CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-828-raw-cel-1156922438

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
247.8 100.0 114.8 At5g07130 830604 LAC13 (laccase 13) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). O.I. C.G. H.G.
209.6 100.0 110.1 At4g08620 826426 SULTR1 High affinity sulfate transporter. Contains STAS domain, essential for sulfur uptake function. Expressed in roots and guard cells. Up-regulated by sulfur deficiency. Down-regulated by cytokinin. Localized to the plasma membrane. O.I. C.G. H.G.
200.3 100.0 745.7 At1g08090 837327 ATNRT2:1 (NITRATE TRANSPORTER 2:1) High-affinity nitrate transporter. Up-regulated by nitrate. Functions as a repressor of lateral root initiation independently of nitrate uptake. O.I. C.G. H.G.
187.3 100.0 338.8 At1g64590 842767 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
120.5 99.9 109.5 At1g70880 843425 Bet v I allergen family protein F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
115.2 99.9 169.1 At3g24290 822017 AMT1 F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPA O.I. C.G. H.G.
107.9 99.9 39.5 At5g04730 830351 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
106.9 99.9 38.4 At1g78990 844239 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
103.5 99.9 137.0 At5g13580 831202 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPV O.I. C.G. H.G.
99.7 99.9 76.7 At5g37450 833722 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
97.1 99.9 212.0 At1g18970 838478 GLP4 (GERMIN-LIKE PROTEIN 4) Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record). O.I. C.G. H.G.
88.7 99.9 135.5 At5g09520 830811 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA O.I. C.G. H.G.
85.5 99.9 27.6 At4g04990 825841 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBV O.I. C.G. H.G.
79.1 99.9 151.9 At2g48140 819426 EDA4 (embryo sac development arrest 4) F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFV O.I. C.G. H.G.
78.2 99.9 627.0 At5g09530 830812 hydroxyproline-rich glycoprotein family protein F:unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
77.1 99.9 35.8 At5g10100 830874 trehalose-6-phosphate phosphatase, putative F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:chloroplast;BPMOFA O.I. C.G. H.G.
72.4 99.9 86.5 At3g53510 824519 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV O.I. C.G. H.G.
60.8 99.8 158.8 At1g74460 843787 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
59.4 99.8 92.5 At1g11540 837697 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBAP O.I. C.G. H.G.
57.6 99.8 57.7 At2g42060 818806 CHP-rich zinc finger protein, putative F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PM O.I. C.G. H.G.
56.0 99.8 10.7 At1g61080 842400 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MBOFPVA O.I. C.G. H.G.
55.7 99.8 53.9 At2g28160 817362 FRU (FER-LIKE REGULATOR OF IRON UPTAKE) Encodes a putative transcription factor that regulates iron uptake responses. mRNA is detected in the outer cell layers of the root and accumulates in response to iron deficiency. The expression of many iron-regulated genes is dependent on FIT1. It specifically regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation.Similar to FER in tomato and is a regulator of iron uptake. O.I. C.G. H.G.
53.8 99.8 23.0 At5g50590 835128 AtHSD4 (hydroxysteroid dehydrogenase 4) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
52.3 99.8 122.8 At1g29020 839776 calcium-binding EF hand family protein F:calcium ion binding;P:unknown;C:endomembrane system;PMOAF O.I. C.G. H.G.
51.7 99.8 121.1 At2g48130 819425 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;PBOM O.I. C.G. H.G.
50.8 99.8 43.0 At3g27150 822334 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA O.I. C.G. H.G.
50.2 99.8 334.5 At3g22620 821833 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:chloroplast envelope;POBMFV O.I. C.G. H.G.
49.8 99.8 31.7 At2g28270 817373 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
49.4 99.8 97.8 At4g17280 827442 - F:unknown;P:multicellular organismal development;C:membrane;P O.I. C.G. H.G.
48.9 99.8 260.9 At3g02910 821189 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOA O.I. C.G. H.G.
48.9 99.8 93.4 At3g20015 821540 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO O.I. C.G. H.G.
47.0 99.8 22.3 At4g38340 829991 RWP-RK domain-containing protein F:transcription factor activity;P:regulation of transcription;C:unknown;POFB O.I. C.G. H.G.
45.6 99.8 33.8 At3g51350 824298 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBAV O.I. C.G. H.G.
