CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-791-raw-cel-1122937578

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
271.4 100.0 123.2 At3g26460 822251 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
163.7 99.9 67.8 At1g52820 841715 2-oxoglutarate-dependent dioxygenase, putative F:oxidoreductase activity;P:unknown;C:unknown;POBFM O.I. C.G. H.G.
149.3 99.9 78.1 At3g45070 823642 sulfotransferase family protein F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MOPBF O.I. C.G. H.G.
145.9 99.9 52.7 At2g42250 818826 CYP712A1 member of CYP712A O.I. C.G. H.G.
88.0 99.9 159.2 At5g38020 833781 S-adenosyl-L-methionine:carboxyl methyltransferase family protein encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) O.I. C.G. H.G.
79.0 99.9 37.7 At3g28320 822460 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
78.9 99.9 62.8 At4g14060 827042 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
55.9 99.8 27.7 At5g36140 833611 CYP716A2 member of CYP716A O.I. C.G. H.G.
51.7 99.8 34.4 At3g45680 823710 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport, response to nematode;C:membrane;PBMOF O.I. C.G. H.G.
47.6 99.8 52.1 At2g36120 3768574 DOT1 (DEFECTIVELY ORGANIZED TRIBUTARIES 1) Encodes a glycine rich protein that is involved in leaf vascular patterning. dot1 mutants have an aberrant open-class venation pattern in leaves and cotyledons, as well as several other leaf development defects. O.I. C.G. H.G.
41.7 99.8 71.7 At4g28940 829015 catalytic F:catalytic activity;P:nucleoside metabolic process;C:endomembrane system;BPO O.I. C.G. H.G.
40.9 99.8 21.7 At3g28310 822458 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
40.9 99.8 18.4 At1g73300 843664 scpl2 (serine carboxypeptidase-like 2) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO O.I. C.G. H.G.
39.2 99.8 23.3 At1g78990 844239 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
36.3 99.7 15.4 At3g62740 825449 BGLU7 (BETA GLUCOSIDASE 7) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
36.0 99.7 55.8 At5g63590 836478 FLS3 (FLAVONOL SYNTHASE 3) F:flavonol synthase activity;P:response to light stimulus, response to sucrose stimulus, flavonoid biosynthetic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
35.5 99.7 126.3 At4g11190 826721 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
34.5 99.7 6.5 At1g80320 844372 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
31.7 99.7 38.8 At4g13420 826973 HAK5 (HIGH AFFINITY K+ TRANSPORTER 5) Encodes a protein of the KUP/HAK/KT potassium channel class that is upregulated in the roots by K levels. O.I. C.G. H.G.
31.2 99.7 94.0 At2g48130 819425 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;PBOM O.I. C.G. H.G.
30.2 99.7 39.2 At1g66800 842998 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase O.I. C.G. H.G.
29.4 99.7 156.6 At3g62040 825377 catalytic/ hydrolase F:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFA O.I. C.G. H.G.
28.3 99.7 30.0 At3g26330 822237 CYP71B37 putative cytochrome P450 O.I. C.G. H.G.
27.2 99.7 149.2 At3g58550 825024 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P O.I. C.G. H.G.
27.1 99.7 19.7 At4g03610 825661 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPFA O.I. C.G. H.G.
26.4 99.7 130.1 At5g48000 834851 CYP708A2 Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation. O.I. C.G. H.G.
25.8 99.7 87.2 At5g37990 833778 S-adenosylmethionine-dependent methyltransferase/ methyltransferase F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF O.I. C.G. H.G.
25.2 99.6 53.6 At5g19600 832080 SULTR3 Encodes sulfate transporter Sultr3;5. O.I. C.G. H.G.
24.4 99.6 139.5 At2g18370 816352 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
24.3 99.6 91.6 At4g19030 827641 NLM1 an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance. O.I. C.G. H.G.
24.2 99.6 97.4 At1g17190 838290 ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
24.0 99.6 29.7 At3g49840 824146 unknown protein F:unknown;P:unknown;C:endomembrane system;PBM O.I. C.G. H.G.
