic process, metabolic process;C:unknown;OBMFAPV O.I. C.G. H.G.
69.4 99.9 69.9 At3g15720 820815 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane, plant-type cell wall;FPBOMAV O.I. C.G. H.G.
67.6 99.9 24.9 At5g17490 831615 RGL3 (RGA-LIKE PROTEIN 3) DELLA subfamily member involved in GA signal transduction O.I. C.G. H.G.
67.2 99.8 95.9 At3g12270 820407 PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3) F:methyltransferase activity, zinc ion binding;P:metabolic process;C:intracellular;MBOFPA O.I. C.G. H.G.
65.9 99.8 81.1 At2g19385 816457 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:intracellular;MOFPB O.I. C.G. H.G.
65.3 99.8 77.8 At4g24150 828515 AtGRF8 (GROWTH-REGULATING FACTOR 8) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower. O.I. C.G. H.G.
64.5 99.8 182.4 At1g04870 839393 PRMT10 Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts. O.I. C.G. H.G.
62.5 99.8 21.3 At1g72570 843589 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBV O.I. C.G. H.G.
60.9 99.8 70.5 At4g02400 828039 - F:molecular_function unknown;P:rRNA processing;C:small-subunit processome;MOFBPVA O.I. C.G. H.G.
58.7 99.8 148.2 At4g29510 829072 PRMT11 (ARGININE METHYLTRANSFERASE 11) Has arginine N-methyltransferase activity. Modifies AtMBD7. O.I. C.G. H.G.
57.9 99.8 580.1 At4g28520 828970 CRU3 (CRUCIFERIN 3) Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. O.I. C.G. H.G.
56.6 99.8 292.1 At5g05290 830411 ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
56.5 99.8 83.5 At3g10530 820218 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;BMFOPA O.I. C.G. H.G.
56.3 99.8 31.1 At2g29090 817457 CYP707A2 Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition. O.I. C.G. H.G.
54.4 99.8 64.4 At5g54300 835518 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBA O.I. C.G. H.G.
54.2 99.8 28.7 At4g36580 829810 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;OBMFPAV O.I. C.G. H.G.
53.3 99.8 45.4 At3g21540 821708 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:rRNA processing;C:nucleolus, heterotrimeric G-protein complex;MFOPBA O.I. C.G. H.G.
51.9 99.8 39.4 At4g37890 829945 EDA40 (embryo sac development arrest 40) F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:polar nucleus fusion;C:plasma membrane;PBOFM O.I. C.G. H.G.
51.3 99.8 56.2 At5g57390 835845 AIL5 (AINTEGUMENTA-LIKE 5) Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations. O.I. C.G. H.G.
50.7 99.8 87.0 At2g19670 816486 PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A) F:protein-arginine N-methyltransferase activity;P:unknown;C:unknown;MBOPFA O.I. C.G. H.G.
49.6 99.8 28.6 At2g40220 818614 ABI4 (ABA INSENSITIVE 4) encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings. O.I. C.G. H.G.
49.1 99.8 179.4 At1g29980 839877 - F:unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;PB O.I. C.G. H.G.
48.8 99.8 46.1 At5g13680 831213 ABO1 (ABA-OVERLY SENSITIVE 1) A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1�ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate. O.I. C.G. H.G.
48.1 99.8 300.8 At1g56110 842063 NOP56 (Arabidopsis homolog of nucleolar protein Nop56) NOP56-like protein O.I. C.G. H.G.
47.9 99.8 353.4 At1g04560 839491 AWPM-19-like membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
46.8 99.8 153.3 At2g41280 818727 M10 Encodes a hydrophilic protein similar to Late Embryogenesis Activated (LEA) proteins expressed during embryogenesis, which are thought to be involved in the acquisition of dessication tolerance. O.I. C.G. H.G.
46.0 99.8 77.8 At3g06530 819831 binding F:binding;P:unknown;C:chloroplast, vacuole;MFOPB O.I. C.G. H.G.
45.6 99.8 97.8 At5g14570 831308 ATNRT2.7 (Arabidopsis thaliana high affinity nitrate transporter 2.7) Encodes ATNRT2.7, a nitrate transporter that controls nitrate content in seeds. Expression is detected in reproductive organs and peaks in seeds. Localized to the vacuolar membrane. O.I. C.G. H.G.
