CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-739-raw-cel-1099467384

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
512.0 100.0 72.3 At1g49150 841338 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
295.2 100.0 55.4 At5g39820 833978 anac094 (Arabidopsis NAC domain containing protein 94) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POM O.I. C.G. H.G.
279.9 100.0 103.8 At2g38340 818414 AP2 domain-containing transcription factor, putative (DRE2B) encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. O.I. C.G. H.G.
196.0 100.0 170.9 At5g20910 832215 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:nucleus;PMOFV O.I. C.G. H.G.
171.5 100.0 134.5 At2g41040 818703 methyltransferase-related F:methyltransferase activity;P:metabolic process;C:chloroplast, plastoglobule;BOAPFM O.I. C.G. H.G.
153.9 99.9 78.2 At1g05880 837098 nucleic acid binding / protein binding / structural molecule/ zinc ion binding F:protein binding, structural molecule activity, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:tight junction;MOPF O.I. C.G. H.G.
132.7 99.9 173.8 At1g32940 840188 SBT3.5 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOAFM O.I. C.G. H.G.
130.8 99.9 268.7 At3g53230 824489 cell division cycle protein 48, putative / CDC48, putative F:hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding;P:response to cadmium ion;C:cytosol, nucleolus, plasma membrane;BOMFPAV O.I. C.G. H.G.
110.2 99.9 113.5 At1g71000 843439 heat shock protein binding F:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
108.6 99.9 189.7 At1g47250 841128 PAF2 Encodes 20S proteasome subunit PAF2 (PAF2). O.I. C.G. H.G.
97.2 99.9 133.1 At1g09100 837431 RPT5B (26S proteasome AAA-ATPase subunit RPT5B) Encodes RPT5b (Regulatory Particle 5b), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype. O.I. C.G. H.G.
96.3 99.9 182.7 At3g28210 822447 PMZ Encodes a putative zinc finger protein (PMZ). O.I. C.G. H.G.
94.8 99.9 59.4 At1g20350 838623 ATTIM17-1 mitochondrial inner membrane translocase O.I. C.G. H.G.
89.1 99.9 88.6 At5g05190 830401 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPV O.I. C.G. H.G.
88.8 99.9 245.4 At1g79210 844262 20S proteasome alpha subunit B, putative F:endopeptidase activity, threonine-type endopeptidase activity;P:defense response to bacterium, ubiquitin-dependent protein catabolic process;C:proteasome core complex;MFOPAB O.I. C.G. H.G.
85.9 99.9 27.2 At1g20180 838607 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
81.0 99.9 232.1 At5g40580 834056 PBB2 Encodes 20S proteasome beta subunit PBB2 (PBB2). O.I. C.G. H.G.
79.2 99.9 25.1 At1g32950 840189 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOAFM O.I. C.G. H.G.
78.9 99.9 35.9 At1g21240 838719 WAK3 (wall associated kinase 3) encodes a wall-associated kinase O.I. C.G. H.G.
78.8 99.9 230.4 At1g43910 840990 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
78.7 99.9 123.3 At3g11270 820298 MEE34 (maternal effect embryo arrest 34) F:molecular_function unknown;P:embryonic development ending in seed dormancy, protein catabolic process, ubiquitin-dependent protein catabolic process;C:nucleus, proteasome regulatory particle, lid subcomplex;MFPO O.I. C.G. H.G.
75.7 99.9 245.6 At5g66140 836746 PAD2 (PROTEASOME ALPHA SUBUNIT D 2) Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation. O.I. C.G. H.G.
74.7 99.9 77.6 At3g21280 821682 UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7) Encodes a ubiquitin-specific protease. O.I. C.G. H.G.
69.1 99.9 99.0 At1g66090 842923 disease resistance protein (TIR-NBS class), putative F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PBOMF O.I. C.G. H.G.
65.9 99.8 49.7 At3g03060 821146 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:cell wall, plant-type cell wall;OMBFPAV O.I. C.G. H.G.
64.7 99.8 85.9 At2g03430 814872 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cell wall;MOFBPVA O.I. C.G. H.G.
