CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-739-raw-cel-1099467348

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
64.0 99.8 72.8 At5g58310 835943 MES18 (METHYL ESTERASE 18) Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
47.3 99.8 94.6 At4g16590 827360 ATCSLA01 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
34.5 99.7 156.3 At3g28270 822453 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMPOAFV O.I. C.G. H.G.
20.8 99.6 118.7 At4g01080 827902 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
19.4 99.6 100.7 At4g12310 826840 CYP706A5 member of CYP706A O.I. C.G. H.G.
16.7 99.5 141.2 At5g63780 836498 SHA1 (shoot apical meristem arrest 1) Encodes SHA1 (shoot apical meristem arrest), a putative E3 ligase (a RING finger protein) required for post-embryonic SAM maintenance. The mutant sha1-1 shows a primary SAM-deficient phenotype at the adult stage. O.I. C.G. H.G.
16.3 99.5 90.5 At5g51820 835257 PGM (PHOSPHOGLUCOMUTASE) Encodes a plastid isoform of the enzyme phosphoglucomutase involved in controlling photosynthetic carbon flow. Effective petiole movement against the direction of the gravity requires functional PGM activity that is required for full development of amyloplasts. O.I. C.G. H.G.
14.4 99.4 39.6 At5g20935 832218 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BPO O.I. C.G. H.G.
14.3 99.4 324.4 At4g23600 828460 CORI3 (CORONATINE INDUCED 1) Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding. O.I. C.G. H.G.
13.6 99.4 63.6 At5g02940 831426 - F:unknown;P:unknown;C:chloroplast, chloroplast envelope;POB O.I. C.G. H.G.
13.5 99.4 148.3 At3g28220 822448 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:response to salt stress;C:vacuole, chloroplast envelope;PMO O.I. C.G. H.G.
13.3 99.4 60.1 At1g52000 841629 jacalin lectin family protein F:molecular_function unknown;P:response to salt stress;C:cellular_component unknown;BOMPFVA O.I. C.G. H.G.
13.0 99.4 103.1 At2g43100 818912 aconitase C-terminal domain-containing protein F:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOAFPM O.I. C.G. H.G.
12.7 99.3 85.5 At3g28290 822455 AT14A Encodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed. O.I. C.G. H.G.
12.0 99.3 40.6 At4g12830 826895 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:chloroplast;BOMPFA O.I. C.G. H.G.
11.2 99.2 50.4 At1g06830 837195 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB O.I. C.G. H.G.
11.0 99.2 97.5 At5g23660 832431 MTN3 (Arabidopsis homolog of Medicago truncatula MTN3) homolog of the Medicago nodulin MTN3 O.I. C.G. H.G.
11.0 99.2 81.4 At2g31790 817736 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
10.5 99.2 242.9 At4g17090 827419 CT-BMY (CHLOROPLAST BETA-AMYLASE) Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected). O.I. C.G. H.G.
10.2 99.2 10.6 At2g32290 817789 BAM6 (BETA-AMYLASE 6) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO O.I. C.G. H.G.
10.1 99.2 49.2 At1g03310 839531 isoamylase, putative / starch debranching enzyme, putative Encodes a protein with strong similarity to isoamylase (EC:3.2.1.68) however lacks critical residues known to be important for activity. Appears to co localize with ISA1 in the chloroplast isoamylase complex. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. It has been postulated that AtISA2 interacts with AtISA1 to form the Iso1 complex. O.I. C.G. H.G.
10.1 99.2 24.1 At3g03770 821164 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
10.0 99.2 260.8 At2g29630 817513 THIC (ThiaminC) Encodes a protein involved in thiamine biosynthesis. The protein is an iron-sulfur cluster protein predicted to catalyze the conversion of 5-aminoimidazole ribonucleotide (AIR) to hydroxymethylpyrimidine phosphate (HMP-P). A severe reduction of THIC levels in plants decreases vitamin B1 (thiamin diphosphate (TPP)) levels and also leads to changes in the levels of numerous other metabolites since so many primary metabolic enzymes require a TPP co-factor. thiC mutants are chlorotic and arrest in their development at the cotyledon stage. A N-terminal targeting sequence directs the THIC protein to the chloroplast stroma. The THIC transcript is regulated by a TPP riboswitch in the 3' UTR. THIC transcripts are observed in seedlings 5 or more days after germination, and light promotes the expression of this gene. O.I. C.G. H.G.
9.8 99.1 9.6 At4g13410 826972 ATCSLA15 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
9.7 99.1 50.0 At3g14650 820693 CYP72A11 putative cytochrome P450 O.I. C.G. H.G.
