Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-MEXP-739-raw-cel-1099467285
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
70.399.9124.1At1g35230840412AGP5 (ARABINOGALACTAN-PROTEIN 5)Encodes arabinogalactan-protein (AGP5).O.I.C.G.H.G.
34.699.762.7At4g23150828414protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
34.499.7141.3At4g23140828413CRK6 (CYSTEINE-RICH RLK 6)Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.H.G.
33.899.777.5At2g32680817828AtRLP23 (Receptor Like Protein 23)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
29.799.7103.0At1g26380839180FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAMO.I.C.G.H.G.
27.599.721.2At1g21240838719WAK3 (wall associated kinase 3)encodes a wall-associated kinaseO.I.C.G.H.G.
25.599.7130.2At5g18470831965curculin-like (mannose-binding) lectin family proteinF:sugar binding;P:biological_process unknown;C:plant-type cell wall;PO.I.C.G.H.G.
24.499.628.3At2g04430814983atnudt5 (Arabidopsis thaliana Nudix hydrolase homolog 5)F:hydrolase activity;P:unknown;C:cytosol;BOMPAFVO.I.C.G.H.G.
24.199.652.3At5g25250832596-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPAVO.I.C.G.H.G.
23.799.651.7At1g33960840293AIG1 (AVRRPT2-INDUCED GENE 1)Identified as a gene that is induced by avirulence gene avrRpt2 and RPS2 after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2O.I.C.G.H.G.
21.799.689.3At2g30770817628CYP71A13 (cytochrome P450, family 71, subfamily A, polypeptide 13)putative cytochrome P450O.I.C.G.H.G.
20.799.627.1At5g16080831465AtCXE17 (Arabidopsis thaliana carboxyesterase 17)F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAVO.I.C.G.H.G.
20.699.642.0At4g03450827913ankyrin repeat family proteinF:protein binding;P:unknown;C:unknown;MOPFBVAO.I.C.G.H.G.
20.399.661.8At5g01540831722LECRKA4.1 (LECTIN RECEPTOR KINASE A4.1)Encodes LecRKA4.1, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.O.I.C.G.H.G.
19.999.634.8At5g64000836521SAL23'(2'),5'-bisphosphate nucleotidaseO.I.C.G.H.G.
19.999.67.9At4g30230829146unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
19.799.641.9At3g486503769688-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
18.999.570.7At2g35980818171YLS9 (YELLOW-LEAF-SPECIFIC GENE 9)Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast.O.I.C.G.H.G.
17.699.5115.9At2g37940818371-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPO.I.C.G.H.G.
17.599.534.0At1g78410844177VQ motif-containing proteinF:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;PO.I.C.G.H.G.
17.499.548.2At1g51890841616leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
17.299.553.1At2g29720817522CTF2BEncodes CTF2B.O.I.C.G.H.G.
17.099.532.0At1g77810844443galactosyltransferase family proteinF:transferase activity, transferring glycosyl groups, beta-1,3-galactosyltransferase activity;P:protein amino acid glycosylation;C:Golgi apparatus;MPOBO.I.C.G.H.G.
16.999.516.6At5g54720835561ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;PMOBFO.I.C.G.H.G.
16.899.554.1At4g13340826964leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;MBPOFVAO.I.C.G.H.G.
16.899.511.1At4g00970827936protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
16.599.557.9At4g11890826796protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
16.199.5200.2At2g43570818959chitinase, putativeF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMVO.I.C.G.H.G.
16.199.5195.9At2g18690816384unknown proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PBO.I.C.G.H.G.
16.199.597.9At3g57240824891BG3 (BETA-1,3-GLUCANASE 3)encodes a member of glycosyl hydrolase family 17O.I.C.G.H.G.
16.199.553.6At3g25610822148haloacid dehalogenase-like hydrolase family proteinF:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, phospholipid transport, ATP biosynthetic process;C:plasma membrane;MBOFPAVO.I.C.G.H.G.
15.999.5313.3At3g16530820901legume lectin family proteinLectin like protein whose expression is induced upon treatment with chitin oligomers.O.I.C.G.H.G.
