CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-791-raw-cel-1122937479

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
73.1 99.9 147.3 At5g20790 832202 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
42.8 99.8 127.4 At5g01220 831888 SQD2 (sulfoquinovosyldiacylglycerol 2) involved in sulfolipid biosynthesis O.I. C.G. H.G.
37.9 99.8 38.4 At1g19200 838503 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
37.0 99.7 36.5 At3g05630 819730 PLDP2 Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning. O.I. C.G. H.G.
35.7 99.7 18.7 At2g32830 817844 PHT5 phosphate transporter O.I. C.G. H.G.
35.2 99.7 184.8 At4g15210 827185 BAM5 (BETA-AMYLASE 5) cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems. O.I. C.G. H.G.
33.7 99.7 180.1 At3g02040 821175 SRG3 (senescence-related gene 3) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAV O.I. C.G. H.G.
31.0 99.7 21.9 At3g43110 823370 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
28.3 99.7 65.2 At2g45130 819120 SPX3 (SPX DOMAIN GENE 3) F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:cellular_component unknown;FMPO O.I. C.G. H.G.
27.1 99.7 169.6 At1g73010 843632 phosphatase F:phosphatase activity;P:metabolic process;C:cellular_component unknown;MPOBF O.I. C.G. H.G.
26.8 99.7 122.8 At3g47420 823896 glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative F:sugar:hydrogen symporter activity;P:carbohydrate transport;C:unknown;BFOMAP O.I. C.G. H.G.
26.5 99.7 33.7 At2g04460 814986 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
25.7 99.7 59.1 At1g13750 837935 calcineurin-like phosphoesterase family protein F:hydrolase activity, protein serine/threonine phosphatase activity, metal ion binding, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMF O.I. C.G. H.G.
23.3 99.6 198.2 At1g61800 842477 GPT2 glucose6-Phosphate/phosphate transporter 2 O.I. C.G. H.G.
22.5 99.6 219.0 At2g43535 818955 trypsin inhibitor, putative Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
21.5 99.6 37.3 At2g36970 818271 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMBVOF O.I. C.G. H.G.
21.2 99.6 273.4 At3g13110 820499 ATSERAT2 Encodes a mitochondrial serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. O.I. C.G. H.G.
21.2 99.6 232.1 At3g12500 820429 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. O.I. C.G. H.G.
20.9 99.6 196.8 At1g74090 843749 SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18) encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates. O.I. C.G. H.G.
20.4 99.6 18.7 At1g17830 838361 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
19.6 99.6 198.8 At3g17790 821047 PAP17 F:phosphatase activity, protein serine/threonine phosphatase activity, acid phosphatase activity;P:response to hydrogen peroxide, cellular phosphate ion homeostasis;C:cell surface;MOBPFA O.I. C.G. H.G.
19.3 99.6 128.1 At1g17710 838347 phosphatase F:phosphatase activity;P:metabolic process;C:unknown;MPOBF O.I. C.G. H.G.
19.2 99.6 52.7 At4g03960 825706 tyrosine specific protein phosphatase family protein F:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FPOBM O.I. C.G. H.G.
18.7 99.5 69.3 At2g04160 814953 AIR3 isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell. O.I. C.G. H.G.
16.6 99.5 237.3 At4g16260 827320 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;PO O.I. C.G. H.G.
15.9 99.5 321.7 At4g11650 826770 ATOSM34 (osmotin 34) osmotin-like protein O.I. C.G. H.G.
14.9 99.4 69.7 At4g19810 827725 glycosyl hydrolase family 18 protein F:cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall;BMFOVPA O.I. C.G. H.G.
14.7 99.4 109.6 At2g43100 818912 aconitase C-terminal domain-containing protein F:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOAFPM O.I. C.G. H.G.
14.7 99.4 88.9 At1g66690 842987 S-adenosyl-L-methionine:carboxyl methyltransferase family protein F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF O.I. C.G. H.G.
14.6 99.4 139.7 At4g01480 827962 AtPPa5 (Arabidopsis thaliana pyrophosphorylase 5) Encodes a protein that might have inorganic pyrophosphatase activity. O.I. C.G. H.G.
14.6 99.4 48.0 At2g46880 819301 PAP14 (PURPLE ACID PHOSPHATASE 14) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:endomembrane system;FBPO O.I. C.G. H.G.
14.3 99.4 201.7 At4g33720 829514 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
14.3 99.4 10.1 At5g09470 830806 mitochondrial substrate carrier family protein F:oxidative phosphorylation uncoupler activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOV O.I. C.G. H.G.