45.6 99.8 51.5 At3g59670 825136 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
45.5 99.8 160.5 At4g32720 829408 AtLa1 (Arabidopsis thaliana La protein 1) Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins. Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity. Has RNA binding activity. Required for normal ribosome biogenesis and embryogenesis. O.I. C.G. H.G.
45.5 99.8 89.3 At2g47990 819411 SWA1 (SLOW WALKER1) Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant. O.I. C.G. H.G.
45.3 99.8 73.6 At3g15460 820785 brix domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. C.G. H.G.
44.7 99.8 308.9 At4g36880 829841 CP1 (CYSTEINE PROTEINASE1) F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
44.6 99.8 207.8 At1g52930 841726 brix domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;MFOP O.I. C.G. H.G.
44.0 99.8 87.8 At5g20600 832182 - F:molecular_function unknown;P:rRNA processing;C:preribosome, small subunit precursor;MFOPB O.I. C.G. H.G.
42.9 99.8 124.7 At3g57000 824867 nucleolar essential protein-related F:molecular_function unknown;P:unknown;C:nucleus;MOFAPBV O.I. C.G. H.G.
42.5 99.8 43.6 At4g23750 828475 CRF2 (CYTOKININ RESPONSE FACTOR 2) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
41.4 99.8 54.3 At1g10270 837566 GRP23 (GLUTAMINE-RICH PROTEIN23) F:binding;P:embryonic development, cell division;C:nucleus;PMOFBVA O.I. C.G. H.G.
40.9 99.8 430.3 At1g52690 841701 late embryogenesis abundant protein, putative / LEA protein, putative F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PBMOFVA O.I. C.G. H.G.
40.4 99.8 76.2 At4g25730 828678 FtsJ-like methyltransferase family protein F:methyltransferase activity;P:rRNA processing, rRNA methylation;C:nucleus;OMBFPVA O.I. C.G. H.G.
39.7 99.8 349.8 At5g03860 831690 MLS (MALATE SYNTHASE) Encodes a protein with malate synthase activity. O.I. C.G. H.G.
39.7 99.8 51.1 At1g13160 837874 SDA1 family protein F:binding;P:biological_process unknown;C:cellular_component unknown;BMOFPVA O.I. C.G. H.G.
37.8 99.8 309.6 At4g27160 828824 AT2S3 F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO O.I. C.G. H.G.
37.7 99.7 51.5 At1g32860 840180 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;POF O.I. C.G. H.G.
37.5 99.7 33.7 At4g24660 828568 ATHB22 (HOMEOBOX PROTEIN 22) F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy;C:nucleus;PM O.I. C.G. H.G.
37.1 99.7 164.0 At3g23620 821942 brix domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MFOP O.I. C.G. H.G.
37.1 99.7 8.9 At2g27610 817307 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBA O.I. C.G. H.G.
36.7 99.7 229.1 At5g08260 830722 scpl35 (serine carboxypeptidase-like 35) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
36.7 99.7 91.1 At5g62440 836365 - Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. O.I. C.G. H.G.
36.3 99.7 25.9 At3g02990 821162 ATHSFA1E member of Heat Stress Transcription Factor (Hsf) family O.I. C.G. H.G.
35.5 99.7 42.6 At1g16280 838197 DEAD/DEAH box helicase, putative F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
35.1 99.7 36.8 At2g38340 818414 AP2 domain-containing transcription factor, putative (DRE2B) encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. O.I. C.G. H.G.
35.1 99.7 21.9 At5g53290 835410 CRF3 (CYTOKININ RESPONSE FACTOR 3) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
34.7 99.7 25.7 At4g39500 830104 CYP96A11 member of CYP96A O.I. C.G. H.G.
34.1 99.7 117.8 At3g55010 824667 PUR5 encoding phosphoribosylformylglycinamidine cyclo-ligase (syn. AIR synthetase)that phosphorylates 5-phosphoribosyl-N-formylglycinamidine (FGAM) to form 5-aminoimidazole ribonucleotide (AIR) O.I. C.G. H.G.