45.5 99.8 28.9 At1g79320 844270 AtMC6 (metacaspase 6) F:cysteine-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;BOFPA O.I. C.G. H.G.
45.1 99.8 21.6 At3g32040 822957 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBPFMAV O.I. C.G. H.G.
41.6 99.8 100.6 At1g49310 841354 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
41.3 99.8 33.8 At3g22800 821851 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
40.7 99.8 9.5 At5g52350 835311 ATEXO70A3 (exocyst subunit EXO70 family protein A3) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. O.I. C.G. H.G.
39.8 99.8 40.4 At5g23190 832383 CYP86B1 cytochrome P450 CYP86B1, nuclear gene for chloroplast product O.I. C.G. H.G.
39.2 99.8 85.4 At3g05950 819765 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFBO O.I. C.G. H.G.
39.0 99.8 361.7 At1g49860 841409 ATGSTF14 Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
38.7 99.8 271.4 At1g26250 839166 proline-rich extensin, putative F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
38.6 99.8 71.3 At4g36610 829813 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOMPFA O.I. C.G. H.G.
37.8 99.8 370.4 At3g54040 824571 photoassimilate-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
36.7 99.7 21.8 At1g03700 839428 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
36.4 99.7 80.4 At5g44550 834482 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
35.5 99.7 14.8 At2g43390 818940 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
35.2 99.7 205.2 At4g30670 829190 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
35.2 99.7 64.4 At1g68850 843218 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
34.5 99.7 12.2 At4g26560 828763 CBL7 (CALCINEURIN B-LIKE 7) Encodes calcineurin B-like protein 7 (CBL7). O.I. C.G. H.G.
34.3 99.7 162.6 At4g14630 827113 GLP9 (GERMIN-LIKE PROTEIN 9) germin-like protein with N-terminal signal sequence that may target it to the vacuole, plasma membrane and/or outside the cell. O.I. C.G. H.G.
34.2 99.7 60.0 At2g39380 818523 ATEXO70H2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H2) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. O.I. C.G. H.G.
34.1 99.7 37.7 At5g15130 831365 WRKY72 member of WRKY Transcription Factor; Group II-b O.I. C.G. H.G.
34.0 99.7 403.9 At4g15390 827205 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
33.9 99.7 177.0 At5g66690 836802 UGT72E2 UGT72E2 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl aldehydes as well as sinapyl- and coniferyl alcohol. The enzyme is thought to be involved in lignin metabolism. A knockdown mutant line (72E2KD) was obtained using RNAi silencing. A twofold reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype. In comparison, both knockout and knockdown lines of UGT72E1 and UGT72E3, respectively, failed to display the same reduction in phenylpropanoid 4-O-glucosides. O.I. C.G. H.G.
33.9 99.7 46.6 At1g60470 842342 AtGolS4 (Arabidopsis thaliana galactinol synthase 4) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO O.I. C.G. H.G.
33.5 99.7 20.6 At1g55990 842050 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPM O.I. C.G. H.G.
33.3 99.7 34.0 At5g45080 834539 AtPP2-A6 (Phloem protein 2-A6) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P O.I. C.G. H.G.
33.2 99.7 269.0 At4g38080 829964 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOVBFA O.I. C.G. H.G.
33.1 99.7 15.8 At3g45330 823671 lectin protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
32.7 99.7 283.7 At5g43350 834353 PHT1 Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation. O.I. C.G. H.G.
32.6 99.7 300.1 At5g50200 835085 WR3 (WOUND-RESPONSIVE 3) Wound-responsive gene 3 (WR3). Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction. O.I. C.G. H.G.
32.6 99.7 89.3 At1g04220 839578 KCS2 (3-KETOACYL-COA SYNTHASE 2) Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
31.5 99.7 12.3 At1g17950 838374 MYB52 (MYB DOMAIN PROTEIN 52) putative transcription factor: R2R3-MYB transcription family O.I. C.G. H.G.
30.9 99.7 41.8 At1g26240 839165 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
30.0 99.7 101.0 At2g44010 819006 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
29.3 99.7 277.5 At1g78000 844135 SULTR1 Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes. O.I. C.G. H.G.
29.1 99.7 68.8 At2g29750 817525 UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1) F:quercetin 3'-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF O.I. C.G. H.G.
29.0 99.7 58.7 At3g11430 820316 GPAT5 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 5) Encodes a protein with glycerol-3-phosphate acyltransferase activity, involved in the biosynthesis of suberin polyester. O.I. C.G. H.G.