23.9 99.6 119.0 At2g23540 816886 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
23.2 99.6 77.2 At3g06390 819813 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
22.4 99.6 96.5 At1g74460 843787 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
21.9 99.6 179.9 At1g17170 838288 ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
21.7 99.6 32.2 At1g11080 837649 scpl31 (serine carboxypeptidase-like 31) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
21.2 99.6 78.6 At2g48140 819426 EDA4 (embryo sac development arrest 4) F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFV O.I. C.G. H.G.
21.2 99.6 35.7 At1g14220 837983 ribonuclease T2 family protein F:ribonuclease T2 activity, endoribonuclease activity, RNA binding;P:N-terminal protein myristoylation;C:endomembrane system;PBFMOV O.I. C.G. H.G.
20.9 99.6 54.7 At3g28550 822485 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVA O.I. C.G. H.G.
20.8 99.6 53.1 At5g38030 833782 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAM O.I. C.G. H.G.
20.6 99.6 55.4 At5g63560 836475 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
20.3 99.6 27.1 At1g49960 841419 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV O.I. C.G. H.G.
20.0 99.6 83.7 At2g25810 817123 TIP4 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFA O.I. C.G. H.G.
19.9 99.6 61.8 At2g22510 816784 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMBVFA O.I. C.G. H.G.
19.9 99.6 24.4 At1g35250 840414 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPA O.I. C.G. H.G.
19.7 99.6 132.7 At1g14960 838061 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
19.6 99.6 108.8 At4g13660 827000 PRR2 (PINORESINOL REDUCTASE 2) Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows preference for pinoresinol and not lariciresinol. O.I. C.G. H.G.
19.2 99.6 21.9 At5g37950 833774 transferase, transferring hexosyl groups F:transferase activity, transferring hexosyl groups;P:metabolic process;C:unknown;PMVFOB O.I. C.G. H.G.
19.1 99.6 72.1 At3g29410 822602 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PO O.I. C.G. H.G.
19.0 99.5 40.7 At4g11210 826723 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
19.0 99.5 18.7 At4g11880 826795 AGL14 (agamous-like 14) AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots. O.I. C.G. H.G.
18.9 99.5 22.8 At5g49350 3771473 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
18.7 99.5 27.5 At2g47200 819333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
18.6 99.5 84.2 At4g29270 829048 acid phosphatase class B family protein F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBO O.I. C.G. H.G.
18.6 99.5 21.8 At5g37940 833773 NADP-dependent oxidoreductase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress;C:unknown;BOMFPA O.I. C.G. H.G.
18.5 99.5 126.0 At1g18980 838479 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO O.I. C.G. H.G.
17.7 99.5 115.5 At1g67330 843054 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB O.I. C.G. H.G.
17.6 99.5 217.8 At2g05440 815093 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA O.I. C.G. H.G.
17.5 99.5 74.5 At2g41380 818736 embryo-abundant protein-related F:methyltransferase activity;P:response to cadmium ion;C:mitochondrion;BPFOMA O.I. C.G. H.G.
17.3 99.5 97.6 At1g16300 838199 GAPCP-2 F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity;P:glycolysis, glucose metabolic process, metabolic process;C:plastid;BOPFMA O.I. C.G. H.G.
17.3 99.5 15.0 At1g77520 844088 O-methyltransferase family 2 protein F:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOM O.I. C.G. H.G.
17.1 99.5 12.5 At5g36110 833607 CYP716A1 member of CYP716A O.I. C.G. H.G.
17.1 99.5 9.5 At2g22920 816823 serine carboxypeptidase S10 family protein F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFBO O.I. C.G. H.G.
17.0 99.5 69.1 At5g63660 836486 PDF2.5 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
17.0 99.5 55.2 At1g62800 842579 ASP4 (ASPARTATE AMINOTRANSFERASE 4) Encodes aspartate aminotransferase (Asp4). O.I. C.G. H.G.
16.9 99.5 18.3 At3g18400 821369 anac058 (Arabidopsis NAC domain containing protein 58) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO O.I. C.G. H.G.
16.7 99.5 70.2 At3g25930 822190 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P O.I. C.G. H.G.
16.5 99.5 107.3 At3g05020 819664 ACP1 (acyl carrier protein 1) encodes an acyl carrier protein expressed in leaves, roots, and dry seeds. Protein is not regulated by light. O.I. C.G. H.G.