62.9 99.8 254.6 At1g77440 844080 PBC2 Encodes beta subunit of 20s proteosome complex which is involved in protein degradation. O.I. C.G. H.G.
62.6 99.8 42.5 At3g13100 820498 ATMRP7 member of MRP subfamily O.I. C.G. H.G.
62.1 99.8 102.9 At3g17611 821028 ATRBL14 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14) F:zinc ion binding;P:biological_process unknown;C:integral to membrane, intracellular;BOPMFAV O.I. C.G. H.G.
58.4 99.8 37.8 At1g31280 840016 AGO2 (argonaute 2) An Argonaute gene O.I. C.G. H.G.
58.3 99.8 134.1 At1g74710 843810 isochorismate synthase 1 (ICS1) / isochorismate mutase Encodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870). O.I. C.G. H.G.
58.2 99.8 27.0 At5g61320 836253 CYP89A3 member of CYP89A O.I. C.G. H.G.
57.6 99.8 159.8 At5g51440 835218 23.5 kDa mitochondrial small heat shock protein (HSP23.5-M) F:molecular_function unknown;P:response to heat;C:unknown;BPOAFM O.I. C.G. H.G.
57.4 99.8 124.9 At2g21640 816702 - Encodes a protein of unknown function that is a marker for oxidative stress response. O.I. C.G. H.G.
56.7 99.8 165.8 At3g13330 820533 binding F:binding;P:unknown;C:cellular_component unknown;FMOP O.I. C.G. H.G.
56.7 99.8 128.6 At3g13235 820522 ubiquitin family protein F:aspartic-type endopeptidase activity;P:response to cadmium ion;C:cytosol, nucleus;MPOFVB O.I. C.G. H.G.
55.9 99.8 38.4 At5g01550 831700 LECRKA4.2 (LECTIN RECEPTOR KINASE A4.1) Encodes LecRKA4.2, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination. O.I. C.G. H.G.
52.1 99.8 31.2 At1g24090 839020 RNase H domain-containing protein F:ribonuclease H activity, nucleic acid binding;P:biological_process unknown;C:unknown;PBOAM O.I. C.G. H.G.
50.4 99.8 152.7 At1g57630 842139 disease resistance protein (TIR class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P O.I. C.G. H.G.
47.9 99.8 27.7 At5g16930 831556 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;OMBFPAV O.I. C.G. H.G.
47.7 99.8 52.6 At1g23550 838965 SRO2 (SIMILAR TO RCD ONE 2) Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. O.I. C.G. H.G.
47.5 99.8 75.3 At3g53970 824564 proteasome inhibitor-related F:molecular_function unknown;P:unknown;C:unknown;MFOBPVA O.I. C.G. H.G.
46.7 99.8 224.2 At5g19990 832121 RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) 26S proteasome AAA-ATPase subunit O.I. C.G. H.G.
46.6 99.8 99.7 At4g15420 827213 PRLI-interacting factor K F:peptidase activity, zinc ion binding;P:proteolysis, ubiquitin-dependent protein catabolic process;C:intracellular;MOFPB O.I. C.G. H.G.
46.2 99.8 23.7 At5g46080 834649 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
44.6 99.8 259.6 At1g16470 838217 PAB1 (PROTEASOME SUBUNIT PAB1) Encodes 20S proteasome subunit PAB1 (PAB1). O.I. C.G. H.G.
43.7 99.8 20.4 At5g44390 834465 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFOPMA O.I. C.G. H.G.
42.0 99.8 38.3 At2g40340 818627 AP2 domain-containing transcription factor, putative (DRE2B) encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. O.I. C.G. H.G.
41.8 99.8 79.6 At1g67970 843125 AT-HSFA8 member of Heat Stress Transcription Factor (Hsf) family O.I. C.G. H.G.
40.5 99.8 405.1 At4g14690 827119 ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2) Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis. O.I. C.G. H.G.
40.4 99.8 49.3 At4g37290 829883 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
39.9 99.8 176.0 At5g45010 834532 ATDSS1(V) (Arabidopsis dss1 homolog on chromosome V) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
39.6 99.8 21.7 At5g64060 836527 anac103 (Arabidopsis NAC domain containing protein 103) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
38.8 99.8 75.5 At5g51740 835248 peptidase M48 family protein F:metalloendopeptidase activity;P:proteolysis;C:membrane;BOFMPA O.I. C.G. H.G.