34.0 99.7 99.7 At5g45650 834605 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM O.I. C.G. H.G.
33.9 99.7 48.2 At1g03360 839521 ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4) F:RNA binding, exonuclease activity;P:unknown;C:mitochondrion;OMAFP O.I. C.G. H.G.
33.9 99.7 32.6 At3g57940 824963 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFAPV O.I. C.G. H.G.
33.4 99.7 19.5 At4g25990 828705 CIL chloroplast import apparatus CIA2-like. CIA2 is a transcription factor which upregulates chloroplast translocon genes O.I. C.G. H.G.
33.2 99.7 129.5 At1g64970 842805 G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE) gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leaves O.I. C.G. H.G.
33.0 99.7 86.9 At2g16570 816156 ATASE1 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1) Amidophosphoribosyltransferase (ATase: EC 2.4.2.14) is a key enzyme in the pathway of purine nucleotide biosynthesis O.I. C.G. H.G.
32.9 99.7 128.4 At5g52820 835359 WD-40 repeat family protein / notchless protein, putative F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;MFOPBAV O.I. C.G. H.G.
32.5 99.7 202.7 At1g02640 837940 BXL2 (BETA-XYLOSIDASE 2) encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members. O.I. C.G. H.G.
32.5 99.7 109.7 At5g55920 835690 nucleolar protein, putative F:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVA O.I. C.G. H.G.
32.3 99.7 62.4 At3g55510 824716 RBL (REBELOTE) F:unknown;P:floral meristem determinacy;C:nucleus;MFOP O.I. C.G. H.G.
32.3 99.7 54.7 At5g61770 836299 PPAN (PETER PAN-LIKE PROTEIN) F:unknown;P:unknown;C:cellular_component unknown;MOFPVB O.I. C.G. H.G.
31.9 99.7 113.1 At4g01560 828136 MEE49 (maternal effect embryo arrest 49) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;FMOPA O.I. C.G. H.G.
31.8 99.7 132.2 At3g62940 825469 OTU-like cysteine protease family protein F:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
31.8 99.7 40.7 At4g37090 829863 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA O.I. C.G. H.G.
31.6 99.7 238.8 At2g27380 817282 ATEPR1 Encodes an extensin like gene involved in seed germination. O.I. C.G. H.G.
31.0 99.7 28.4 At5g67520 836888 adenylylsulfate kinase, putative F:kinase activity, transferase activity, transferring phosphorus-containing groups, ATP binding;P:sulfate assimilation;C:chloroplast;BOMFPAV O.I. C.G. H.G.
30.5 99.7 319.1 At3g57150 824882 NAP57 (Arabidopsis thaliana homologue of NAP57) Encodes a putative pseudouridine synthase (NAP57). O.I. C.G. H.G.
30.4 99.7 70.0 At3g11964 820370 RNA binding F:RNA binding;P:mRNA processing, RNA processing;C:nucleolus, plasma membrane;BOMFPA O.I. C.G. H.G.
30.2 99.7 85.6 At3g17465 821011 RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) encodes a putative L3 ribosomal protein targeted to the plastid. O.I. C.G. H.G.
29.9 99.7 153.6 At4g38130 829969 HD1 (HISTONE DEACETYLASE 1) Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation. O.I. C.G. H.G.
29.9 99.7 46.9 At5g59240 836042 40S ribosomal protein S8 (RPS8B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane;MAOFP O.I. C.G. H.G.
29.8 99.7 36.6 At5g26860 832744 LON1 (LON PROTEASE 1) Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790). Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells. Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins. O.I. C.G. H.G.
29.7 99.7 44.5 At3g15180 820749 proteasome-related F:binding;P:biological_process unknown;C:plasma membrane;MPOB O.I. C.G. H.G.
29.6 99.7 65.9 At5g13870 831233 EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4) EXGT-A4, endoxyloglucan transferase, O.I. C.G. H.G.
29.5 99.7 31.1 At1g20300 838618 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:unknown;POMFBA O.I. C.G. H.G.
29.4 99.7 97.9 At4g25340 828637 immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:nucleolus;MOBFPVA O.I. C.G. H.G.