16.5 99.5 27.7 At1g70170 843353 MMP (MATRIX METALLOPROTEINASE) mutant has Late flowering; Early senescence; Matrix Metalloproteinase O.I. C.G. H.G.
16.4 99.5 33.1 At5g10210 830885 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.4 99.5 25.7 At1g35260 840415 MLP165 (MLP-LIKE PROTEIN 165) F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
16.2 99.5 96.8 At1g22440 838850 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV O.I. C.G. H.G.
16.1 99.5 93.5 At5g48010 834852 THAS1 (THALIANOL SYNTHASE 1) Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism. O.I. C.G. H.G.
15.9 99.5 153.7 At3g54590 824624 ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN) Encodes a hydroxyproline-rich glycoprotein. O.I. C.G. H.G.
15.9 99.5 69.0 At5g58860 836003 CYP86A1 (CYTOCHROME P450 86 A1) Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue. O.I. C.G. H.G.
15.7 99.5 97.8 At4g36430 829795 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to other organism;C:cell wall;PFOBM O.I. C.G. H.G.
15.7 99.5 97.8 At5g65210 836646 TGA1 F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POM O.I. C.G. H.G.
15.6 99.5 21.7 At5g37980 833777 NADP-dependent oxidoreductase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress, response to cyclopentenone;C:unknown;BOMFPA O.I. C.G. H.G.
15.5 99.5 111.8 At3g25190 822112 nodulin, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA O.I. C.G. H.G.
15.5 99.5 30.5 At4g08690 826436 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein F:transporter activity;P:transport;C:unknown;MPFO O.I. C.G. H.G.
15.3 99.4 315.5 At4g11650 826770 ATOSM34 (osmotin 34) osmotin-like protein O.I. C.G. H.G.
15.3 99.4 42.4 At1g68850 843218 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
15.2 99.4 13.8 At1g55940 842045 CYP708A1 member of CYP708A O.I. C.G. H.G.
15.0 99.4 18.5 At1g24430 839059 transferase/ transferase, transferring acyl groups other than amino-acyl groups F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PF O.I. C.G. H.G.
14.9 99.4 32.4 At3g48920 824053 AtMYB45 (myb domain protein 45) Member of the R2R3 factor gene family. O.I. C.G. H.G.
14.9 99.4 20.3 At3g22800 821851 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
14.9 99.4 11.6 At3g59340 825103 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPA O.I. C.G. H.G.
14.7 99.4 21.2 At1g70990 843438 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOBFVA O.I. C.G. H.G.
14.6 99.4 57.6 At3g26470 822252 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.4 99.4 333.1 At4g37410 829895 CYP81F4 member of CYP81F O.I. C.G. H.G.
14.4 99.4 104.1 At5g04740 830352 ACT domain-containing protein F:amino acid binding;P:metabolic process;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;POB O.I. C.G. H.G.
14.3 99.4 178.5 At3g22620 821833 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:chloroplast envelope;POBMFV O.I. C.G. H.G.
14.3 99.4 120.8 At5g47990 834850 CYP705A5 encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings. O.I. C.G. H.G.
14.3 99.4 55.9 At5g12420 831117 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF O.I. C.G. H.G.
14.3 99.4 25.3 At5g06330 830521 hairpin-responsive protein, putative (HIN1) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.3 99.4 22.8 At2g13810 815864 ALD1 (AGD2-LIKE DEFENSE RESPONSE PROTEIN1) F:transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity;P:asparagine catabolic process, biosynthetic process, glutamate catabolic process to oxaloacetate, aspartate transamidation;C:chloroplast;BOAPMF O.I. C.G. H.G.
14.2 99.4 69.5 At2g30210 817571 LAC3 (laccase 3) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). O.I. C.G. H.G.
14.2 99.4 32.4 At2g35380 818105 peroxidase 20 (PER20) (P20) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
14.0 99.4 21.6 At1g29160 839790 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
271.4	100.0	123.2	At3g26460	822251	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
163.7	99.9	67.8	At1g52820	841715	2-oxoglutarate-dependent dioxygenase, putative	F:oxidoreductase activity;P:unknown;C:unknown;POBFM	O.I.	C.G.	H.G.