13.8 99.4 127.1 At1g80130 844353 binding F:binding;P:response to oxidative stress;C:membrane;BPOMFAV O.I. C.G. H.G.
13.6 99.4 30.2 At1g71130 843453 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
13.6 99.4 16.9 At1g62540 842551 FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2) belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates O.I. C.G. H.G.
13.4 99.4 193.1 At4g33030 829440 SQD1 involved in sulfolipid biosynthesis O.I. C.G. H.G.
12.9 99.3 214.3 At1g53310 841765 ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1) Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins. O.I. C.G. H.G.
12.9 99.3 68.9 At5g61510 836272 NADP-dependent oxidoreductase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:cell differentiation, response to high light intensity;C:unknown;BOFMPAV O.I. C.G. H.G.
12.8 99.3 260.8 At4g34200 829568 EDA9 (embryo sac development arrest 9) F:ATP binding;P:megagametogenesis;C:mitochondrion, chloroplast, membrane;BOFMPAV O.I. C.G. H.G.
12.5 99.3 139.0 At5g23020 832366 IMS2 (2-ISOPROPYLMALATE SYNTHASE 2) methylthioalkymalate synthase-like. Also known as 2-isopropylmalate synthase (IMS2). encodes a methylthioalkylmalate synthase involved in the biosynthesis of aliphatic glucosinolates which accepts all the omega-methylthio-2-oxoalkanoic acids needed to form the known C3 to C8 glucosinolates in Arabidopsis. O.I. C.G. H.G.
12.5 99.3 110.8 At3g58990 825068 aconitase C-terminal domain-containing protein F:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOFAPM O.I. C.G. H.G.
12.4 99.3 19.9 At1g22170 838822 phosphoglycerate/bisphosphoglycerate mutase family protein F:intramolecular transferase activity, phosphotransferases, catalytic activity;P:glycolysis, metabolic process;C:chloroplast;BOMFPA O.I. C.G. H.G.
12.3 99.3 33.5 At3g01930 821218 nodulin family protein F:unknown;P:unknown;C:unknown;BPOFMA O.I. C.G. H.G.
12.2 99.3 26.1 At2g07695 815371 cytochrome c oxidase subunit II, putative F:electron carrier activity, cytochrome-c oxidase activity, copper ion binding, heme binding;P:electron transport chain, respiratory electron transport chain;C:integral to membrane, membrane;MOFBP O.I. C.G. H.G.
11.7 99.3 183.9 At2g43590 818961 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV O.I. C.G. H.G.
11.5 99.3 38.8 At3g56040 824770 UGP3 (UDP-GLUCOSE PYROPHOSPHORYLASE 3) F:unknown;P:biological_process unknown;C:chloroplast;PFOMB O.I. C.G. H.G.
11.5 99.3 23.3 At2g30540 817603 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO O.I. C.G. H.G.
11.1 99.2 13.4 At3g44510 823576 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
11.0 99.2 82.4 At1g76930 844028 ATEXT4 (EXTENSIN 4) Encodes an Arabidopsis extensin gene that belongs to cell-wall hydroxyproline-rich glycoproteins. The cross-link of extensins enforces cell wall strength. Transgenic plants overexpressing this gene show an increase in stem thickness. O.I. C.G. H.G.
10.9 99.2 30.3 At1g23140 838922 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPFO O.I. C.G. H.G.
10.7 99.2 416.7 At1g35720 840476 ANNAT1 (ANNEXIN ARABIDOPSIS 1) Encodes a member of the annexin gene family, a diverse, multigene family of calcium-dependent, membrane-binding proteins. The protein was determined to have peroxidase activity. This activity is thought to be dependent on the presence of post-translational modifications (most likely phosphorylation). The protein was shown to be present as a mixture of monomer and homodimer. The homodimerization seems to be dependent on the presence of Ca2+ or H2O2. The dimerization was prevented by the addition of DTT, β-mercaptoethanol and TCEP. Annat1 mRNA is expressed in flowers, roots,leaves and stems and is most abundant in stems. mRNA levels are increased in response to oxidative stress. Developmental expression patterns suggest a role in Golgi-mediated polysaccharide secretion. O.I. C.G. H.G.
10.5 99.2 67.9 At4g12390 826848 PME1 (PECTIN METHYLESTERASE INHIBITOR 1) F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
9.8 99.1 317.0 At3g04720 819632 PR4 (PATHOGENESIS-RELATED 4) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. O.I. C.G. H.G.