38.6 99.8 66.1 At5g25250 832596 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPAV O.I. C.G. H.G.
37.7 99.7 265.3 At5g56350 835735 pyruvate kinase, putative F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFA O.I. C.G. H.G.
37.0 99.7 85.1 At1g01940 839309 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:cellular_component unknown;OBMFPA O.I. C.G. H.G.
36.6 99.7 92.2 At4g03320 827972 tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV) F:unknown;P:unknown;C:unknown;PB O.I. C.G. H.G.
36.2 99.7 350.7 At1g67250 843045 proteasome maturation factor UMP1 family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
35.2 99.7 295.0 At5g42790 834290 PAF1 encodes a protein with extensive homology to the largest subunit of the multicatalytic proteinase complex (proteasome) O.I. C.G. H.G.
35.0 99.7 98.8 At3g22910 821863 calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13) F:calmodulin binding, calcium-transporting ATPase activity;P:cation transport, calcium ion transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAV O.I. C.G. H.G.
34.5 99.7 233.3 At3g14290 820649 PAE2 Encodes 20S proteasome subunit PAE2 (PAE2). O.I. C.G. H.G.
34.4 99.7 108.4 At1g32350 840127 AOX1D (alternative oxidase 1D) F:alternative oxidase activity;P:oxidation reduction, response to cyclopentenone;C:mitochondrial envelope, mitochondrion;OPFBM O.I. C.G. H.G.
33.8 99.7 51.7 At3g10480 820212 no apical meristem (NAM) family protein F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;POMFB O.I. C.G. H.G.
33.1 99.7 13.7 At1g61610 842457 S-locus lectin protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
32.7 99.7 256.1 At4g14800 827135 PBD2 (20S PROTEASOME BETA SUBUNIT 2) Encodes 20S proteasome beta subunit PBD2 (PBD2). O.I. C.G. H.G.
32.6 99.7 165.6 At2g20580 816580 RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) encoding the RPN subunits of the 26S proteasome O.I. C.G. H.G.
32.5 99.7 259.4 At4g29040 829025 RPT2a (regulatory particle AAA-ATPase 2a) 26S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA, O.I. C.G. H.G.
32.3 99.7 56.1 At5g64760 836597 RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous genes RPN5a. O.I. C.G. H.G.
32.1 99.7 29.6 At1g62840 842584 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
32.1 99.7 26.5 At1g16420 838212 MC8 (METACASPASE 8) Encodes a metacaspase (cysteine-type endopeptidase) that is involved in promoting programmed cell death in response to hydrogen peroxide (H2O2), UV light, and methyl viologen (MV). Transcript levels rise in response to UV-C, H2O2, and MV. In vitro assays demonstrate that this enzyme has a preference for cleaving after an arginine residue, and it has a pH optimum of 8.0. O.I. C.G. H.G.
31.5 99.7 245.8 At1g53850 841822 PAE1 Encodes alpha5 subunit of 20s proteosome involved in protein degradation. O.I. C.G. H.G.
31.5 99.7 46.7 At3g25545 822141 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
31.3 99.7 68.6 At2g35900 818163 unknown protein F:molecular_function unknown;P:biological_process unknown;C:nucleus;P O.I. C.G. H.G.
31.0 99.7 47.6 At1g26390 839181 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAM O.I. C.G. H.G.
30.3 99.7 52.2 At4g20400 827788 transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein F:transcription factor activity;P:regulation of transcription;C:nucleus;MFPO O.I. C.G. H.G.
30.1 99.7 232.8 At3g51260 824289 PAD1 (20s proteasome alpha subunit pad1) 20S proteosomal alpha subunits. Interacts with SnRK, SKP1/ASK1 during proteasomal binding of an SCF ubiquitin ligase. O.I. C.G. H.G.
30.1 99.7 104.6 At4g27585 828868 band 7 family protein F:unknown;P:biological_process unknown;C:mitochondrion, plastid, membrane;BOMPAFV O.I. C.G. H.G.