149.3	99.9	78.1	At3g45070	823642	sulfotransferase family protein	F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MOPBF	O.I.	C.G.	H.G.
145.9	99.9	52.7	At2g42250	818826	CYP712A1	member of CYP712A	O.I.	C.G.	H.G.
88.0	99.9	159.2	At5g38020	833781	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)	O.I.	C.G.	H.G.
79.0	99.9	37.7	At3g28320	822460	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
78.9	99.9	62.8	At4g14060	827042	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
55.9	99.8	27.7	At5g36140	833611	CYP716A2	member of CYP716A	O.I.	C.G.	H.G.
51.7	99.8	34.4	At3g45680	823710	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport, response to nematode;C:membrane;PBMOF	O.I.	C.G.	H.G.
47.6	99.8	52.1	At2g36120	3768574	DOT1 (DEFECTIVELY ORGANIZED TRIBUTARIES 1)	Encodes a glycine rich protein that is involved in leaf vascular patterning. dot1 mutants have an aberrant open-class venation pattern in leaves and cotyledons, as well as several other leaf development defects.	O.I.	C.G.	H.G.
41.7	99.8	71.7	At4g28940	829015	catalytic	F:catalytic activity;P:nucleoside metabolic process;C:endomembrane system;BPO	O.I.	C.G.	H.G.
40.9	99.8	21.7	At3g28310	822458	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
40.9	99.8	18.4	At1g73300	843664	scpl2 (serine carboxypeptidase-like 2)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
39.2	99.8	23.3	At1g78990	844239	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
36.3	99.7	15.4	At3g62740	825449	BGLU7 (BETA GLUCOSIDASE 7)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
36.0	99.7	55.8	At5g63590	836478	FLS3 (FLAVONOL SYNTHASE 3)	F:flavonol synthase activity;P:response to light stimulus, response to sucrose stimulus, flavonoid biosynthetic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
35.5	99.7	126.3	At4g11190	826721	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
34.5	99.7	6.5	At1g80320	844372	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
31.7	99.7	38.8	At4g13420	826973	HAK5 (HIGH AFFINITY K+ TRANSPORTER 5)	Encodes a protein of the KUP/HAK/KT potassium channel class that is upregulated in the roots by K levels.	O.I.	C.G.	H.G.
31.2	99.7	94.0	At2g48130	819425	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;PBOM	O.I.	C.G.	H.G.
30.2	99.7	39.2	At1g66800	842998	cinnamyl-alcohol dehydrogenase family / CAD family	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase	O.I.	C.G.	H.G.
29.4	99.7	156.6	At3g62040	825377	catalytic/ hydrolase	F:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFA	O.I.	C.G.	H.G.
28.3	99.7	30.0	At3g26330	822237	CYP71B37	putative cytochrome P450	O.I.	C.G.	H.G.
27.2	99.7	149.2	At3g58550	825024	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;P	O.I.	C.G.	H.G.
27.1	99.7	19.7	At4g03610	825661	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPFA	O.I.	C.G.	H.G.
26.4	99.7	130.1	At5g48000	834851	CYP708A2	Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.	O.I.	C.G.	H.G.
25.8	99.7	87.2	At5g37990	833778	S-adenosylmethionine-dependent methyltransferase/ methyltransferase	F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF	O.I.	C.G.	H.G.
25.2	99.6	53.6	At5g19600	832080	SULTR3	Encodes sulfate transporter Sultr3;5.	O.I.	C.G.	H.G.
24.4	99.6	139.5	At2g18370	816352	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
24.3	99.6	91.6	At4g19030	827641	NLM1	an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance.	O.I.	C.G.	H.G.
24.2	99.6	97.4	At1g17190	838290	ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
24.0	99.6	29.7	At3g49840	824146	unknown protein	F:unknown;P:unknown;C:endomembrane system;PBM	O.I.	C.G.	H.G.
23.9	99.6	119.0	At2g23540	816886	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
23.2	99.6	77.2	At3g06390	819813	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.4	99.6	96.5	At1g74460	843787	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
21.9	99.6	179.9	At1g17170	838288	ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
21.7	99.6	32.2	At1g11080	837649	scpl31 (serine carboxypeptidase-like 31)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
21.2	99.6	78.6	At2g48140	819426	EDA4 (embryo sac development arrest 4)	F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFV	O.I.	C.G.	H.G.