9.8 99.1 95.2 At5g66690 836802 UGT72E2 UGT72E2 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl aldehydes as well as sinapyl- and coniferyl alcohol. The enzyme is thought to be involved in lignin metabolism. A knockdown mutant line (72E2KD) was obtained using RNAi silencing. A twofold reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype. In comparison, both knockout and knockdown lines of UGT72E1 and UGT72E3, respectively, failed to display the same reduction in phenylpropanoid 4-O-glucosides. O.I. C.G. H.G.
9.7 99.1 20.1 At1g68740 843205 EXS family protein / ERD1/XPR1/SYG1 family protein Encodes PHO1;H1, a member of the PHO1 family. Involved in inorganic phosphate (Pi) transport and homeostasis. Complements pho1 mutation. O.I. C.G. H.G.
9.6 99.1 91.8 At3g22850 821857 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;BPOM O.I. C.G. H.G.
9.6 99.1 20.2 At1g67600 843081 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOP O.I. C.G. H.G.
9.5 99.1 153.2 At5g43350 834353 PHT1 Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation. O.I. C.G. H.G.
9.4 99.1 30.5 At5g36940 833664 CAT3 (CATIONIC AMINO ACID TRANSPORTER 3) Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. O.I. C.G. H.G.
9.0 99.1 28.3 At4g39210 830076 APL3 Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL3 is the major large subunit isoform present in inflorescences, fruits and roots. O.I. C.G. H.G.
8.9 99.0 181.4 At1g50480 841470 THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE) 10-formyltetrahydrofolate synthetase (THFS) mRNA, complete O.I. C.G. H.G.
8.9 99.0 115.4 At1g69870 843323 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:response to salt stress, oligopeptide transport;C:plasma membrane, membrane;PBMFO O.I. C.G. H.G.
8.9 99.0 82.0 At1g67330 843054 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB O.I. C.G. H.G.
8.8 99.0 170.1 At4g12480 826860 pEARLI 1 a putative lipid transfer protein, vernalization-responsive and cold-induced O.I. C.G. H.G.
8.7 99.0 27.1 At1g48370 841257 YSL8 (YELLOW STRIPE LIKE 8) Arabidopsis thaliana metal-nicotianamine transporter YSL4 O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
73.1	99.9	147.3	At5g20790	832202	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
42.8	99.8	127.4	At5g01220	831888	SQD2 (sulfoquinovosyldiacylglycerol 2)	involved in sulfolipid biosynthesis	O.I.	C.G.	H.G.
37.9	99.8	38.4	At1g19200	838503	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
37.0	99.7	36.5	At3g05630	819730	PLDP2	Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning.	O.I.	C.G.	H.G.
35.7	99.7	18.7	At2g32830	817844	PHT5	phosphate transporter	O.I.	C.G.	H.G.
35.2	99.7	184.8	At4g15210	827185	BAM5 (BETA-AMYLASE 5)	cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.	O.I.	C.G.	H.G.
33.7	99.7	180.1	At3g02040	821175	SRG3 (senescence-related gene 3)	F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAV	O.I.	C.G.	H.G.
31.0	99.7	21.9	At3g43110	823370	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
28.3	99.7	65.2	At2g45130	819120	SPX3 (SPX DOMAIN GENE 3)	F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:cellular_component unknown;FMPO	O.I.	C.G.	H.G.
27.1	99.7	169.6	At1g73010	843632	phosphatase	F:phosphatase activity;P:metabolic process;C:cellular_component unknown;MPOBF	O.I.	C.G.	H.G.
26.8	99.7	122.8	At3g47420	823896	glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative	F:sugar:hydrogen symporter activity;P:carbohydrate transport;C:unknown;BFOMAP	O.I.	C.G.	H.G.
26.5	99.7	33.7	At2g04460	814986	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
25.7	99.7	59.1	At1g13750	837935	calcineurin-like phosphoesterase family protein	F:hydrolase activity, protein serine/threonine phosphatase activity, metal ion binding, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMF	O.I.	C.G.	H.G.
23.3	99.6	198.2	At1g61800	842477	GPT2	glucose6-Phosphate/phosphate transporter 2	O.I.	C.G.	H.G.
22.5	99.6	219.0	At2g43535	818955	trypsin inhibitor, putative	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
21.5	99.6	37.3	At2g36970	818271	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMBVOF	O.I.	C.G.	H.G.
21.2	99.6	273.4	At3g13110	820499	ATSERAT2	Encodes a mitochondrial serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system.	O.I.	C.G.	H.G.
21.2	99.6	232.1	At3g12500	820429	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.	O.I.	C.G.	H.G.
20.9	99.6	196.8	At1g74090	843749	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates.	O.I.	C.G.	H.G.