30.0 99.7 136.1 At5g51570 835231 band 7 family protein F:unknown;P:N-terminal protein myristoylation;C:plasma membrane, vacuole;BOPFMAV O.I. C.G. H.G.
29.9 99.7 103.6 At1g04810 839409 26S proteasome regulatory subunit, putative F:enzyme regulator activity, binding;P:protein catabolic process, ubiquitin-dependent protein catabolic process;C:proteasome regulatory particle, base subcomplex, nucleus, plasma membrane;MFOPBA O.I. C.G. H.G.
29.7 99.7 222.2 At2g05840 815135 PAA2 (20S PROTEASOME SUBUNIT PAA2) Encodes 20S proteasome subunit PAA2 (PAA2). O.I. C.G. H.G.
29.6 99.7 122.6 At1g56060 842057 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
29.6 99.7 13.0 At4g05370 825885 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
29.1 99.7 77.2 At2g18680 816383 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO O.I. C.G. H.G.
29.1 99.7 10.2 At2g23830 816915 vesicle-associated membrane protein, putative / VAMP, putative F:structural molecule activity;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
28.6 99.7 194.9 At3g27430 822364 PBB1 Encodes 20S proteasome beta subunit PBB1 (PBB1). O.I. C.G. H.G.
28.6 99.7 130.7 At3g08690 820016 UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV O.I. C.G. H.G.
28.3 99.7 54.2 At1g73805 843716 calmodulin binding F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
28.2 99.7 73.3 At2g26780 817219 binding F:binding;P:biological_process unknown;C:membrane;MFPO O.I. C.G. H.G.
28.1 99.7 217.3 At1g20200 838609 EMB2719 (EMBRYO DEFECTIVE 2719) F:enzyme regulator activity;P:embryonic development ending in seed dormancy, ubiquitin-dependent protein catabolic process;C:plasma membrane, proteasome regulatory particle, lid subcomplex;MFPO O.I. C.G. H.G.
28.0 99.7 78.7 At5g55200 835613 co-chaperone grpE protein, putative F:ATP binding;P:protein folding;C:mitochondrion;BOMFPA O.I. C.G. H.G.
27.6 99.7 178.9 At3g57090 824876 BIGYIN Encodes a protein with similarity to yeast FIS proteins. These membrane anchored proteins bind DRP proteins and function during organelle division. FIS1B is expressed ubiquitously and appears to be involved in peroxisome division. O.I. C.G. H.G.
27.6 99.7 55.4 At1g02090 839241 FUS5 (FUSCA 5) encodes a phosphoprotein that is a subunit of the COP9 signalosome. Mutants exhibit constitutive photomorphogenic phenotype. O.I. C.G. H.G.
27.4 99.7 95.8 At5g13800 831225 hydrolase, alpha/beta fold family protein F:hydrolase activity, pheophytinase activity;P:chlorophyll catabolic process;C:chloroplast;BOPMAF O.I. C.G. H.G.
27.1 99.7 20.7 At5g12930 831133 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOABF O.I. C.G. H.G.
27.0 99.7 20.2 At4g36580 829810 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;OBMFPAV O.I. C.G. H.G.
26.7 99.7 141.0 At3g46440 823794 UXS5 encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes. O.I. C.G. H.G.
26.6 99.7 176.1 At4g39670 830121 glycolipid binding / glycolipid transporter F:glycolipid transporter activity, glycolipid binding;P:glycolipid transport;C:cytoplasm;MPOF O.I. C.G. H.G.
26.6 99.7 147.4 At3g09350 820091 armadillo/beta-catenin repeat family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
26.4 99.7 86.3 At3g03890 821082 FMN binding F:FMN binding;P:unknown;C:chloroplast;BOPM O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
512.0	100.0	72.3	At1g49150	841338	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
295.2	100.0	55.4	At5g39820	833978	anac094 (Arabidopsis NAC domain containing protein 94)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
279.9	100.0	103.8	At2g38340	818414	AP2 domain-containing transcription factor, putative (DRE2B)	encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	O.I.	C.G.	H.G.
196.0	100.0	170.9	At5g20910	832215	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:nucleus;PMOFV	O.I.	C.G.	H.G.