28.8 99.7 25.3 At2g28960 817445 leucine-rich repeat protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
28.7 99.7 47.4 At5g59680 836089 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
28.7 99.7 27.4 At1g80450 844384 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
28.4 99.7 29.7 At4g15740 827252 C2 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
27.7 99.7 20.6 At4g29800 829102 PLP8 (PATATIN-LIKE PROTEIN 8) F:unknown;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOFM O.I. C.G. H.G.
27.6 99.7 77.7 At5g12420 831117 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF O.I. C.G. H.G.
27.0 99.7 82.5 At3g03670 821193 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOB O.I. C.G. H.G.
26.4 99.7 122.7 At2g29995 817550 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
26.3 99.7 38.0 At3g15300 820761 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM O.I. C.G. H.G.
26.1 99.7 16.3 At5g19700 832090 MATE efflux protein-related F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
26.0 99.7 81.9 At5g25890 832658 IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28) encodes a protein that may be a negative regulator of lateral root formation in response to auxin. It is a member of IAA/ARF gene family and is plant-specific. Gain of function mutations in this gene suppresses lateral root formation and is resistant to inhibition of root elongation by auxin, cytokinin, and ethylene. O.I. C.G. H.G.
25.8 99.7 14.3 At4g18630 827597 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOF O.I. C.G. H.G.
25.6 99.7 344.4 At2g01520 814681 MLP328 (MLP-LIKE PROTEIN 328) F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
25.3 99.6 260.7 At2g21045 816639 - F:unknown;P:aging;C:unknown;BOPAFM O.I. C.G. H.G.
25.2 99.6 31.4 At3g31415 822906 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
25.0 99.6 70.3 At2g40900 818687 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;BOPAM O.I. C.G. H.G.
24.8 99.6 62.8 At1g60680 842362 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOMFPA O.I. C.G. H.G.
24.8 99.6 15.8 At4g33710 829513 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFBO O.I. C.G. H.G.
24.7 99.6 42.6 At1g01190 839233 CYP78A8 member of CYP78A O.I. C.G. H.G.
24.4 99.6 23.1 At2g28850 817434 CYP710A3 (cytochrome P450, family 710, subfamily A, polypeptide 3) member of CYP710A O.I. C.G. H.G.
24.3 99.6 133.4 At4g07820 826263 pathogenesis-related protein, putative F:molecular_function unknown;P:unknown;C:endomembrane system, extracellular region;PMFBO O.I. C.G. H.G.
24.1 99.6 43.7 At1g31885 840079 transporter F:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAV O.I. C.G. H.G.
24.1 99.6 23.8 At4g25090 828612 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA O.I. C.G. H.G.
24.0 99.6 41.9 At4g35380 829691 guanine nucleotide exchange family protein F:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPBA O.I. C.G. H.G.
24.0 99.6 31.9 At2g16760 816177 - F:molecular_function unknown;P:unknown;C:endoplasmic reticulum;PBO O.I. C.G. H.G.
23.8 99.6 92.6 At1g14730 838038 - F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOF O.I. C.G. H.G.
23.6 99.6 21.1 At3g46270 823772 receptor protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPBOFVA O.I. C.G. H.G.
23.5 99.6 14.5 At4g11230 826725 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 6 functions;P:oxidation reduction;C:integral to membrane, membrane;MFPBOA O.I. C.G. H.G.
23.0 99.6 78.8 At3g21510 821705 AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1) Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6). O.I. C.G. H.G.
22.6 99.6 25.2 At1g52820 841715 2-oxoglutarate-dependent dioxygenase, putative F:oxidoreductase activity;P:unknown;C:unknown;POBFM O.I. C.G. H.G.
22.4 99.6 150.4 At5g22630 832326 ADT5 (arogenate dehydratase 5) Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identiﬁed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250]. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
247.8	100.0	114.8	At5g07130	830604	LAC13 (laccase 13)	putative laccase, a member of laccase family of genes (17 members in Arabidopsis).	O.I.	C.G.	H.G.
209.6	100.0	110.1	At4g08620	826426	SULTR1	High affinity sulfate transporter. Contains STAS domain, essential for sulfur uptake function. Expressed in roots and guard cells. Up-regulated by sulfur deficiency. Down-regulated by cytokinin. Localized to the plasma membrane.	O.I.	C.G.	H.G.