28.7 99.7 288.4 At5g67360 836871 ARA12 Encodes a subtilisin-like serine protease essential for mucilage release from seed coats. O.I. C.G. H.G.
28.7 99.7 21.5 At4g01990 828172 pentatricopeptide (PPR) repeat-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;POFMB O.I. C.G. H.G.
28.4 99.7 95.4 At3g19920 821530 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
27.9 99.7 70.8 At1g18850 838466 unknown protein F:molecular_function unknown;P:biological_process unknown;C:nucleolus;P O.I. C.G. H.G.
27.9 99.7 38.8 At4g04940 825833 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:rRNA processing;C:CUL4 RING ubiquitin ligase complex;MFBOPA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
321.6	100.0	321.6	At1g43780	840974	scpl44 (serine carboxypeptidase-like 44)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
240.5	100.0	57.9	At4g11140	826715	CRF1 (CYTOKININ RESPONSE FACTOR 1)	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1).	O.I.	C.G.	H.G.
212.2	100.0	118.4	At3g12860	820468	nucleolar protein Nop56, putative	F:unknown;P:biological_process unknown;C:unknown;MOFPBAV	O.I.	C.G.	H.G.
129.1	99.9	405.2	At1g75830	843916	LCR67	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
103.7	99.9	43.8	At5g09970	830858	CYP78A7	member of CYP78A	O.I.	C.G.	H.G.
85.8	99.9	44.7	At1g02370	837735	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:unknown;C:unknown;POMFB	O.I.	C.G.	H.G.
85.7	99.9	73.8	At3g13960	820609	AtGRF5 (GROWTH-REGULATING FACTOR 5)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower.	O.I.	C.G.	H.G.
85.1	99.9	138.8	At3g22660	821837	rRNA processing protein-related	F:unknown;P:unknown;C:cellular_component unknown;MOFBP	O.I.	C.G.	H.G.
84.4	99.9	91.9	At5g48240	834877	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOFPB	O.I.	C.G.	H.G.
78.7	99.9	19.2	At3g24220	822008	NCED6 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6)	A member of gene NCED-related gene family, encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition.	O.I.	C.G.	H.G.
77.5	99.9	323.0	At5g14450	831296	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOM	O.I.	C.G.	H.G.
76.4	99.9	34.9	At5g16930	831556	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;OMBFPAV	O.I.	C.G.	H.G.
75.9	99.9	283.9	At1g26770	839218	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
75.0	99.9	26.2	At3g12770	820459	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
70.5	99.9	103.3	At1g79470	844285	inosine-5'-monophosphate dehydrogenase	F:IMP dehydrogenase activity, catalytic activity;P:GMP biosynthetic process, metabolic process;C:unknown;OBMFAPV	O.I.	C.G.	H.G.
69.4	99.9	69.9	At3g15720	820815	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane, plant-type cell wall;FPBOMAV	O.I.	C.G.	H.G.
67.6	99.9	24.9	At5g17490	831615	RGL3 (RGA-LIKE PROTEIN 3)	DELLA subfamily member involved in GA signal transduction	O.I.	C.G.	H.G.
67.2	99.8	95.9	At3g12270	820407	PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3)	F:methyltransferase activity, zinc ion binding;P:metabolic process;C:intracellular;MBOFPA	O.I.	C.G.	H.G.
65.9	99.8	81.1	At2g19385	816457	zinc ion binding	F:zinc ion binding;P:biological_process unknown;C:intracellular;MOFPB	O.I.	C.G.	H.G.
65.3	99.8	77.8	At4g24150	828515	AtGRF8 (GROWTH-REGULATING FACTOR 8)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.	O.I.	C.G.	H.G.
64.5	99.8	182.4	At1g04870	839393	PRMT10	Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.	O.I.	C.G.	H.G.
62.5	99.8	21.3	At1g72570	843589	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBV	O.I.	C.G.	H.G.
60.9	99.8	70.5	At4g02400	828039	-	F:molecular_function unknown;P:rRNA processing;C:small-subunit processome;MOFBPVA	O.I.	C.G.	H.G.
58.7	99.8	148.2	At4g29510	829072	PRMT11 (ARGININE METHYLTRANSFERASE 11)	Has arginine N-methyltransferase activity. Modifies AtMBD7.	O.I.	C.G.	H.G.