171.5	100.0	134.5	At2g41040	818703	methyltransferase-related	F:methyltransferase activity;P:metabolic process;C:chloroplast, plastoglobule;BOAPFM	O.I.	C.G.	H.G.
153.9	99.9	78.2	At1g05880	837098	nucleic acid binding / protein binding / structural molecule/ zinc ion binding	F:protein binding, structural molecule activity, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:tight junction;MOPF	O.I.	C.G.	H.G.
132.7	99.9	173.8	At1g32940	840188	SBT3.5	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOAFM	O.I.	C.G.	H.G.
130.8	99.9	268.7	At3g53230	824489	cell division cycle protein 48, putative / CDC48, putative	F:hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding;P:response to cadmium ion;C:cytosol, nucleolus, plasma membrane;BOMFPAV	O.I.	C.G.	H.G.
110.2	99.9	113.5	At1g71000	843439	heat shock protein binding	F:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
108.6	99.9	189.7	At1g47250	841128	PAF2	Encodes 20S proteasome subunit PAF2 (PAF2).	O.I.	C.G.	H.G.
97.2	99.9	133.1	At1g09100	837431	RPT5B (26S proteasome AAA-ATPase subunit RPT5B)	Encodes RPT5b (Regulatory Particle 5b), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.	O.I.	C.G.	H.G.
96.3	99.9	182.7	At3g28210	822447	PMZ	Encodes a putative zinc finger protein (PMZ).	O.I.	C.G.	H.G.
94.8	99.9	59.4	At1g20350	838623	ATTIM17-1	mitochondrial inner membrane translocase	O.I.	C.G.	H.G.
89.1	99.9	88.6	At5g05190	830401	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPV	O.I.	C.G.	H.G.
88.8	99.9	245.4	At1g79210	844262	20S proteasome alpha subunit B, putative	F:endopeptidase activity, threonine-type endopeptidase activity;P:defense response to bacterium, ubiquitin-dependent protein catabolic process;C:proteasome core complex;MFOPAB	O.I.	C.G.	H.G.
85.9	99.9	27.2	At1g20180	838607	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
81.0	99.9	232.1	At5g40580	834056	PBB2	Encodes 20S proteasome beta subunit PBB2 (PBB2).	O.I.	C.G.	H.G.
79.2	99.9	25.1	At1g32950	840189	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOAFM	O.I.	C.G.	H.G.
78.9	99.9	35.9	At1g21240	838719	WAK3 (wall associated kinase 3)	encodes a wall-associated kinase	O.I.	C.G.	H.G.
78.8	99.9	230.4	At1g43910	840990	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
78.7	99.9	123.3	At3g11270	820298	MEE34 (maternal effect embryo arrest 34)	F:molecular_function unknown;P:embryonic development ending in seed dormancy, protein catabolic process, ubiquitin-dependent protein catabolic process;C:nucleus, proteasome regulatory particle, lid subcomplex;MFPO	O.I.	C.G.	H.G.
75.7	99.9	245.6	At5g66140	836746	PAD2 (PROTEASOME ALPHA SUBUNIT D 2)	Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation.	O.I.	C.G.	H.G.
74.7	99.9	77.6	At3g21280	821682	UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7)	Encodes a ubiquitin-specific protease.	O.I.	C.G.	H.G.
69.1	99.9	99.0	At1g66090	842923	disease resistance protein (TIR-NBS class), putative	F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PBOMF	O.I.	C.G.	H.G.
65.9	99.8	49.7	At3g03060	821146	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:cell wall, plant-type cell wall;OMBFPAV	O.I.	C.G.	H.G.
64.7	99.8	85.9	At2g03430	814872	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cell wall;MOFBPVA	O.I.	C.G.	H.G.
62.9	99.8	254.6	At1g77440	844080	PBC2	Encodes beta subunit of 20s proteosome complex which is involved in protein degradation.	O.I.	C.G.	H.G.
62.6	99.8	42.5	At3g13100	820498	ATMRP7	member of MRP subfamily	O.I.	C.G.	H.G.