20.4	99.6	18.7	At1g17830	838361	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
19.6	99.6	198.8	At3g17790	821047	PAP17	F:phosphatase activity, protein serine/threonine phosphatase activity, acid phosphatase activity;P:response to hydrogen peroxide, cellular phosphate ion homeostasis;C:cell surface;MOBPFA	O.I.	C.G.	H.G.
19.3	99.6	128.1	At1g17710	838347	phosphatase	F:phosphatase activity;P:metabolic process;C:unknown;MPOBF	O.I.	C.G.	H.G.
19.2	99.6	52.7	At4g03960	825706	tyrosine specific protein phosphatase family protein	F:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FPOBM	O.I.	C.G.	H.G.
18.7	99.5	69.3	At2g04160	814953	AIR3	isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.	O.I.	C.G.	H.G.
16.6	99.5	237.3	At4g16260	827320	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to salt stress;C:cell wall, plasma membrane;PO	O.I.	C.G.	H.G.
15.9	99.5	321.7	At4g11650	826770	ATOSM34 (osmotin 34)	osmotin-like protein	O.I.	C.G.	H.G.
14.9	99.4	69.7	At4g19810	827725	glycosyl hydrolase family 18 protein	F:cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall;BMFOVPA	O.I.	C.G.	H.G.
14.7	99.4	109.6	At2g43100	818912	aconitase C-terminal domain-containing protein	F:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOAFPM	O.I.	C.G.	H.G.
14.7	99.4	88.9	At1g66690	842987	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF	O.I.	C.G.	H.G.
14.6	99.4	139.7	At4g01480	827962	AtPPa5 (Arabidopsis thaliana pyrophosphorylase 5)	Encodes a protein that might have inorganic pyrophosphatase activity.	O.I.	C.G.	H.G.
14.6	99.4	48.0	At2g46880	819301	PAP14 (PURPLE ACID PHOSPHATASE 14)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:endomembrane system;FBPO	O.I.	C.G.	H.G.
14.3	99.4	201.7	At4g33720	829514	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
14.3	99.4	10.1	At5g09470	830806	mitochondrial substrate carrier family protein	F:oxidative phosphorylation uncoupler activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOV	O.I.	C.G.	H.G.
13.8	99.4	127.1	At1g80130	844353	binding	F:binding;P:response to oxidative stress;C:membrane;BPOMFAV	O.I.	C.G.	H.G.
13.6	99.4	30.2	At1g71130	843453	AP2 domain-containing transcription factor, putative	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
13.6	99.4	16.9	At1g62540	842551	FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2)	belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates	O.I.	C.G.	H.G.
13.4	99.4	193.1	At4g33030	829440	SQD1	involved in sulfolipid biosynthesis	O.I.	C.G.	H.G.
12.9	99.3	214.3	At1g53310	841765	ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1)	Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.	O.I.	C.G.	H.G.
12.9	99.3	68.9	At5g61510	836272	NADP-dependent oxidoreductase, putative	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:cell differentiation, response to high light intensity;C:unknown;BOFMPAV	O.I.	C.G.	H.G.
12.8	99.3	260.8	At4g34200	829568	EDA9 (embryo sac development arrest 9)	F:ATP binding;P:megagametogenesis;C:mitochondrion, chloroplast, membrane;BOFMPAV	O.I.	C.G.	H.G.
12.5	99.3	139.0	At5g23020	832366	IMS2 (2-ISOPROPYLMALATE SYNTHASE 2)	methylthioalkymalate synthase-like. Also known as 2-isopropylmalate synthase (IMS2). encodes a methylthioalkylmalate synthase involved in the biosynthesis of aliphatic glucosinolates which accepts all the omega-methylthio-2-oxoalkanoic acids needed to form the known C3 to C8 glucosinolates in Arabidopsis.	O.I.	C.G.	H.G.
12.5	99.3	110.8	At3g58990	825068	aconitase C-terminal domain-containing protein	F:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOFAPM	O.I.	C.G.	H.G.
12.4	99.3	19.9	At1g22170	838822	phosphoglycerate/bisphosphoglycerate mutase family protein	F:intramolecular transferase activity, phosphotransferases, catalytic activity;P:glycolysis, metabolic process;C:chloroplast;BOMFPA	O.I.	C.G.	H.G.
12.3	99.3	33.5	At3g01930	821218	nodulin family protein	F:unknown;P:unknown;C:unknown;BPOFMA	O.I.	C.G.	H.G.
12.2	99.3	26.1	At2g07695	815371	cytochrome c oxidase subunit II, putative	F:electron carrier activity, cytochrome-c oxidase activity, copper ion binding, heme binding;P:electron transport chain, respiratory electron transport chain;C:integral to membrane, membrane;MOFBP	O.I.	C.G.	H.G.