57.9	99.8	580.1	At4g28520	828970	CRU3 (CRUCIFERIN 3)	Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	O.I.	C.G.	H.G.
56.6	99.8	292.1	At5g05290	830411	ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
56.5	99.8	83.5	At3g10530	820218	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;BMFOPA	O.I.	C.G.	H.G.
56.3	99.8	31.1	At2g29090	817457	CYP707A2	Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition.	O.I.	C.G.	H.G.
54.4	99.8	64.4	At5g54300	835518	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBA	O.I.	C.G.	H.G.
54.2	99.8	28.7	At4g36580	829810	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;OBMFPAV	O.I.	C.G.	H.G.
53.3	99.8	45.4	At3g21540	821708	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:rRNA processing;C:nucleolus, heterotrimeric G-protein complex;MFOPBA	O.I.	C.G.	H.G.
51.9	99.8	39.4	At4g37890	829945	EDA40 (embryo sac development arrest 40)	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:polar nucleus fusion;C:plasma membrane;PBOFM	O.I.	C.G.	H.G.
51.3	99.8	56.2	At5g57390	835845	AIL5 (AINTEGUMENTA-LIKE 5)	Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations.	O.I.	C.G.	H.G.
50.7	99.8	87.0	At2g19670	816486	PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A)	F:protein-arginine N-methyltransferase activity;P:unknown;C:unknown;MBOPFA	O.I.	C.G.	H.G.
49.6	99.8	28.6	At2g40220	818614	ABI4 (ABA INSENSITIVE 4)	encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings.	O.I.	C.G.	H.G.
49.1	99.8	179.4	At1g29980	839877	-	F:unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;PB	O.I.	C.G.	H.G.
48.8	99.8	46.1	At5g13680	831213	ABO1 (ABA-OVERLY SENSITIVE 1)	A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1�ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate.	O.I.	C.G.	H.G.
48.1	99.8	300.8	At1g56110	842063	NOP56 (Arabidopsis homolog of nucleolar protein Nop56)	NOP56-like protein	O.I.	C.G.	H.G.
47.9	99.8	353.4	At1g04560	839491	AWPM-19-like membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
46.8	99.8	153.3	At2g41280	818727	M10	Encodes a hydrophilic protein similar to Late Embryogenesis Activated (LEA) proteins expressed during embryogenesis, which are thought to be involved in the acquisition of dessication tolerance.	O.I.	C.G.	H.G.
46.0	99.8	77.8	At3g06530	819831	binding	F:binding;P:unknown;C:chloroplast, vacuole;MFOPB	O.I.	C.G.	H.G.
45.6	99.8	97.8	At5g14570	831308	ATNRT2.7 (Arabidopsis thaliana high affinity nitrate transporter 2.7)	Encodes ATNRT2.7, a nitrate transporter that controls nitrate content in seeds. Expression is detected in reproductive organs and peaks in seeds. Localized to the vacuolar membrane.	O.I.	C.G.	H.G.
45.6	99.8	51.5	At3g59670	825136	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
45.5	99.8	160.5	At4g32720	829408	AtLa1 (Arabidopsis thaliana La protein 1)	Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins. Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity. Has RNA binding activity. Required for normal ribosome biogenesis and embryogenesis.	O.I.	C.G.	H.G.
45.5	99.8	89.3	At2g47990	819411	SWA1 (SLOW WALKER1)	Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant.	O.I.	C.G.	H.G.
45.3	99.8	73.6	At3g15460	820785	brix domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
44.7	99.8	308.9	At4g36880	829841	CP1 (CYSTEINE PROTEINASE1)	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
44.6	99.8	207.8	At1g52930	841726	brix domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
44.0	99.8	87.8	At5g20600	832182	-	F:molecular_function unknown;P:rRNA processing;C:preribosome, small subunit precursor;MFOPB	O.I.	C.G.	H.G.
42.9	99.8	124.7	At3g57000	824867	nucleolar essential protein-related	F:molecular_function unknown;P:unknown;C:nucleus;MOFAPBV	O.I.	C.G.	H.G.