62.1	99.8	102.9	At3g17611	821028	ATRBL14 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14)	F:zinc ion binding;P:biological_process unknown;C:integral to membrane, intracellular;BOPMFAV	O.I.	C.G.	H.G.
58.4	99.8	37.8	At1g31280	840016	AGO2 (argonaute 2)	An Argonaute gene	O.I.	C.G.	H.G.
58.3	99.8	134.1	At1g74710	843810	isochorismate synthase 1 (ICS1) / isochorismate mutase	Encodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870).	O.I.	C.G.	H.G.
58.2	99.8	27.0	At5g61320	836253	CYP89A3	member of CYP89A	O.I.	C.G.	H.G.
57.6	99.8	159.8	At5g51440	835218	23.5 kDa mitochondrial small heat shock protein (HSP23.5-M)	F:molecular_function unknown;P:response to heat;C:unknown;BPOAFM	O.I.	C.G.	H.G.
57.4	99.8	124.9	At2g21640	816702	-	Encodes a protein of unknown function that is a marker for oxidative stress response.	O.I.	C.G.	H.G.
56.7	99.8	165.8	At3g13330	820533	binding	F:binding;P:unknown;C:cellular_component unknown;FMOP	O.I.	C.G.	H.G.
56.7	99.8	128.6	At3g13235	820522	ubiquitin family protein	F:aspartic-type endopeptidase activity;P:response to cadmium ion;C:cytosol, nucleus;MPOFVB	O.I.	C.G.	H.G.
55.9	99.8	38.4	At5g01550	831700	LECRKA4.2 (LECTIN RECEPTOR KINASE A4.1)	Encodes LecRKA4.2, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.	O.I.	C.G.	H.G.
52.1	99.8	31.2	At1g24090	839020	RNase H domain-containing protein	F:ribonuclease H activity, nucleic acid binding;P:biological_process unknown;C:unknown;PBOAM	O.I.	C.G.	H.G.
50.4	99.8	152.7	At1g57630	842139	disease resistance protein (TIR class), putative	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P	O.I.	C.G.	H.G.
47.9	99.8	27.7	At5g16930	831556	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;OMBFPAV	O.I.	C.G.	H.G.
47.7	99.8	52.6	At1g23550	838965	SRO2 (SIMILAR TO RCD ONE 2)	Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.	O.I.	C.G.	H.G.
47.5	99.8	75.3	At3g53970	824564	proteasome inhibitor-related	F:molecular_function unknown;P:unknown;C:unknown;MFOBPVA	O.I.	C.G.	H.G.
46.7	99.8	224.2	At5g19990	832121	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	26S proteasome AAA-ATPase subunit	O.I.	C.G.	H.G.
46.6	99.8	99.7	At4g15420	827213	PRLI-interacting factor K	F:peptidase activity, zinc ion binding;P:proteolysis, ubiquitin-dependent protein catabolic process;C:intracellular;MOFPB	O.I.	C.G.	H.G.
46.2	99.8	23.7	At5g46080	834649	protein kinase family protein	F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
44.6	99.8	259.6	At1g16470	838217	PAB1 (PROTEASOME SUBUNIT PAB1)	Encodes 20S proteasome subunit PAB1 (PAB1).	O.I.	C.G.	H.G.
43.7	99.8	20.4	At5g44390	834465	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFOPMA	O.I.	C.G.	H.G.
42.0	99.8	38.3	At2g40340	818627	AP2 domain-containing transcription factor, putative (DRE2B)	encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	O.I.	C.G.	H.G.
41.8	99.8	79.6	At1g67970	843125	AT-HSFA8	member of Heat Stress Transcription Factor (Hsf) family	O.I.	C.G.	H.G.
40.5	99.8	405.1	At4g14690	827119	ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)	Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis.	O.I.	C.G.	H.G.
40.4	99.8	49.3	At4g37290	829883	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
39.9	99.8	176.0	At5g45010	834532	ATDSS1(V) (Arabidopsis dss1 homolog on chromosome V)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
39.6	99.8	21.7	At5g64060	836527	anac103 (Arabidopsis NAC domain containing protein 103)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
38.8	99.8	75.5	At5g51740	835248	peptidase M48 family protein	F:metalloendopeptidase activity;P:proteolysis;C:membrane;BOFMPA	O.I.	C.G.	H.G.
