Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-MEXP-849-raw-cel-1181981014
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
204.2100.0256.3At1g43780840974scpl44 (serine carboxypeptidase-like 44)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.C.G.H.G.
161.099.947.3At4g11140826715CRF1 (CYTOKININ RESPONSE FACTOR 1)encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1).O.I.C.G.H.G.
141.999.9424.7At1g75830843916LCR67Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
95.299.942.0At5g09970830858CYP78A7member of CYP78AO.I.C.G.H.G.
90.599.928.8At5g17490831615RGL3 (RGA-LIKE PROTEIN 3)DELLA subfamily member involved in GA signal transductionO.I.C.G.H.G.
89.999.9308.9At1g26770839218ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
82.499.987.4At4g24150828515AtGRF8 (GROWTH-REGULATING FACTOR 8)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.O.I.C.G.H.G.
81.499.973.3At3g12860820468nucleolar protein Nop56, putativeF:unknown;P:biological_process unknown;C:unknown;MOFPBAVO.I.C.G.H.G.
80.099.959.8At4g23750828475CRF2 (CYTOKININ RESPONSE FACTOR 2)encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.O.I.C.G.H.G.
73.199.968.1At3g13960820609AtGRF5 (GROWTH-REGULATING FACTOR 5)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower.O.I.C.G.H.G.
71.399.9309.9At5g14450831296GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOMO.I.C.G.H.G.
67.899.9319.9At5g05290830411ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
64.399.893.8At3g12270820407PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3)F:methyltransferase activity, zinc ion binding;P:metabolic process;C:intracellular;MBOFPAO.I.C.G.H.G.
58.699.8115.2At3g22660821837rRNA processing protein-relatedF:unknown;P:unknown;C:cellular_component unknown;MOFBPO.I.C.G.H.G.
57.499.8286.9At4g271508288232S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;POO.I.C.G.H.G.
56.999.841.3At4g37890829945EDA40 (embryo sac development arrest 40)F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:polar nucleus fusion;C:plasma membrane;PBOFMO.I.C.G.H.G.
53.899.8369.7At4g27160828824AT2S3F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;POO.I.C.G.H.G.
53.299.823.1At2g24560816992carboxylesterase/ hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
52.499.826.7At5g53290835410CRF3 (CYTOKININ RESPONSE FACTOR 3)encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.O.I.C.G.H.G.
51.399.821.7At3g12770820459pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBO.I.C.G.H.G.
49.699.845.9At4g19240827664unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
49.199.855.0At5g57390835845AIL5 (AINTEGUMENTA-LIKE 5)Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations.O.I.C.G.H.G.
48.199.8528.5At4g28520828970CRU3 (CRUCIFERIN 3)Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.C.G.H.G.
45.999.857.2At1g10270837566GRP23 (GLUTAMINE-RICH PROTEIN23)F:binding;P:embryonic development, cell division;C:nucleus;PMOFBVAO.I.C.G.H.G.
45.499.860.9At4g02400828039-F:molecular_function unknown;P:rRNA processing;C:small-subunit processome;MOFBPVAO.I.C.G.H.G.
44.999.818.1At1g72570843589DNA binding / transcription factorF:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBVO.I.C.G.H.G.
44.899.827.8At2g29090817457CYP707A2Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition.O.I.C.G.H.G.
44.299.8307.0At4g36880829841CP1 (CYSTEINE PROTEINASE1)F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
43.399.880.4At2g19670816486PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A)F:protein-arginine N-methyltransferase activity;P:unknown;C:unknown;MBOPFAO.I.C.G.H.G.
42.599.8148.0At1g04870839393PRMT10Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.O.I.C.G.H.G.
41.999.893.7At5g14570831308ATNRT2.7 (Arabidopsis thaliana high affinity nitrate transporter 2.7)Encodes ATNRT2.7, a nitrate transporter that controls nitrate content in seeds. Expression is detected in reproductive organs and peaks in seeds. Localized to the vacuolar membrane.O.I.C.G.H.G.
41.899.8125.0At4g29510829072PRMT11 (ARGININE METHYLTRANSFERASE 11)Has arginine N-methyltransferase activity. Modifies AtMBD7.O.I.C.G.H.G.
41.599.8166.3At2g37640818341EXP3member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
41.599.873.9At3g06530819831bindingF:binding;P:unknown;C:chloroplast, vacuole;MFOPBO.I.C.G.H.G.