42.5	99.8	43.6	At4g23750	828475	CRF2 (CYTOKININ RESPONSE FACTOR 2)	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
41.4	99.8	54.3	At1g10270	837566	GRP23 (GLUTAMINE-RICH PROTEIN23)	F:binding;P:embryonic development, cell division;C:nucleus;PMOFBVA	O.I.	C.G.	H.G.
40.9	99.8	430.3	At1g52690	841701	late embryogenesis abundant protein, putative / LEA protein, putative	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PBMOFVA	O.I.	C.G.	H.G.
40.4	99.8	76.2	At4g25730	828678	FtsJ-like methyltransferase family protein	F:methyltransferase activity;P:rRNA processing, rRNA methylation;C:nucleus;OMBFPVA	O.I.	C.G.	H.G.
39.7	99.8	349.8	At5g03860	831690	MLS (MALATE SYNTHASE)	Encodes a protein with malate synthase activity.	O.I.	C.G.	H.G.
39.7	99.8	51.1	At1g13160	837874	SDA1 family protein	F:binding;P:biological_process unknown;C:cellular_component unknown;BMOFPVA	O.I.	C.G.	H.G.
37.8	99.8	309.6	At4g27160	828824	AT2S3	F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO	O.I.	C.G.	H.G.
37.7	99.7	51.5	At1g32860	840180	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;POF	O.I.	C.G.	H.G.
37.5	99.7	33.7	At4g24660	828568	ATHB22 (HOMEOBOX PROTEIN 22)	F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy;C:nucleus;PM	O.I.	C.G.	H.G.
37.1	99.7	164.0	At3g23620	821942	brix domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MFOP	O.I.	C.G.	H.G.
37.1	99.7	8.9	At2g27610	817307	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBA	O.I.	C.G.	H.G.
36.7	99.7	229.1	At5g08260	830722	scpl35 (serine carboxypeptidase-like 35)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
36.7	99.7	91.1	At5g62440	836365	-	Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.	O.I.	C.G.	H.G.
36.3	99.7	25.9	At3g02990	821162	ATHSFA1E	member of Heat Stress Transcription Factor (Hsf) family	O.I.	C.G.	H.G.
35.5	99.7	42.6	At1g16280	838197	DEAD/DEAH box helicase, putative	F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
35.1	99.7	36.8	At2g38340	818414	AP2 domain-containing transcription factor, putative (DRE2B)	encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	O.I.	C.G.	H.G.
35.1	99.7	21.9	At5g53290	835410	CRF3 (CYTOKININ RESPONSE FACTOR 3)	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
34.7	99.7	25.7	At4g39500	830104	CYP96A11	member of CYP96A	O.I.	C.G.	H.G.
34.1	99.7	117.8	At3g55010	824667	PUR5	encoding phosphoribosylformylglycinamidine cyclo-ligase (syn. AIR synthetase)that phosphorylates 5-phosphoribosyl-N-formylglycinamidine (FGAM) to form 5-aminoimidazole ribonucleotide (AIR)	O.I.	C.G.	H.G.
34.0	99.7	99.7	At5g45650	834605	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM	O.I.	C.G.	H.G.
33.9	99.7	48.2	At1g03360	839521	ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4)	F:RNA binding, exonuclease activity;P:unknown;C:mitochondrion;OMAFP	O.I.	C.G.	H.G.
33.9	99.7	32.6	At3g57940	824963	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFAPV	O.I.	C.G.	H.G.
33.4	99.7	19.5	At4g25990	828705	CIL	chloroplast import apparatus CIA2-like. CIA2 is a transcription factor which upregulates chloroplast translocon genes	O.I.	C.G.	H.G.
33.2	99.7	129.5	At1g64970	842805	G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)	gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leaves	O.I.	C.G.	H.G.
33.0	99.7	86.9	At2g16570	816156	ATASE1 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1)	Amidophosphoribosyltransferase (ATase: EC 2.4.2.14) is a key enzyme in the pathway of purine nucleotide biosynthesis	O.I.	C.G.	H.G.
32.9	99.7	128.4	At5g52820	835359	WD-40 repeat family protein / notchless protein, putative	F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;MFOPBAV	O.I.	C.G.	H.G.