38.6	99.8	66.1	At5g25250	832596	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPAV	O.I.	C.G.	H.G.
37.7	99.7	265.3	At5g56350	835735	pyruvate kinase, putative	F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFA	O.I.	C.G.	H.G.
37.0	99.7	85.1	At1g01940	839309	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:cellular_component unknown;OBMFPA	O.I.	C.G.	H.G.
36.6	99.7	92.2	At4g03320	827972	tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV)	F:unknown;P:unknown;C:unknown;PB	O.I.	C.G.	H.G.
36.2	99.7	350.7	At1g67250	843045	proteasome maturation factor UMP1 family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
35.2	99.7	295.0	At5g42790	834290	PAF1	encodes a protein with extensive homology to the largest subunit of the multicatalytic proteinase complex (proteasome)	O.I.	C.G.	H.G.
35.0	99.7	98.8	At3g22910	821863	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)	F:calmodulin binding, calcium-transporting ATPase activity;P:cation transport, calcium ion transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAV	O.I.	C.G.	H.G.
34.5	99.7	233.3	At3g14290	820649	PAE2	Encodes 20S proteasome subunit PAE2 (PAE2).	O.I.	C.G.	H.G.
34.4	99.7	108.4	At1g32350	840127	AOX1D (alternative oxidase 1D)	F:alternative oxidase activity;P:oxidation reduction, response to cyclopentenone;C:mitochondrial envelope, mitochondrion;OPFBM	O.I.	C.G.	H.G.
33.8	99.7	51.7	At3g10480	820212	no apical meristem (NAM) family protein	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;POMFB	O.I.	C.G.	H.G.
33.1	99.7	13.7	At1g61610	842457	S-locus lectin protein kinase family protein	F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
32.7	99.7	256.1	At4g14800	827135	PBD2 (20S PROTEASOME BETA SUBUNIT 2)	Encodes 20S proteasome beta subunit PBD2 (PBD2).	O.I.	C.G.	H.G.
32.6	99.7	165.6	At2g20580	816580	RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A)	encoding the RPN subunits of the 26S proteasome	O.I.	C.G.	H.G.
32.5	99.7	259.4	At4g29040	829025	RPT2a (regulatory particle AAA-ATPase 2a)	26S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA,	O.I.	C.G.	H.G.
32.3	99.7	56.1	At5g64760	836597	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous genes RPN5a.	O.I.	C.G.	H.G.
32.1	99.7	29.6	At1g62840	842584	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
32.1	99.7	26.5	At1g16420	838212	MC8 (METACASPASE 8)	Encodes a metacaspase (cysteine-type endopeptidase) that is involved in promoting programmed cell death in response to hydrogen peroxide (H2O2), UV light, and methyl viologen (MV). Transcript levels rise in response to UV-C, H2O2, and MV. In vitro assays demonstrate that this enzyme has a preference for cleaving after an arginine residue, and it has a pH optimum of 8.0.	O.I.	C.G.	H.G.
31.5	99.7	245.8	At1g53850	841822	PAE1	Encodes alpha5 subunit of 20s proteosome involved in protein degradation.	O.I.	C.G.	H.G.
31.5	99.7	46.7	At3g25545	822141	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
31.3	99.7	68.6	At2g35900	818163	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:nucleus;P	O.I.	C.G.	H.G.
31.0	99.7	47.6	At1g26390	839181	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAM	O.I.	C.G.	H.G.
30.3	99.7	52.2	At4g20400	827788	transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein	F:transcription factor activity;P:regulation of transcription;C:nucleus;MFPO	O.I.	C.G.	H.G.
30.1	99.7	232.8	At3g51260	824289	PAD1 (20s proteasome alpha subunit pad1)	20S proteosomal alpha subunits. Interacts with SnRK, SKP1/ASK1 during proteasomal binding of an SCF ubiquitin ligase.	O.I.	C.G.	H.G.
30.1	99.7	104.6	At4g27585	828868	band 7 family protein	F:unknown;P:biological_process unknown;C:mitochondrion, plastid, membrane;BOMPAFV	O.I.	C.G.	H.G.
