Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-MEXP-739-raw-cel-1099467419
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
173.8100.0174.2At4g13340826964leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;MBPOFVAO.I.C.G.H.G.
56.599.829.3At4g08040826317ACS11encodes an aminotransferase that belongs to ACC synthase gene family structurallyO.I.C.G.H.G.
46.499.884.0At5g24030832468SLAH3 (SLAC1 HOMOLOGUE 3)Encodes a protein with ten predicted transmembrane helices. The SLAH3 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement an slac1-2 mutant suggesting that it performs a similar function. SLAH3:GFP localizes to the plasma membrane.O.I.C.G.H.G.
40.799.891.4At2g34930818058disease resistance family proteinF:protein binding;P:signal transduction, defense response to fungus, defense response;C:cell wall;PMOBFAVO.I.C.G.H.G.
38.899.893.7At1g06830837195glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOBO.I.C.G.H.G.
34.299.774.4At1g35350840424-F:unknown;P:unknown;C:integral to membrane;FMPOBO.I.C.G.H.G.
24.899.623.9At4g31000829227calmodulin-binding proteinF:calmodulin binding;P:unknown;C:unknown;PMO.I.C.G.H.G.
24.399.6215.9At3g10720820241pectinesterase, putativeF:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
24.299.681.9At4g37450829900AGP18 (ARABINOGALACTAN PROTEIN 18)AGP18 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP17 and AGP19, other lysine-rich AGPs. It is expressed in young leaves, shoots, roots and flowers.O.I.C.G.H.G.
23.799.633.5At2g30540817603glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBOO.I.C.G.H.G.
22.699.694.1At3g06070819780unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
22.499.698.6At1g65390842851ATPP2-A5 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5)F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane, chloroplast;PBO.I.C.G.H.G.
22.399.682.4At5g12050831078unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBO.I.C.G.H.G.
21.699.6179.1At1g57980842165purine permease-relatedF:purine transmembrane transporter activity;P:unknown;C:unknown;PBOO.I.C.G.H.G.
20.799.6222.8At1g19380838521unknown proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
19.799.6148.1At4g38550830012-F:unknown;P:unknown;C:chloroplast;MFPOBVAO.I.C.G.H.G.
19.299.646.6At3g62150825388PGP21 (P-GLYCOPROTEIN 21)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPVO.I.C.G.H.G.
19.099.5166.9At4g2187082827626.5 kDa class P-related heat shock protein (HSP26.5-P)F:unknown;P:response to heat;C:cellular_component unknown;PBOFAO.I.C.G.H.G.
18.899.554.8At5g62280836349unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
18.299.548.4At1g63880842692disease resistance protein (TIR-NBS-LRR class), putativeEncodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans.O.I.C.G.H.G.
17.899.5141.8At5g05440830427unknown proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
17.599.584.5At2g24600816996ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVAO.I.C.G.H.G.
17.299.536.0At1g56510842104WRR4 (WHITE RUST RESISTANCE 4)TIR-NB-LRR protein that confers resistance to four races of Albugo candida.O.I.C.G.H.G.
16.399.5214.2At1g69840843320band 7 family proteinF:unknown;P:biological_process unknown;C:plasma membrane, chloroplast, vacuole;BOMFPAVO.I.C.G.H.G.
15.999.536.0At1g23480838956ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3)encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
15.199.447.4At5g39080833900transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
14.899.4112.8At3g11820820355SYP121 (SYNTAXIN OF PLANTS 121)Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance.O.I.C.G.H.G.
14.799.429.6At1g76890844024--O.I.C.G.H.G.
14.499.447.1At2g33570817922unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOAO.I.C.G.H.G.
13.999.4194.6At1g76160843948sks5 (SKU5 Similar 5)F:oxidoreductase activity, copper ion binding;P:unknown;C:apoplast, cell wall, plant-type cell wall;FBPMOAO.I.C.G.H.G.
13.899.4147.1At4g30280829151XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18)putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.O.I.C.G.H.G.
13.899.410.1At4g00970827936protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
13.799.4155.0At5g45280834564pectinacetylesterase, putativeF:carboxylesterase activity;P:biological_process unknown;C:cell wall;PMOBAO.I.C.G.H.G.
13.699.4103.8At1g27770839670ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor.O.I.C.G.H.G.
13.099.444.3At5g64240836545AtMC3 (metacaspase 3)F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;BFOPAO.I.C.G.H.G.
12.899.3108.9At3g11700820342FLA18 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18 PRECURSOR)F:molecular_function unknown;P:response to cyclopentenone, cell adhesion;C:vacuole;BPOMO.I.C.G.H.G.