21.2	99.6	35.7	At1g14220	837983	ribonuclease T2 family protein	F:ribonuclease T2 activity, endoribonuclease activity, RNA binding;P:N-terminal protein myristoylation;C:endomembrane system;PBFMOV	O.I.	C.G.	H.G.
20.9	99.6	54.7	At3g28550	822485	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVA	O.I.	C.G.	H.G.
20.8	99.6	53.1	At5g38030	833782	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAM	O.I.	C.G.	H.G.
20.6	99.6	55.4	At5g63560	836475	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
20.3	99.6	27.1	At1g49960	841419	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV	O.I.	C.G.	H.G.
20.0	99.6	83.7	At2g25810	817123	TIP4	F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFA	O.I.	C.G.	H.G.
19.9	99.6	61.8	At2g22510	816784	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMBVFA	O.I.	C.G.	H.G.
19.9	99.6	24.4	At1g35250	840414	thioesterase family protein	F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPA	O.I.	C.G.	H.G.
19.7	99.6	132.7	At1g14960	838061	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.6	99.6	108.8	At4g13660	827000	PRR2 (PINORESINOL REDUCTASE 2)	Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows preference for pinoresinol and not lariciresinol.	O.I.	C.G.	H.G.
19.2	99.6	21.9	At5g37950	833774	transferase, transferring hexosyl groups	F:transferase activity, transferring hexosyl groups;P:metabolic process;C:unknown;PMVFOB	O.I.	C.G.	H.G.
19.1	99.6	72.1	At3g29410	822602	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PO	O.I.	C.G.	H.G.
19.0	99.5	40.7	At4g11210	826723	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
19.0	99.5	18.7	At4g11880	826795	AGL14 (agamous-like 14)	AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.	O.I.	C.G.	H.G.
18.9	99.5	22.8	At5g49350	3771473	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
18.7	99.5	27.5	At2g47200	819333	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.6	99.5	84.2	At4g29270	829048	acid phosphatase class B family protein	F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBO	O.I.	C.G.	H.G.
18.6	99.5	21.8	At5g37940	833773	NADP-dependent oxidoreductase, putative	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress;C:unknown;BOMFPA	O.I.	C.G.	H.G.
18.5	99.5	126.0	At1g18980	838479	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFO	O.I.	C.G.	H.G.
17.7	99.5	115.5	At1g67330	843054	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB	O.I.	C.G.	H.G.
17.6	99.5	217.8	At2g05440	815093	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA	O.I.	C.G.	H.G.
17.5	99.5	74.5	At2g41380	818736	embryo-abundant protein-related	F:methyltransferase activity;P:response to cadmium ion;C:mitochondrion;BPFOMA	O.I.	C.G.	H.G.
17.3	99.5	97.6	At1g16300	838199	GAPCP-2	F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity;P:glycolysis, glucose metabolic process, metabolic process;C:plastid;BOPFMA	O.I.	C.G.	H.G.
17.3	99.5	15.0	At1g77520	844088	O-methyltransferase family 2 protein	F:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOM	O.I.	C.G.	H.G.
17.1	99.5	12.5	At5g36110	833607	CYP716A1	member of CYP716A	O.I.	C.G.	H.G.
17.1	99.5	9.5	At2g22920	816823	serine carboxypeptidase S10 family protein	F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFBO	O.I.	C.G.	H.G.
17.0	99.5	69.1	At5g63660	836486	PDF2.5	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
17.0	99.5	55.2	At1g62800	842579	ASP4 (ASPARTATE AMINOTRANSFERASE 4)	Encodes aspartate aminotransferase (Asp4).	O.I.	C.G.	H.G.
16.9	99.5	18.3	At3g18400	821369	anac058 (Arabidopsis NAC domain containing protein 58)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
16.7	99.5	70.2	At3g25930	822190	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.5	99.5	107.3	At3g05020	819664	ACP1 (acyl carrier protein 1)	encodes an acyl carrier protein expressed in leaves, roots, and dry seeds. Protein is not regulated by light.	O.I.	C.G.	H.G.
16.5	99.5	27.7	At1g70170	843353	MMP (MATRIX METALLOPROTEINASE)	mutant has Late flowering; Early senescence; Matrix Metalloproteinase	O.I.	C.G.	H.G.