200.3	100.0	745.7	At1g08090	837327	ATNRT2:1 (NITRATE TRANSPORTER 2:1)	High-affinity nitrate transporter. Up-regulated by nitrate. Functions as a repressor of lateral root initiation independently of nitrate uptake.	O.I.	C.G.	H.G.
187.3	100.0	338.8	At1g64590	842767	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
120.5	99.9	109.5	At1g70880	843425	Bet v I allergen family protein	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
115.2	99.9	169.1	At3g24290	822017	AMT1	F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPA	O.I.	C.G.	H.G.
107.9	99.9	39.5	At5g04730	830351	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
106.9	99.9	38.4	At1g78990	844239	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
103.5	99.9	137.0	At5g13580	831202	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPV	O.I.	C.G.	H.G.
99.7	99.9	76.7	At5g37450	833722	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
97.1	99.9	212.0	At1g18970	838478	GLP4 (GERMIN-LIKE PROTEIN 4)	Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record).	O.I.	C.G.	H.G.
88.7	99.9	135.5	At5g09520	830811	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA	O.I.	C.G.	H.G.
85.5	99.9	27.6	At4g04990	825841	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBV	O.I.	C.G.	H.G.
79.1	99.9	151.9	At2g48140	819426	EDA4 (embryo sac development arrest 4)	F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFV	O.I.	C.G.	H.G.
78.2	99.9	627.0	At5g09530	830812	hydroxyproline-rich glycoprotein family protein	F:unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
77.1	99.9	35.8	At5g10100	830874	trehalose-6-phosphate phosphatase, putative	F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:chloroplast;BPMOFA	O.I.	C.G.	H.G.
72.4	99.9	86.5	At3g53510	824519	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV	O.I.	C.G.	H.G.
60.8	99.8	158.8	At1g74460	843787	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
59.4	99.8	92.5	At1g11540	837697	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBAP	O.I.	C.G.	H.G.
57.6	99.8	57.7	At2g42060	818806	CHP-rich zinc finger protein, putative	F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
56.0	99.8	10.7	At1g61080	842400	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MBOFPVA	O.I.	C.G.	H.G.
55.7	99.8	53.9	At2g28160	817362	FRU (FER-LIKE REGULATOR OF IRON UPTAKE)	Encodes a putative transcription factor that regulates iron uptake responses. mRNA is detected in the outer cell layers of the root and accumulates in response to iron deficiency. The expression of many iron-regulated genes is dependent on FIT1. It specifically regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation.Similar to FER in tomato and is a regulator of iron uptake.	O.I.	C.G.	H.G.
53.8	99.8	23.0	At5g50590	835128	AtHSD4 (hydroxysteroid dehydrogenase 4)	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
52.3	99.8	122.8	At1g29020	839776	calcium-binding EF hand family protein	F:calcium ion binding;P:unknown;C:endomembrane system;PMOAF	O.I.	C.G.	H.G.
51.7	99.8	121.1	At2g48130	819425	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;PBOM	O.I.	C.G.	H.G.
50.8	99.8	43.0	At3g27150	822334	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA	O.I.	C.G.	H.G.
50.2	99.8	334.5	At3g22620	821833	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:chloroplast envelope;POBMFV	O.I.	C.G.	H.G.
49.8	99.8	31.7	At2g28270	817373	DC1 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
49.4	99.8	97.8	At4g17280	827442	-	F:unknown;P:multicellular organismal development;C:membrane;P	O.I.	C.G.	H.G.
48.9	99.8	260.9	At3g02910	821189	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOA	O.I.	C.G.	H.G.
48.9	99.8	93.4	At3g20015	821540	aspartic-type endopeptidase	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO	O.I.	C.G.	H.G.
47.0	99.8	22.3	At4g38340	829991	RWP-RK domain-containing protein	F:transcription factor activity;P:regulation of transcription;C:unknown;POFB	O.I.	C.G.	H.G.
45.6	99.8	33.8	At3g51350	824298	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBAV	O.I.	C.G.	H.G.
45.5	99.8	28.9	At1g79320	844270	AtMC6 (metacaspase 6)	F:cysteine-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;BOFPA	O.I.	C.G.	H.G.
45.1	99.8	21.6	At3g32040	822957	geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative	F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBPFMAV	O.I.	C.G.	H.G.