15.999.5163.6At1g61800842477GPT2glucose6-Phosphate/phosphate transporter 2O.I.C.G.H.G.
15.699.513.7At5g46080834649protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
15.499.537.5At1g58420842211-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.499.527.1At2g42360818837zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
14.499.4205.4At2g24850817022TAT3 (TYROSINE AMINOTRANSFERASE 3)Encodes a tyrosine aminotransferase that is responsive to treatment with jasmonic acid.O.I.C.G.H.G.
14.499.458.2At5g52810835358ornithine cyclodeaminase/mu-crystallin family proteinF:structural constituent of eye lens, binding, catalytic activity;P:arginine catabolic process to glutamate, nopaline catabolic process, metabolic process, octopine catabolic process;C:chloroplast;BOMAFPO.I.C.G.H.G.
14.499.418.0At3g24090821995glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminaseF:sugar binding, transaminase activity, glutamine-fructose-6-phosphate transaminase (isomerizing) activity;P:carbohydrate biosynthetic process, carbohydrate metabolic process, metabolic process;C:cytoplasm;OBMAFPVO.I.C.G.H.G.
14.299.433.1At4g23220828421kinaseF:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
14.199.480.9At1g57630842139disease resistance protein (TIR class), putativeF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PO.I.C.G.H.G.
13.999.4180.7At5g24530832524DMR6 (DOWNY MILDEW RESISTANT 6)Encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew.O.I.C.G.H.G.
13.899.424.2At2g29120817460ATGLR2.7member of Putative ligand-gated ion channel subunit familyO.I.C.G.H.G.
13.799.425.4At5g58120835924disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAO.I.C.G.H.G.
13.699.46.6At1g33950840292avirulence-responsive family protein / avirulence induced gene (AIG1) family proteinF:GTP binding;P:response to bacterium;C:unknown;MOPBFVO.I.C.G.H.G.
13.599.416.9At4g39890830148AtRABH1c (Arabidopsis Rab GTPase homolog H1c)F:protein binding, GTP binding;P:protein transport, small GTPase mediated signal transduction;C:endomembrane system;MOFPBVAO.I.C.G.H.G.
13.499.418.8At5g01550831700LECRKA4.2 (LECTIN RECEPTOR KINASE A4.1)Encodes LecRKA4.2, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.O.I.C.G.H.G.
13.399.49.3At4g04510825781protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
13.299.4152.0At3g19010821434oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:flavonol synthase activity, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFMO.I.C.G.H.G.
13.199.4115.2At3g26830822298PAD3 (PHYTOALEXIN DEFICIENT 3)Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin.O.I.C.G.H.G.
13.099.424.6At1g76970844033VHS domain-containing protein / GAT domain-containing proteinF:protein transporter activity;P:intracellular protein transport, intra-Golgi vesicle-mediated transport;C:Golgi stack, intracellular;MFPOBO.I.C.G.H.G.
12.999.385.2At2g38290818409ATAMT2 (AMMONIUM TRANSPORTER 2)encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively.O.I.C.G.H.G.
12.399.3130.3At5g48380834892leucine-rich repeat family protein / protein kinase family proteinF:protein binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.C.G.H.G.
12.299.3287.3At3g57260824893BGL2 (BETA-1,3-GLUCANASE 2)beta 1,3-glucanaseO.I.C.G.H.G.
12.299.3187.4At3g50480824212HR4 (HOMOLOG OF RPW8 4)Homolog of RPW8O.I.C.G.H.G.
12.299.388.2At1g33600840254leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:cell wall, membrane, plant-type cell wall;PMBOFAVO.I.C.G.H.G.
12.299.361.3At1g74710843810isochorismate synthase 1 (ICS1) / isochorismate mutaseEncodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870).O.I.C.G.H.G.
12.299.359.9At1g02170839561AMC1 (METACASPASE 1)Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domainO.I.C.G.H.G.
12.299.349.2At3g47480823902calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOBO.I.C.G.H.G.
12.099.363.0At5g54860835577integral membrane transporter family proteinF:transporter activity;P:transport;C:endomembrane system, membrane;OPBMAFO.I.C.G.H.G.