11.7	99.3	183.9	At2g43590	818961	chitinase, putative	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBFOMV	O.I.	C.G.	H.G.
11.5	99.3	38.8	At3g56040	824770	UGP3 (UDP-GLUCOSE PYROPHOSPHORYLASE 3)	F:unknown;P:biological_process unknown;C:chloroplast;PFOMB	O.I.	C.G.	H.G.
11.5	99.3	23.3	At2g30540	817603	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
11.1	99.2	13.4	At3g44510	823576	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
11.0	99.2	82.4	At1g76930	844028	ATEXT4 (EXTENSIN 4)	Encodes an Arabidopsis extensin gene that belongs to cell-wall hydroxyproline-rich glycoproteins. The cross-link of extensins enforces cell wall strength. Transgenic plants overexpressing this gene show an increase in stem thickness.	O.I.	C.G.	H.G.
10.9	99.2	30.3	At1g23140	838922	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPFO	O.I.	C.G.	H.G.
10.7	99.2	416.7	At1g35720	840476	ANNAT1 (ANNEXIN ARABIDOPSIS 1)	Encodes a member of the annexin gene family, a diverse, multigene family of calcium-dependent, membrane-binding proteins. The protein was determined to have peroxidase activity. This activity is thought to be dependent on the presence of post-translational modifications (most likely phosphorylation). The protein was shown to be present as a mixture of monomer and homodimer. The homodimerization seems to be dependent on the presence of Ca2+ or H2O2. The dimerization was prevented by the addition of DTT, β-mercaptoethanol and TCEP. Annat1 mRNA is expressed in flowers, roots,leaves and stems and is most abundant in stems. mRNA levels are increased in response to oxidative stress. Developmental expression patterns suggest a role in Golgi-mediated polysaccharide secretion.	O.I.	C.G.	H.G.
10.5	99.2	67.9	At4g12390	826848	PME1 (PECTIN METHYLESTERASE INHIBITOR 1)	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
9.8	99.1	317.0	At3g04720	819632	PR4 (PATHOGENESIS-RELATED 4)	Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection.	O.I.	C.G.	H.G.
9.8	99.1	95.2	At5g66690	836802	UGT72E2	UGT72E2 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl aldehydes as well as sinapyl- and coniferyl alcohol. The enzyme is thought to be involved in lignin metabolism. A knockdown mutant line (72E2KD) was obtained using RNAi silencing. A twofold reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype. In comparison, both knockout and knockdown lines of UGT72E1 and UGT72E3, respectively, failed to display the same reduction in phenylpropanoid 4-O-glucosides.	O.I.	C.G.	H.G.
9.7	99.1	20.1	At1g68740	843205	EXS family protein / ERD1/XPR1/SYG1 family protein	Encodes PHO1;H1, a member of the PHO1 family. Involved in inorganic phosphate (Pi) transport and homeostasis. Complements pho1 mutation.	O.I.	C.G.	H.G.
9.6	99.1	91.8	At3g22850	821857	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;BPOM	O.I.	C.G.	H.G.
9.6	99.1	20.2	At1g67600	843081	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOP	O.I.	C.G.	H.G.
9.5	99.1	153.2	At5g43350	834353	PHT1	Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation.	O.I.	C.G.	H.G.
9.4	99.1	30.5	At5g36940	833664	CAT3 (CATIONIC AMINO ACID TRANSPORTER 3)	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs.	O.I.	C.G.	H.G.
9.0	99.1	28.3	At4g39210	830076	APL3	Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL3 is the major large subunit isoform present in inflorescences, fruits and roots.	O.I.	C.G.	H.G.
8.9	99.0	181.4	At1g50480	841470	THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE)	10-formyltetrahydrofolate synthetase (THFS) mRNA, complete	O.I.	C.G.	H.G.
8.9	99.0	115.4	At1g69870	843323	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:response to salt stress, oligopeptide transport;C:plasma membrane, membrane;PBMFO	O.I.	C.G.	H.G.
8.9	99.0	82.0	At1g67330	843054	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB	O.I.	C.G.	H.G.
8.8	99.0	170.1	At4g12480	826860	pEARLI 1	a putative lipid transfer protein, vernalization-responsive and cold-induced	O.I.	C.G.	H.G.
8.7	99.0	27.1	At1g48370	841257	YSL8 (YELLOW STRIPE LIKE 8)	Arabidopsis thaliana metal-nicotianamine transporter YSL4	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-MEXP-791-raw-cel-1122937479
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-791-raw-cel-1122937479 GSE experiment -

GSM ID -

Assay name E-MEXP-791-raw-cel-1122937479

GSE experiment -