16.4	99.5	33.1	At5g10210	830885	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.4	99.5	25.7	At1g35260	840415	MLP165 (MLP-LIKE PROTEIN 165)	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.2	99.5	96.8	At1g22440	838850	alcohol dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV	O.I.	C.G.	H.G.
16.1	99.5	93.5	At5g48010	834852	THAS1 (THALIANOL SYNTHASE 1)	Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism.	O.I.	C.G.	H.G.
15.9	99.5	153.7	At3g54590	824624	ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN)	Encodes a hydroxyproline-rich glycoprotein.	O.I.	C.G.	H.G.
15.9	99.5	69.0	At5g58860	836003	CYP86A1 (CYTOCHROME P450 86 A1)	Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue.	O.I.	C.G.	H.G.
15.7	99.5	97.8	At4g36430	829795	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to other organism;C:cell wall;PFOBM	O.I.	C.G.	H.G.
15.7	99.5	97.8	At5g65210	836646	TGA1	F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POM	O.I.	C.G.	H.G.
15.6	99.5	21.7	At5g37980	833777	NADP-dependent oxidoreductase, putative	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress, response to cyclopentenone;C:unknown;BOMFPA	O.I.	C.G.	H.G.
15.5	99.5	111.8	At3g25190	822112	nodulin, putative	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA	O.I.	C.G.	H.G.
15.5	99.5	30.5	At4g08690	826436	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	F:transporter activity;P:transport;C:unknown;MPFO	O.I.	C.G.	H.G.
15.3	99.4	315.5	At4g11650	826770	ATOSM34 (osmotin 34)	osmotin-like protein	O.I.	C.G.	H.G.
15.3	99.4	42.4	At1g68850	843218	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
15.2	99.4	13.8	At1g55940	842045	CYP708A1	member of CYP708A	O.I.	C.G.	H.G.
15.0	99.4	18.5	At1g24430	839059	transferase/ transferase, transferring acyl groups other than amino-acyl groups	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
14.9	99.4	32.4	At3g48920	824053	AtMYB45 (myb domain protein 45)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
14.9	99.4	20.3	At3g22800	821851	leucine-rich repeat family protein / extensin family protein	F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
14.9	99.4	11.6	At3g59340	825103	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPA	O.I.	C.G.	H.G.
14.7	99.4	21.2	At1g70990	843438	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOBFVA	O.I.	C.G.	H.G.
14.6	99.4	57.6	At3g26470	822252	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.4	99.4	333.1	At4g37410	829895	CYP81F4	member of CYP81F	O.I.	C.G.	H.G.
14.4	99.4	104.1	At5g04740	830352	ACT domain-containing protein	F:amino acid binding;P:metabolic process;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;POB	O.I.	C.G.	H.G.
14.3	99.4	178.5	At3g22620	821833	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:chloroplast envelope;POBMFV	O.I.	C.G.	H.G.
14.3	99.4	120.8	At5g47990	834850	CYP705A5	encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings.	O.I.	C.G.	H.G.
14.3	99.4	55.9	At5g12420	831117	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF	O.I.	C.G.	H.G.
14.3	99.4	25.3	At5g06330	830521	hairpin-responsive protein, putative (HIN1)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.3	99.4	22.8	At2g13810	815864	ALD1 (AGD2-LIKE DEFENSE RESPONSE PROTEIN1)	F:transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity;P:asparagine catabolic process, biosynthetic process, glutamate catabolic process to oxaloacetate, aspartate transamidation;C:chloroplast;BOAPMF	O.I.	C.G.	H.G.
14.2	99.4	69.5	At2g30210	817571	LAC3 (laccase 3)	putative laccase, a member of laccase family of genes (17 members in Arabidopsis).	O.I.	C.G.	H.G.
14.2	99.4	32.4	At2g35380	818105	peroxidase 20 (PER20) (P20)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
14.0	99.4	21.6	At1g29160	839790	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PO	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-MEXP-791-raw-cel-1122937578
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-791-raw-cel-1122937578 GSE experiment -

GSM ID -

Assay name E-MEXP-791-raw-cel-1122937578

GSE experiment -