41.399.8165.8At5g02050831729mitochondrial glycoprotein family protein / MAM33 family proteinF:unknown;P:biological_process unknown;C:chloroplast, mitochondrial matrix;PFOMBO.I.C.G.H.G.
41.399.831.0At1g02370837735pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:unknown;POMFBO.I.C.G.H.G.
39.999.870.2At3g10530820218transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;BMFOPAO.I.C.G.H.G.
39.699.825.1At5g16930831556AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;OMBFPAVO.I.C.G.H.G.
39.499.825.5At2g40220818614ABI4 (ABA INSENSITIVE 4)encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings.O.I.C.G.H.G.
39.099.868.3At3g15460820785brix domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
38.499.876.3At1g79470844285inosine-5'-monophosphate dehydrogenaseF:IMP dehydrogenase activity, catalytic activity;P:GMP biosynthetic process, metabolic process;C:unknown;OBMFAPVO.I.C.G.H.G.
36.099.723.3At4g36580829810AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;OBMFPAVO.I.C.G.H.G.
35.699.790.1At1g1525083809260S ribosomal protein L37 (RPL37A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.C.G.H.G.
35.199.7251.8At2g27380817282ATEPR1Encodes an extensin like gene involved in seed germination.O.I.C.G.H.G.
34.599.7222.0At5g08260830722scpl35 (serine carboxypeptidase-like 35)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
34.199.7392.6At1g52690841701late embryogenesis abundant protein, putative / LEA protein, putativeF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PBMOFVAO.I.C.G.H.G.
33.999.7206.9At1g02640837940BXL2 (BETA-XYLOSIDASE 2)encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.O.I.C.G.H.G.
33.099.786.4At5g62440836365-Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.O.I.C.G.H.G.
32.699.7108.7At3g57000824867nucleolar essential protein-relatedF:molecular_function unknown;P:unknown;C:nucleus;MOFAPBVO.I.C.G.H.G.
31.699.7410.2At1g03880839383CRU2 (CRUCIFERIN 2)Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.C.G.H.G.
31.299.7143.0At1g29980839877-F:unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;PBO.I.C.G.H.G.
30.399.7238.9At1g56110842063NOP56 (Arabidopsis homolog of nucleolar protein Nop56)NOP56-like proteinO.I.C.G.H.G.
30.399.732.5At1g22600838866-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO.I.C.G.H.G.
30.299.744.6At1g13160837874SDA1 family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;BMOFPVAO.I.C.G.H.G.
29.299.729.7At4g24660828568ATHB22 (HOMEOBOX PROTEIN 22)F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy;C:nucleus;PMO.I.C.G.H.G.
29.099.7143.8At1g62710842569BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins.O.I.C.G.H.G.
28.999.769.1At4g05410825889transducin family protein / WD-40 repeat family proteinF:nucleotide binding, nucleic acid binding;P:mitochondrial fission;C:nucleolus, small nucleolar ribonucleoprotein complex, anaphase-promoting complex, CUL4 RING ubiquitin ligase complex;MFOBPVAO.I.C.G.H.G.
28.999.753.7At2g19385816457zinc ion bindingF:zinc ion binding;P:biological_process unknown;C:intracellular;MOFPBO.I.C.G.H.G.
27.799.736.7At5g19300832050-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBAVO.I.C.G.H.G.
27.399.797.1At1g15440838115transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAO.I.C.G.H.G.
27.399.793.6At3g19920821530unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
27.399.710.3At1g05330837032unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
26.999.770.1At5g64420836563DNA polymerase V familyF:DNA-directed DNA polymerase activity, DNA binding;P:DNA replication, transcription;C:cellular_component unknown;MOFBPVO.I.C.G.H.G.
26.999.722.3At3g02990821162ATHSFA1Emember of Heat Stress Transcription Factor (Hsf) familyO.I.C.G.H.G.
26.499.7139.1At5g66920836826sks17 (SKU5 Similar 17)F:oxidoreductase activity, copper ion binding;P:unknown;C:cell wall, plant-type cell wall;FBPMOAO.I.C.G.H.G.
26.199.7114.5At2g41280818727M10Encodes a hydrophilic protein similar to Late Embryogenesis Activated (LEA) proteins expressed during embryogenesis, which are thought to be involved in the acquisition of dessication tolerance.O.I.C.G.H.G.
26.199.734.3At5g26860832744LON1 (LON PROTEASE 1)Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790). Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells. Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.O.I.C.G.H.G.
25.699.766.9At2g47990819411SWA1 (SLOW WALKER1)Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant.O.I.C.G.H.G.