30.0	99.7	136.1	At5g51570	835231	band 7 family protein	F:unknown;P:N-terminal protein myristoylation;C:plasma membrane, vacuole;BOPFMAV	O.I.	C.G.	H.G.
29.9	99.7	103.6	At1g04810	839409	26S proteasome regulatory subunit, putative	F:enzyme regulator activity, binding;P:protein catabolic process, ubiquitin-dependent protein catabolic process;C:proteasome regulatory particle, base subcomplex, nucleus, plasma membrane;MFOPBA	O.I.	C.G.	H.G.
29.7	99.7	222.2	At2g05840	815135	PAA2 (20S PROTEASOME SUBUNIT PAA2)	Encodes 20S proteasome subunit PAA2 (PAA2).	O.I.	C.G.	H.G.
29.6	99.7	122.6	At1g56060	842057	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
29.6	99.7	13.0	At4g05370	825885	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
29.1	99.7	77.2	At2g18680	816383	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO	O.I.	C.G.	H.G.
29.1	99.7	10.2	At2g23830	816915	vesicle-associated membrane protein, putative / VAMP, putative	F:structural molecule activity;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
28.6	99.7	194.9	At3g27430	822364	PBB1	Encodes 20S proteasome beta subunit PBB1 (PBB1).	O.I.	C.G.	H.G.
28.6	99.7	130.7	At3g08690	820016	UBC11 (UBIQUITIN-CONJUGATING ENZYME 11)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV	O.I.	C.G.	H.G.
28.3	99.7	54.2	At1g73805	843716	calmodulin binding	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
28.2	99.7	73.3	At2g26780	817219	binding	F:binding;P:biological_process unknown;C:membrane;MFPO	O.I.	C.G.	H.G.
28.1	99.7	217.3	At1g20200	838609	EMB2719 (EMBRYO DEFECTIVE 2719)	F:enzyme regulator activity;P:embryonic development ending in seed dormancy, ubiquitin-dependent protein catabolic process;C:plasma membrane, proteasome regulatory particle, lid subcomplex;MFPO	O.I.	C.G.	H.G.
28.0	99.7	78.7	At5g55200	835613	co-chaperone grpE protein, putative	F:ATP binding;P:protein folding;C:mitochondrion;BOMFPA	O.I.	C.G.	H.G.
27.6	99.7	178.9	At3g57090	824876	BIGYIN	Encodes a protein with similarity to yeast FIS proteins. These membrane anchored proteins bind DRP proteins and function during organelle division. FIS1B is expressed ubiquitously and appears to be involved in peroxisome division.	O.I.	C.G.	H.G.
27.6	99.7	55.4	At1g02090	839241	FUS5 (FUSCA 5)	encodes a phosphoprotein that is a subunit of the COP9 signalosome. Mutants exhibit constitutive photomorphogenic phenotype.	O.I.	C.G.	H.G.
27.4	99.7	95.8	At5g13800	831225	hydrolase, alpha/beta fold family protein	F:hydrolase activity, pheophytinase activity;P:chlorophyll catabolic process;C:chloroplast;BOPMAF	O.I.	C.G.	H.G.
27.1	99.7	20.7	At5g12930	831133	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOABF	O.I.	C.G.	H.G.
27.0	99.7	20.2	At4g36580	829810	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;OBMFPAV	O.I.	C.G.	H.G.
26.7	99.7	141.0	At3g46440	823794	UXS5	encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.	O.I.	C.G.	H.G.
26.6	99.7	176.1	At4g39670	830121	glycolipid binding / glycolipid transporter	F:glycolipid transporter activity, glycolipid binding;P:glycolipid transport;C:cytoplasm;MPOF	O.I.	C.G.	H.G.
26.6	99.7	147.4	At3g09350	820091	armadillo/beta-catenin repeat family protein	F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
26.4	99.7	86.3	At3g03890	821082	FMN binding	F:FMN binding;P:unknown;C:chloroplast;BOPM	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-MEXP-739-raw-cel-1099467384
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-739-raw-cel-1099467384 GSE experiment -

GSM ID -

Assay name E-MEXP-739-raw-cel-1099467384

GSE experiment -