12.599.396.9At3g23550821934MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAMO.I.C.G.H.G.
12.499.324.4At2g39360818521protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
12.399.384.8At1g1799083837912-oxophytodienoate reductase, putativeF:unknown;P:unknown;C:unknown;BOFPAMO.I.C.G.H.G.
12.299.3314.1At4g12720826884NUDT7Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death.O.I.C.G.H.G.
12.199.376.3At2g27690817315CYP94C1Encodes a CYP94C1. Has highest omega-hydroxylase activity with 9,10-epoxystearic acid, while also metabolized lauric acid (C12:0) and C18 unsaturated fatty acids. Gene expression is induced in response to wounding and jasmonic acid treatment.O.I.C.G.H.G.
12.099.342.2At1g29430839819auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
11.999.356.0At4g00330828125CRCK2high overall homology to CRCK1O.I.C.G.H.G.
11.999.334.0At1g76130843945AMY2 (ALPHA-AMYLASE-LIKE 2)alpha-amylase, putative / 1,4-alpha-D-glucan glucanohydrolase, putative, strong similarity to alpha-amylase GI:7532799 from (Malus x domestica);contains Pfam profile PF00128: Alpha amylase, catalytic domain. Predicted to be secreted based on SignalP analysis.O.I.C.G.H.G.
11.899.3158.1At5g18600831978glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
11.899.368.4At2g47060819320serine/threonine protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
11.799.342.3At1g63900842693zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFBO.I.C.G.H.G.
11.699.346.5At1g02660839544lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
11.699.324.2At4g23200828419protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:vacuole;MPOBFVAO.I.C.G.H.G.
11.599.3100.4At3g11280820299myb family transcription factorPutative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).O.I.C.G.H.G.
11.499.313.6At1g66230842938MYB20 (myb domain protein 20)Encodes a putative transcription factor (MYB20).O.I.C.G.H.G.
11.399.345.7At3g06150819789unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
11.299.285.0At4g26690828776SHV3 (SHAVEN 3)Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development.O.I.C.G.H.G.
11.199.266.9At2g02180814749TOM3Necessary for the efficient multiplication of tobamoviruses.O.I.C.G.H.G.
11.099.2138.3At5g44070834430CAD1 (CADMIUM SENSITIVE 1)Phytochelatin synthase gene confers tolerance to cadmium ions. Catalyzes phytochelatin (PC) synthesis from glutathione (GSH) in the presence of Cd2+, Zn2+, Cu2+ and Fe3+, but not by Co2+ or Ni2+.O.I.C.G.H.G.
10.999.2129.0At4g25810828686XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)xyloglucan endotransglycosylase-related protein (XTR6)O.I.C.G.H.G.
10.799.2180.9At4g34150829563C2 domain-containing proteinF:unknown;P:response to cold;C:unknown;MPFOBVAO.I.C.G.H.G.
10.699.298.8At5g06980830589unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
10.699.273.3At5g06700830559unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
10.699.221.2At5g42680834277unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
10.599.2108.2At4g33300829466ADR1-L1 (ADR1-like 1)F:protein binding, ATP binding;P:defense response, apoptosis;C:apoplast;PMBOFAO.I.C.G.H.G.
10.599.218.4At2g02170814748remorin family proteinF:DNA binding;P:biological_process unknown;C:plasma membrane;OBMPFAVO.I.C.G.H.G.
10.499.251.7At3g45040823639phosphatidate cytidylyltransferase family proteinEncodes a putative dolichol kinase.O.I.C.G.H.G.
10.499.227.1At4g32800829416AP2 domain-containing transcription factor TINY, putativeencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
10.399.2231.4At2g38310818411unknown proteinF:molecular_function unknown;P:unknown;C:unknown;PBOO.I.C.G.H.G.
10.399.267.7At1g07000837210ATEXO70B2 (exocyst subunit EXO70 family protein B2)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.C.G.H.G.
10.399.252.0At5g25440832618protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:nucleus, cytoplasm;MPOBFVAO.I.C.G.H.G.
10.199.295.6At4g00300828072fringe-related proteinF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:unknown;PFMOBO.I.C.G.H.G.
10.099.2278.4At1g08930837414ERD6 (EARLY RESPONSE TO DEHYDRATION 6)encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold.O.I.C.G.H.G.
10.099.2151.5At1g55450841992embryo-abundant protein-relatedF:methyltransferase activity;P:response to salt stress;C:unknown;BPFMOAO.I.C.G.H.G.