41.6	99.8	100.6	At1g49310	841354	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
41.3	99.8	33.8	At3g22800	821851	leucine-rich repeat family protein / extensin family protein	F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
40.7	99.8	9.5	At5g52350	835311	ATEXO70A3 (exocyst subunit EXO70 family protein A3)	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	O.I.	C.G.	H.G.
39.8	99.8	40.4	At5g23190	832383	CYP86B1	cytochrome P450 CYP86B1, nuclear gene for chloroplast product	O.I.	C.G.	H.G.
39.2	99.8	85.4	At3g05950	819765	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFBO	O.I.	C.G.	H.G.
39.0	99.8	361.7	At1g49860	841409	ATGSTF14	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
38.7	99.8	271.4	At1g26250	839166	proline-rich extensin, putative	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
38.6	99.8	71.3	At4g36610	829813	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOMPFA	O.I.	C.G.	H.G.
37.8	99.8	370.4	At3g54040	824571	photoassimilate-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
36.7	99.7	21.8	At1g03700	839428	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
36.4	99.7	80.4	At5g44550	834482	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
35.5	99.7	14.8	At2g43390	818940	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
35.2	99.7	205.2	At4g30670	829190	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
35.2	99.7	64.4	At1g68850	843218	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
34.5	99.7	12.2	At4g26560	828763	CBL7 (CALCINEURIN B-LIKE 7)	Encodes calcineurin B-like protein 7 (CBL7).	O.I.	C.G.	H.G.
34.3	99.7	162.6	At4g14630	827113	GLP9 (GERMIN-LIKE PROTEIN 9)	germin-like protein with N-terminal signal sequence that may target it to the vacuole, plasma membrane and/or outside the cell.	O.I.	C.G.	H.G.
34.2	99.7	60.0	At2g39380	818523	ATEXO70H2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H2)	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	O.I.	C.G.	H.G.
34.1	99.7	37.7	At5g15130	831365	WRKY72	member of WRKY Transcription Factor; Group II-b	O.I.	C.G.	H.G.
34.0	99.7	403.9	At4g15390	827205	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
33.9	99.7	177.0	At5g66690	836802	UGT72E2	UGT72E2 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl aldehydes as well as sinapyl- and coniferyl alcohol. The enzyme is thought to be involved in lignin metabolism. A knockdown mutant line (72E2KD) was obtained using RNAi silencing. A twofold reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype. In comparison, both knockout and knockdown lines of UGT72E1 and UGT72E3, respectively, failed to display the same reduction in phenylpropanoid 4-O-glucosides.	O.I.	C.G.	H.G.
33.9	99.7	46.6	At1g60470	842342	AtGolS4 (Arabidopsis thaliana galactinol synthase 4)	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO	O.I.	C.G.	H.G.
33.5	99.7	20.6	At1g55990	842050	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPM	O.I.	C.G.	H.G.
33.3	99.7	34.0	At5g45080	834539	AtPP2-A6 (Phloem protein 2-A6)	F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P	O.I.	C.G.	H.G.
33.2	99.7	269.0	At4g38080	829964	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOVBFA	O.I.	C.G.	H.G.
33.1	99.7	15.8	At3g45330	823671	lectin protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
32.7	99.7	283.7	At5g43350	834353	PHT1	Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation.	O.I.	C.G.	H.G.
32.6	99.7	300.1	At5g50200	835085	WR3 (WOUND-RESPONSIVE 3)	Wound-responsive gene 3 (WR3). Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction.	O.I.	C.G.	H.G.
32.6	99.7	89.3	At1g04220	839578	KCS2 (3-KETOACYL-COA SYNTHASE 2)	Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
31.5	99.7	12.3	At1g17950	838374	MYB52 (MYB DOMAIN PROTEIN 52)	putative transcription factor: R2R3-MYB transcription family	O.I.	C.G.	H.G.
30.9	99.7	41.8	At1g26240	839165	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
30.0	99.7	101.0	At2g44010	819006	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
29.3	99.7	277.5	At1g78000	844135	SULTR1	Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes.	O.I.	C.G.	H.G.
29.1	99.7	68.8	At2g29750	817525	UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1)	F:quercetin 3'-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF	O.I.	C.G.	H.G.
29.0	99.7	58.7	At3g11430	820316	GPAT5 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 5)	Encodes a protein with glycerol-3-phosphate acyltransferase activity, involved in the biosynthesis of suberin polyester.	O.I.	C.G.	H.G.