9.3 99.1 140.2 At4g14400 827085 ACD6 (ACCELERATED CELL DEATH 6) encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae. O.I. C.G. H.G.
9.3 99.1 48.1 At3g16910 820946 AAE7 (ACYL-ACTIVATING ENZYME 7) Encodes a peroxisomal protein with acetyl-CoA synthetase activity that is responsible for the activation of acetate for entry into the glyoxylate cycle. O.I. C.G. H.G.
9.3 99.1 19.2 At1g69523 843286 UbiE/COQ5 methyltransferase family protein F:methyltransferase activity;P:metabolic process;C:chloroplast;BOFAMP O.I. C.G. H.G.
9.2 99.1 109.7 At5g23240 832388 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV O.I. C.G. H.G.
9.2 99.1 55.6 At3g18890 821422 binding / catalytic/ coenzyme binding F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;MOFBPVA O.I. C.G. H.G.
9.1 99.1 48.7 At4g18240 827550 ATSS4 F:transferase activity, transferring glycosyl groups;P:starch metabolic process;C:chloroplast;MOBPFAV O.I. C.G. H.G.
9.0 99.1 105.8 At2g36835 818256 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;P O.I. C.G. H.G.
9.0 99.1 25.5 At1g16400 838210 CYP79F2 Encodes cytochrome P450 CYP79F2. O.I. C.G. H.G.
8.9 99.0 210.6 At4g34950 829647 nodulin family protein F:unknown;P:unknown;C:unknown;OBPFAM O.I. C.G. H.G.
8.9 99.0 199.4 At1g56190 842072 phosphoglycerate kinase, putative F:phosphoglycerate kinase activity;P:response to cadmium ion, glycolysis;C:thylakoid, mitochondrion, chloroplast stroma, chloroplast, membrane;OBPMAF O.I. C.G. H.G.
8.9 99.0 128.3 At1g74090 843749 SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18) encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates. O.I. C.G. H.G.
8.8 99.0 112.9 At5g62720 836393 integral membrane HPP family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast inner membrane, chloroplast envelope;OBFP O.I. C.G. H.G.
8.8 99.0 63.5 At4g38225 829979 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
64.0	99.8	72.8	At5g58310	835943	MES18 (METHYL ESTERASE 18)	Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
47.3	99.8	94.6	At4g16590	827360	ATCSLA01	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
34.5	99.7	156.3	At3g28270	822453	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMPOAFV	O.I.	C.G.	H.G.
20.8	99.6	118.7	At4g01080	827902	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
19.4	99.6	100.7	At4g12310	826840	CYP706A5	member of CYP706A	O.I.	C.G.	H.G.
16.7	99.5	141.2	At5g63780	836498	SHA1 (shoot apical meristem arrest 1)	Encodes SHA1 (shoot apical meristem arrest), a putative E3 ligase (a RING finger protein) required for post-embryonic SAM maintenance. The mutant sha1-1 shows a primary SAM-deficient phenotype at the adult stage.	O.I.	C.G.	H.G.
16.3	99.5	90.5	At5g51820	835257	PGM (PHOSPHOGLUCOMUTASE)	Encodes a plastid isoform of the enzyme phosphoglucomutase involved in controlling photosynthetic carbon flow. Effective petiole movement against the direction of the gravity requires functional PGM activity that is required for full development of amyloplasts.	O.I.	C.G.	H.G.
14.4	99.4	39.6	At5g20935	832218	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;BPO	O.I.	C.G.	H.G.
14.3	99.4	324.4	At4g23600	828460	CORI3 (CORONATINE INDUCED 1)	Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding.	O.I.	C.G.	H.G.
13.6	99.4	63.6	At5g02940	831426	-	F:unknown;P:unknown;C:chloroplast, chloroplast envelope;POB	O.I.	C.G.	H.G.
13.5	99.4	148.3	At3g28220	822448	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:response to salt stress;C:vacuole, chloroplast envelope;PMO	O.I.	C.G.	H.G.
13.3	99.4	60.1	At1g52000	841629	jacalin lectin family protein	F:molecular_function unknown;P:response to salt stress;C:cellular_component unknown;BOMPFVA	O.I.	C.G.	H.G.
13.0	99.4	103.1	At2g43100	818912	aconitase C-terminal domain-containing protein	F:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOAFPM	O.I.	C.G.	H.G.
12.7	99.3	85.5	At3g28290	822455	AT14A	Encodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed.	O.I.	C.G.	H.G.
12.0	99.3	40.6	At4g12830	826895	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:chloroplast;BOMPFA	O.I.	C.G.	H.G.