10.099.277.9At5g15410831393DND1 (DEFENSE NO DEATH 1)'defense, no death' gene (DND1) encodes a mutated cyclic nucleotide-gated cation channel; Same as CNGC2 (article ID 229): Cyclic nucleotide gated channel, activated by cAMP, conducts K+ and other monovalent cations but excludes Na+, does not contain the GYG amino acid sequence found in other channels with this conductivity profile. Conducts Ca2+ into cells which is linked to the generation of NO and the NO signaling pathway involved in the innate immune response to pathogens.O.I.C.G.H.G.
10.099.234.4At2g22300816762SR1 (SIGNAL RESPONSIVE 1)Encodes a putative CAM binding transcription factor. Loss of function mutations show enhanced resistance to fungal and bacterial pathogens suggesting that CAMTA functions to suppress defense responses.O.I.C.G.H.G.
9.999.186.0At1g51805841607leucine-rich repeat protein kinase, putativeF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
9.899.1275.9At3g01290821309band 7 family proteinF:unknown;P:N-terminal protein myristoylation;C:mitochondrion, plasma membrane, vacuole, membrane;BOMFPAVO.I.C.G.H.G.
9.899.158.9At4g19530827695disease resistance protein (TIR-NBS-LRR class), putativeEncodes a TIR-NB-LRR resistance protein. Transient expression in tobacco induces cell death.O.I.C.G.H.G.
9.899.129.3At4g32300829365SD2-5 (S-DOMAIN-2 5)F:carbohydrate binding, protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
9.699.166.5At1g07180837229NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1)Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.O.I.C.G.H.G.
9.699.158.6At2g34510818014-F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PBO.I.C.G.H.G.
9.699.114.5At3g63440825519CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6)This gene used to be called AtCKX7. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.O.I.C.G.H.G.
9.499.173.4At3g59060825075PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B.O.I.C.G.H.G.
9.499.146.6At3g12400820419ELCMutants of this gene were initially identified because of the trichome morphogenesis phenotype. Those trichomes have multiple nuclei, a defect that turns out not to be restricted to the trichomes but also in all endoreduplicating cell types. This gene encodes a ubiquitin-binding protein with sequence similarities with yeast proteins that are components of the ESCRTI-III complexes. The Arabidopsis protein is found associated with the endosome.O.I.C.G.H.G.
9.499.132.2At3g47560823910esterase/lipase/thioesterase family proteinF:catalytic activity;P:unknown;C:unknown;OBPFAMO.I.C.G.H.G.
9.299.130.8At3g61210825293embryo-abundant protein-relatedF:unknown;P:unknown;C:cellular_component unknown;BPFOMAO.I.C.G.H.G.
9.299.120.9At5g58120835924disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAO.I.C.G.H.G.
9.199.113.0At1g33340840228epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedF:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat;POFMO.I.C.G.H.G.
9.099.129.5At5g60860836207AtRABA1f (Arabidopsis Rab GTPase homolog A1f)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBAVO.I.C.G.H.G.
8.999.034.1At3g44630823589disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation, defense response;C:intrinsic to membrane;PMBOFAVO.I.C.G.H.G.
8.999.028.0At1g76360843968protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVAO.I.C.G.H.G.
8.999.023.2At1g04200839439unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;MOPFO.I.C.G.H.G.
8.999.021.4At4g27730828887OPT6 (OLIGOPEPTIDE TRANSPORTER 1)oligopeptide transporterO.I.C.G.H.G.
8.899.0265.8At3g23820821965GAE6 (UDP-D-GLUCURONATE 4-EPIMERASE 6)UDP-D-glucuronate 4-epimeraseO.I.C.G.H.G.
8.899.0123.0At5g03520831817ATRAB8CF:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVAO.I.C.G.H.G.
8.899.067.2At4g39640830118GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1)The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast.O.I.C.G.H.G.
8.899.039.7At5g03120831807unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
8.799.066.8At4g23570828457SGT1AClosely related to SGT1B, may function in SCF(TIR1) mediated protein degradation. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly expressed than AtSGT1. The N-terminal TPR domain of AtSGT1a reduces the steady-state level of Arabidopsis SGT1 proteins whereas the same domain from AtSGT1b enhances SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance. AtSGT1a is induced upon pathogen infection and can function in R gene-mediated resistance.O.I.C.G.H.G.
8.799.051.9At1g23090838917AST91 (SULFATE TRANSPORTER 91)Encodes AST91 mRNA for sulfate transporter.O.I.C.G.H.G.
8.699.018.2At1g27910839684PUB45 (PLANT U-BOX 45)Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.O.I.C.G.H.G.



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