28.8	99.7	25.3	At2g28960	817445	leucine-rich repeat protein kinase, putative	F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
28.7	99.7	47.4	At5g59680	836089	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
28.7	99.7	27.4	At1g80450	844384	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
28.4	99.7	29.7	At4g15740	827252	C2 domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
27.7	99.7	20.6	At4g29800	829102	PLP8 (PATATIN-LIKE PROTEIN 8)	F:unknown;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOFM	O.I.	C.G.	H.G.
27.6	99.7	77.7	At5g12420	831117	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF	O.I.	C.G.	H.G.
27.0	99.7	82.5	At3g03670	821193	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOB	O.I.	C.G.	H.G.
26.4	99.7	122.7	At2g29995	817550	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
26.3	99.7	38.0	At3g15300	820761	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
26.1	99.7	16.3	At5g19700	832090	MATE efflux protein-related	F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
26.0	99.7	81.9	At5g25890	832658	IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)	encodes a protein that may be a negative regulator of lateral root formation in response to auxin. It is a member of IAA/ARF gene family and is plant-specific. Gain of function mutations in this gene suppresses lateral root formation and is resistant to inhibition of root elongation by auxin, cytokinin, and ethylene.	O.I.	C.G.	H.G.
25.8	99.7	14.3	At4g18630	827597	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOF	O.I.	C.G.	H.G.
25.6	99.7	344.4	At2g01520	814681	MLP328 (MLP-LIKE PROTEIN 328)	F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
25.3	99.6	260.7	At2g21045	816639	-	F:unknown;P:aging;C:unknown;BOPAFM	O.I.	C.G.	H.G.
25.2	99.6	31.4	At3g31415	822906	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
25.0	99.6	70.3	At2g40900	818687	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;BOPAM	O.I.	C.G.	H.G.
24.8	99.6	62.8	At1g60680	842362	aldo/keto reductase family protein	F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOMFPA	O.I.	C.G.	H.G.
24.8	99.6	15.8	At4g33710	829513	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFBO	O.I.	C.G.	H.G.
24.7	99.6	42.6	At1g01190	839233	CYP78A8	member of CYP78A	O.I.	C.G.	H.G.
24.4	99.6	23.1	At2g28850	817434	CYP710A3 (cytochrome P450, family 710, subfamily A, polypeptide 3)	member of CYP710A	O.I.	C.G.	H.G.
24.3	99.6	133.4	At4g07820	826263	pathogenesis-related protein, putative	F:molecular_function unknown;P:unknown;C:endomembrane system, extracellular region;PMFBO	O.I.	C.G.	H.G.
24.1	99.6	43.7	At1g31885	840079	transporter	F:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAV	O.I.	C.G.	H.G.
24.1	99.6	23.8	At4g25090	828612	respiratory burst oxidase, putative / NADPH oxidase, putative	F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA	O.I.	C.G.	H.G.
24.0	99.6	41.9	At4g35380	829691	guanine nucleotide exchange family protein	F:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPBA	O.I.	C.G.	H.G.
24.0	99.6	31.9	At2g16760	816177	-	F:molecular_function unknown;P:unknown;C:endoplasmic reticulum;PBO	O.I.	C.G.	H.G.
23.8	99.6	92.6	At1g14730	838038	-	F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOF	O.I.	C.G.	H.G.
23.6	99.6	21.1	At3g46270	823772	receptor protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPBOFVA	O.I.	C.G.	H.G.
23.5	99.6	14.5	At4g11230	826725	respiratory burst oxidase, putative / NADPH oxidase, putative	F:in 6 functions;P:oxidation reduction;C:integral to membrane, membrane;MFPBOA	O.I.	C.G.	H.G.
23.0	99.6	78.8	At3g21510	821705	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	O.I.	C.G.	H.G.
22.6	99.6	25.2	At1g52820	841715	2-oxoglutarate-dependent dioxygenase, putative	F:oxidoreductase activity;P:unknown;C:unknown;POBFM	O.I.	C.G.	H.G.
22.4	99.6	150.4	At5g22630	832326	ADT5 (arogenate dehydratase 5)	Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identiﬁed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-MEXP-828-raw-cel-1156922438
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-828-raw-cel-1156922438 GSE experiment -

GSM ID -

Assay name E-MEXP-828-raw-cel-1156922438

GSE experiment -