11.2	99.2	50.4	At1g06830	837195	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
11.0	99.2	97.5	At5g23660	832431	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	homolog of the Medicago nodulin MTN3	O.I.	C.G.	H.G.
11.0	99.2	81.4	At2g31790	817736	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
10.5	99.2	242.9	At4g17090	827419	CT-BMY (CHLOROPLAST BETA-AMYLASE)	Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).	O.I.	C.G.	H.G.
10.2	99.2	10.6	At2g32290	817789	BAM6 (BETA-AMYLASE 6)	F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO	O.I.	C.G.	H.G.
10.1	99.2	49.2	At1g03310	839531	isoamylase, putative / starch debranching enzyme, putative	Encodes a protein with strong similarity to isoamylase (EC:3.2.1.68) however lacks critical residues known to be important for activity. Appears to co localize with ISA1 in the chloroplast isoamylase complex. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. It has been postulated that AtISA2 interacts with AtISA1 to form the Iso1 complex.	O.I.	C.G.	H.G.
10.1	99.2	24.1	At3g03770	821164	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
10.0	99.2	260.8	At2g29630	817513	THIC (ThiaminC)	Encodes a protein involved in thiamine biosynthesis. The protein is an iron-sulfur cluster protein predicted to catalyze the conversion of 5-aminoimidazole ribonucleotide (AIR) to hydroxymethylpyrimidine phosphate (HMP-P). A severe reduction of THIC levels in plants decreases vitamin B1 (thiamin diphosphate (TPP)) levels and also leads to changes in the levels of numerous other metabolites since so many primary metabolic enzymes require a TPP co-factor. thiC mutants are chlorotic and arrest in their development at the cotyledon stage. A N-terminal targeting sequence directs the THIC protein to the chloroplast stroma. The THIC transcript is regulated by a TPP riboswitch in the 3' UTR. THIC transcripts are observed in seedlings 5 or more days after germination, and light promotes the expression of this gene.	O.I.	C.G.	H.G.
9.8	99.1	9.6	At4g13410	826972	ATCSLA15	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
9.7	99.1	50.0	At3g14650	820693	CYP72A11	putative cytochrome P450	O.I.	C.G.	H.G.
9.3	99.1	140.2	At4g14400	827085	ACD6 (ACCELERATED CELL DEATH 6)	encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.	O.I.	C.G.	H.G.
9.3	99.1	48.1	At3g16910	820946	AAE7 (ACYL-ACTIVATING ENZYME 7)	Encodes a peroxisomal protein with acetyl-CoA synthetase activity that is responsible for the activation of acetate for entry into the glyoxylate cycle.	O.I.	C.G.	H.G.
9.3	99.1	19.2	At1g69523	843286	UbiE/COQ5 methyltransferase family protein	F:methyltransferase activity;P:metabolic process;C:chloroplast;BOFAMP	O.I.	C.G.	H.G.
9.2	99.1	109.7	At5g23240	832388	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV	O.I.	C.G.	H.G.
9.2	99.1	55.6	At3g18890	821422	binding / catalytic/ coenzyme binding	F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;MOFBPVA	O.I.	C.G.	H.G.
9.1	99.1	48.7	At4g18240	827550	ATSS4	F:transferase activity, transferring glycosyl groups;P:starch metabolic process;C:chloroplast;MOBPFAV	O.I.	C.G.	H.G.
9.0	99.1	105.8	At2g36835	818256	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;P	O.I.	C.G.	H.G.
9.0	99.1	25.5	At1g16400	838210	CYP79F2	Encodes cytochrome P450 CYP79F2.	O.I.	C.G.	H.G.
8.9	99.0	210.6	At4g34950	829647	nodulin family protein	F:unknown;P:unknown;C:unknown;OBPFAM	O.I.	C.G.	H.G.
8.9	99.0	199.4	At1g56190	842072	phosphoglycerate kinase, putative	F:phosphoglycerate kinase activity;P:response to cadmium ion, glycolysis;C:thylakoid, mitochondrion, chloroplast stroma, chloroplast, membrane;OBPMAF	O.I.	C.G.	H.G.
8.9	99.0	128.3	At1g74090	843749	SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)	encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates.	O.I.	C.G.	H.G.
8.8	99.0	112.9	At5g62720	836393	integral membrane HPP family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast inner membrane, chloroplast envelope;OBFP	O.I.	C.G.	H.G.
8.8	99.0	63.5	At4g38225	829979	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-MEXP-739-raw-cel-1099467348
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-739-raw-cel-1099467348 GSE experiment -

GSM ID -

Assay name E-MEXP-739-raw-cel-1099467348

GSE experiment -