CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-791-raw-cel-1122937461

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
25.3 99.6 101.7 At3g63200 825495 PLP9 (PATATIN-LIKE PROTEIN 9) F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;BPMOF O.I. C.G. H.G.
25.2 99.6 155.8 At3g02040 821175 SRG3 (senescence-related gene 3) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAV O.I. C.G. H.G.
18.2 99.5 211.8 At5g43350 834353 PHT1 Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation. O.I. C.G. H.G.
16.3 99.5 294.8 At4g34200 829568 EDA9 (embryo sac development arrest 9) F:ATP binding;P:megagametogenesis;C:mitochondrion, chloroplast, membrane;BOFMPAV O.I. C.G. H.G.
14.5 99.4 156.4 At1g61800 842477 GPT2 glucose6-Phosphate/phosphate transporter 2 O.I. C.G. H.G.
12.6 99.3 18.8 At4g02700 828201 SULTR3 F:sulfate transmembrane transporter activity;P:sulfate transport, transport;C:integral to membrane, membrane;BOMPFA O.I. C.G. H.G.
12.3 99.3 409.8 At4g12470 826859 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:defense response to fungus, lipid transport;C:endomembrane system;PBOVMFA O.I. C.G. H.G.
12.3 99.3 264.2 At2g15620 816055 NIR1 (NITRITE REDUCTASE 1) involved in the second step of nitrate assimilation O.I. C.G. H.G.
11.9 99.3 304.0 At4g34710 829623 ADC2 (ARGININE DECARBOXYLASE 2) encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. ADC2 is stress-inducible (osmotic stress). Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Overexpression causes phenotypes similar to GA-deficient plants and these plants show reduced levels of GA due to lower expression levels of AtGA20ox1, AtGA3ox3 and AtGA3ox1. O.I. C.G. H.G.
11.8 99.3 109.5 At5g25350 832607 EBF2 (EIN3-BINDING F BOX PROTEIN 2) Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway. O.I. C.G. H.G.
11.8 99.3 32.7 At3g01930 821218 nodulin family protein F:unknown;P:unknown;C:unknown;BPOFMA O.I. C.G. H.G.
11.7 99.3 68.9 At5g43330 834351 malate dehydrogenase, cytosolic, putative F:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:plasma membrane;BOMPFA O.I. C.G. H.G.
11.3 99.3 45.5 At2g34490 818012 CYP710A2 (cytochrome P450, family 710, subfamily A, polypeptide 2) Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze the conversion of both 24-epi-campesterol and β-sitosterol to brassicasterol and stigmasterol, respectively, in the presence of NADPH. O.I. C.G. H.G.
10.2 99.2 98.8 At3g15000 820729 - F:unknown;P:unknown;C:mitochondrion;MFPOBVA O.I. C.G. H.G.
9.9 99.1 256.4 At1g34310 840331 ARF12 (AUXIN RESPONSE FACTOR 12) F:transcription factor activity;P:response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PM O.I. C.G. H.G.
9.7 99.1 442.2 At5g13930 831241 TT4 (TRANSPARENT TESTA 4) Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism. O.I. C.G. H.G.
9.6 99.1 183.7 At3g13110 820499 ATSERAT2 Encodes a mitochondrial serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. O.I. C.G. H.G.
9.1 99.1 129.8 At4g38510 830008 vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative F:hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP metabolic process, ATP synthesis coupled proton transport;C:plasma membrane, vacuole, membrane, chloroplast envelope;BOPMAF O.I. C.G. H.G.
8.8 99.0 112.0 At5g08260 830722 scpl35 (serine carboxypeptidase-like 35) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
8.8 99.0 39.0 At1g64710 842779 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
25.3	99.6	101.7	At3g63200	825495	PLP9 (PATATIN-LIKE PROTEIN 9)	F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;BPMOF	O.I.	C.G.	H.G.
25.2	99.6	155.8	At3g02040	821175	SRG3 (senescence-related gene 3)	F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAV	O.I.	C.G.	H.G.
18.2	99.5	211.8	At5g43350	834353	PHT1	Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation.	O.I.	C.G.	H.G.
16.3	99.5	294.8	At4g34200	829568	EDA9 (embryo sac development arrest 9)	F:ATP binding;P:megagametogenesis;C:mitochondrion, chloroplast, membrane;BOFMPAV	O.I.	C.G.	H.G.
14.5	99.4	156.4	At1g61800	842477	GPT2	glucose6-Phosphate/phosphate transporter 2	O.I.	C.G.	H.G.
12.6	99.3	18.8	At4g02700	828201	SULTR3	F:sulfate transmembrane transporter activity;P:sulfate transport, transport;C:integral to membrane, membrane;BOMPFA	O.I.	C.G.	H.G.
12.3	99.3	409.8	At4g12470	826859	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:defense response to fungus, lipid transport;C:endomembrane system;PBOVMFA	O.I.	C.G.	H.G.
12.3	99.3	264.2	At2g15620	816055	NIR1 (NITRITE REDUCTASE 1)	involved in the second step of nitrate assimilation	O.I.	C.G.	H.G.
11.9	99.3	304.0	At4g34710	829623	ADC2 (ARGININE DECARBOXYLASE 2)	encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. ADC2 is stress-inducible (osmotic stress). Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Overexpression causes phenotypes similar to GA-deficient plants and these plants show reduced levels of GA due to lower expression levels of AtGA20ox1, AtGA3ox3 and AtGA3ox1.	O.I.	C.G.	H.G.
11.8	99.3	109.5	At5g25350	832607	EBF2 (EIN3-BINDING F BOX PROTEIN 2)	Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway.	O.I.	C.G.	H.G.
11.8	99.3	32.7	At3g01930	821218	nodulin family protein	F:unknown;P:unknown;C:unknown;BPOFMA	O.I.	C.G.	H.G.
11.7	99.3	68.9	At5g43330	834351	malate dehydrogenase, cytosolic, putative	F:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:plasma membrane;BOMPFA	O.I.	C.G.	H.G.
11.3	99.3	45.5	At2g34490	818012	CYP710A2 (cytochrome P450, family 710, subfamily A, polypeptide 2)	Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze the conversion of both 24-epi-campesterol and β-sitosterol to brassicasterol and stigmasterol, respectively, in the presence of NADPH.	O.I.	C.G.	H.G.
10.2	99.2	98.8	At3g15000	820729	-	F:unknown;P:unknown;C:mitochondrion;MFPOBVA	O.I.	C.G.	H.G.
9.9	99.1	256.4	At1g34310	840331	ARF12 (AUXIN RESPONSE FACTOR 12)	F:transcription factor activity;P:response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PM	O.I.	C.G.	H.G.
9.7	99.1	442.2	At5g13930	831241	TT4 (TRANSPARENT TESTA 4)	Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism.	O.I.	C.G.	H.G.
9.6	99.1	183.7	At3g13110	820499	ATSERAT2	Encodes a mitochondrial serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system.	O.I.	C.G.	H.G.
9.1	99.1	129.8	At4g38510	830008	vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative	F:hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP metabolic process, ATP synthesis coupled proton transport;C:plasma membrane, vacuole, membrane, chloroplast envelope;BOPMAF	O.I.	C.G.	H.G.
8.8	99.0	112.0	At5g08260	830722	scpl35 (serine carboxypeptidase-like 35)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
8.8	99.0	39.0	At1g64710	842779	alcohol dehydrogenase, putative	F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-MEXP-791-raw-cel-1122937461
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-791-raw-cel-1122937461 GSE experiment -

GSM ID -

Assay name E-MEXP-791-raw-cel-1122937461

GSE experiment -