32.5	99.7	202.7	At1g02640	837940	BXL2 (BETA-XYLOSIDASE 2)	encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.	O.I.	C.G.	H.G.
32.5	99.7	109.7	At5g55920	835690	nucleolar protein, putative	F:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVA	O.I.	C.G.	H.G.
32.3	99.7	62.4	At3g55510	824716	RBL (REBELOTE)	F:unknown;P:floral meristem determinacy;C:nucleus;MFOP	O.I.	C.G.	H.G.
32.3	99.7	54.7	At5g61770	836299	PPAN (PETER PAN-LIKE PROTEIN)	F:unknown;P:unknown;C:cellular_component unknown;MOFPVB	O.I.	C.G.	H.G.
31.9	99.7	113.1	At4g01560	828136	MEE49 (maternal effect embryo arrest 49)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;FMOPA	O.I.	C.G.	H.G.
31.8	99.7	132.2	At3g62940	825469	OTU-like cysteine protease family protein	F:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
31.8	99.7	40.7	At4g37090	829863	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA	O.I.	C.G.	H.G.
31.6	99.7	238.8	At2g27380	817282	ATEPR1	Encodes an extensin like gene involved in seed germination.	O.I.	C.G.	H.G.
31.0	99.7	28.4	At5g67520	836888	adenylylsulfate kinase, putative	F:kinase activity, transferase activity, transferring phosphorus-containing groups, ATP binding;P:sulfate assimilation;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
30.5	99.7	319.1	At3g57150	824882	NAP57 (Arabidopsis thaliana homologue of NAP57)	Encodes a putative pseudouridine synthase (NAP57).	O.I.	C.G.	H.G.
30.4	99.7	70.0	At3g11964	820370	RNA binding	F:RNA binding;P:mRNA processing, RNA processing;C:nucleolus, plasma membrane;BOMFPA	O.I.	C.G.	H.G.
30.2	99.7	85.6	At3g17465	821011	RPL3P (RIBOSOMAL PROTEIN L3 PLASTID)	encodes a putative L3 ribosomal protein targeted to the plastid.	O.I.	C.G.	H.G.
29.9	99.7	153.6	At4g38130	829969	HD1 (HISTONE DEACETYLASE 1)	Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.	O.I.	C.G.	H.G.
29.9	99.7	46.9	At5g59240	836042	40S ribosomal protein S8 (RPS8B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane;MAOFP	O.I.	C.G.	H.G.
29.8	99.7	36.6	At5g26860	832744	LON1 (LON PROTEASE 1)	Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790). Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells. Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.	O.I.	C.G.	H.G.
29.7	99.7	44.5	At3g15180	820749	proteasome-related	F:binding;P:biological_process unknown;C:plasma membrane;MPOB	O.I.	C.G.	H.G.
29.6	99.7	65.9	At5g13870	831233	EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)	EXGT-A4, endoxyloglucan transferase,	O.I.	C.G.	H.G.
29.5	99.7	31.1	At1g20300	838618	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:unknown;C:unknown;POMFBA	O.I.	C.G.	H.G.
29.4	99.7	97.9	At4g25340	828637	immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:nucleolus;MOBFPVA	O.I.	C.G.	H.G.
28.7	99.7	288.4	At5g67360	836871	ARA12	Encodes a subtilisin-like serine protease essential for mucilage release from seed coats.	O.I.	C.G.	H.G.
28.7	99.7	21.5	At4g01990	828172	pentatricopeptide (PPR) repeat-containing protein	F:binding;P:biological_process unknown;C:cellular_component unknown;POFMB	O.I.	C.G.	H.G.
28.4	99.7	95.4	At3g19920	821530	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
27.9	99.7	70.8	At1g18850	838466	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:nucleolus;P	O.I.	C.G.	H.G.
27.9	99.7	38.8	At4g04940	825833	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:rRNA processing;C:CUL4 RING ubiquitin ligase complex;MFBOPA	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-MEXP-849-raw-cel-1181981030
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-849-raw-cel-1181981030 GSE experiment -

GSM ID -

Assay name E-MEXP-849-raw-cel-1181981030

GSE experiment -