25.099.6108.5At5g60960836217pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMO.I.C.G.H.G.
25.099.616.8At4g25990828705CILchloroplast import apparatus CIA2-like. CIA2 is a transcription factor which upregulates chloroplast translocon genesO.I.C.G.H.G.
24.899.657.5At4g00600825813tetrahydrofolate dehydrogenase/cyclohydrolase, putativeF:binding, catalytic activity;P:folic acid and derivative biosynthetic process, metabolic process;C:chloroplast;BOMFPAO.I.C.G.H.G.
24.799.6139.7At4g38130829969HD1 (HISTONE DEACETYLASE 1)Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.O.I.C.G.H.G.
24.799.624.9At3g13150820503pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMBFVAO.I.C.G.H.G.
24.799.614.5At3g02010821085pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFO.I.C.G.H.G.
24.699.6286.6At3g57150824882NAP57 (Arabidopsis thaliana homologue of NAP57)Encodes a putative pseudouridine synthase (NAP57).O.I.C.G.H.G.
24.699.669.4At1g01940839309peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinF:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:cellular_component unknown;OBMFPAO.I.C.G.H.G.
24.599.6274.9At5g03860831690MLS (MALATE SYNTHASE)Encodes a protein with malate synthase activity.O.I.C.G.H.G.
24.599.699.8At3g55010824667PUR5encoding phosphoribosylformylglycinamidine cyclo-ligase (syn. AIR synthetase)that phosphorylates 5-phosphoribosyl-N-formylglycinamidine (FGAM) to form 5-aminoimidazole ribonucleotide (AIR)O.I.C.G.H.G.
24.499.6163.6At2g19540816473transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOPBAO.I.C.G.H.G.
24.499.6115.9At3g62940825469OTU-like cysteine protease family proteinF:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
24.099.6132.0At3g23620821942brix domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:nucleolus;MFOPO.I.C.G.H.G.
23.599.642.3At5g54300835518unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBAO.I.C.G.H.G.
23.499.6260.5At5g67360836871ARA12Encodes a subtilisin-like serine protease essential for mucilage release from seed coats.O.I.C.G.H.G.
23.399.6150.2At5g61030836224GR-RBP3 (glycine-rich RNA-binding protein 3)encodes a glycine-rich RNA binding protein. Gene expression is induced by cold.O.I.C.G.H.G.
23.199.621.0At4g39500830104CYP96A11member of CYP96AO.I.C.G.H.G.
23.099.657.5At4g25730828678FtsJ-like methyltransferase family proteinF:methyltransferase activity;P:rRNA processing, rRNA methylation;C:nucleus;OMBFPVAO.I.C.G.H.G.
23.099.629.8At3g21540821708transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:rRNA processing;C:nucleolus, heterotrimeric G-protein complex;MFOPBAO.I.C.G.H.G.
22.999.681.7At5g45650834605subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.C.G.H.G.
22.999.634.3At1g75200843857flavodoxin family protein / radical SAM domain-containing proteinF:in 6 functions;P:unknown;C:unknown;MBOFPAO.I.C.G.H.G.
22.399.649.3At2g22420816773peroxidase 17 (PER17) (P17)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBO.I.C.G.H.G.
22.199.693.2At1g80270844367DNA-binding protein, putativeF:DNA binding;P:biological_process unknown;C:chloroplast envelope;POMFO.I.C.G.H.G.
22.099.641.8At5g38720833863unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
21.899.636.6At2g4001081858960S acidic ribosomal protein P0 (RPP0A)F:structural constituent of ribosome;P:translational elongation, translation, ribosome biogenesis;C:cytosolic ribosome, ribosome;MOAFPBO.I.C.G.H.G.
21.699.6324.2At5g11520831024ASP3 (ASPARTATE AMINOTRANSFERASE 3)Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves.O.I.C.G.H.G.
21.499.6315.9At3g08030819994unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cell wall;PBO.I.C.G.H.G.
21.499.681.7At5g14050831254transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;BMOFPAVO.I.C.G.H.G.
21.399.667.1At2g45730819181eukaryotic initiation factor 3 gamma subunit family proteinF:translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:cellular_component unknown;MFOPO.I.C.G.H.G.
21.299.637.6At3g15180820749proteasome-relatedF:binding;P:biological_process unknown;C:plasma membrane;MPOBO.I.C.G.H.G.
21.199.635.0At3g59670825136unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
20.899.6102.4At1g64970842805G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leavesO.I.C.G.H.G.



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