11.999.379.7At1g35710840475leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
11.999.341.2At1g66090842923disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PBOMFO.I.C.G.H.G.
11.999.321.0At1g20350838623ATTIM17-1mitochondrial inner membrane translocaseO.I.C.G.H.G.
11.899.322.7At4g04490825779protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
11.899.37.5At3g24900822088AtRLP39 (Receptor Like Protein 39)F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
11.799.3188.8At4g34150829563C2 domain-containing proteinF:unknown;P:response to cold;C:unknown;MPFOBVAO.I.C.G.H.G.
11.799.351.2At1g30900839974vacuolar sorting receptor, putativeF:calcium ion binding;P:protein targeting to vacuole;C:integral to plasma membrane, Golgi transport complex;MOPBFAO.I.C.G.H.G.
11.699.3179.3At4g14365827080zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVAO.I.C.G.H.G.
11.699.3156.7At5g18600831978glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
11.599.338.6At5g61010836222ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.C.G.H.G.
11.599.323.3At1g51920841620unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
11.599.320.2At4g23610828461unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
11.499.325.5At1g26420839184FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAO.I.C.G.H.G.
11.299.250.3At1g06830837195glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOBO.I.C.G.H.G.
11.199.218.2At5g43910834413pfkB-type carbohydrate kinase family proteinF:kinase activity, ribokinase activity;P:D-ribose metabolic process;C:cellular_component unknown;BOMPAFO.I.C.G.H.G.
11.099.228.3At1g26390839181FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAMO.I.C.G.H.G.
11.099.224.5At3g25010822092AtRLP41 (Receptor Like Protein 41)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
10.999.222.8At3g02150821061PTF1 (PLASTID TRANSCRIPTION FACTOR 1)a chloroplast trans-acting factor of the psbD light-responsive promoter.TCP gene involved in heterochronic control of leaf differentiation.O.I.C.G.H.G.
10.899.252.1At3g09830820141protein kinase, putativeF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
10.899.226.2At4g39830830142L-ascorbate oxidase, putativeF:oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding;P:oxidation reduction;C:endomembrane system, extracellular region;BFPMOAO.I.C.G.H.G.
10.799.243.3At2g36630818235unknown proteinF:unknown;P:N-terminal protein myristoylation;C:endomembrane system, integral to membrane;BOPAO.I.C.G.H.G.
10.799.213.0At5g12930831133unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOABFO.I.C.G.H.G.
10.699.2198.1At5g10760830943aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFOO.I.C.G.H.G.
10.699.2181.2At3g12740820456ALIS1 (ALA-INTERACTING SUBUNIT 1)Physically interacts with ALA3, and is required for the phospholipid translocase activity of ALA3.O.I.C.G.H.G.
10.699.258.9At4g02330828064ATPMEPCRBF:pectinesterase activity;P:response to salt stress;C:endomembrane system, cell wall;PBFAOMO.I.C.G.H.G.
10.699.247.2At4g17720827493RNA recognition motif (RRM)-containing proteinF:oxidoreductase activity, nucleotide binding, nucleic acid binding;P:oxidation reduction;C:unknown;POFMBVAO.I.C.G.H.G.
10.599.273.4At4g39640830118GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1)The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast.O.I.C.G.H.G.
10.499.234.3At1g19300838512PARVUS (PARVUS)The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening, and parvus mutants have thinner cell walls.O.I.C.G.H.G.
10.499.225.9At1g74360843777leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:mitochondrion;MPOBFVAO.I.C.G.H.G.
10.499.215.6At4g18250827551receptor serine/threonine kinase, putativeF:transmembrane receptor protein serine/threonine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
10.399.2122.3At3g52400824405SYP122 (SYNTAXIN OF PLANTS 122)syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathwayO.I.C.G.H.G.
10.399.270.7At3g13330820533bindingF:binding;P:unknown;C:cellular_component unknown;FMOPO.I.C.G.H.G.
10.399.234.2At2g29990817549NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2)F:NADH dehydrogenase activity, oxidoreductase activity, FAD binding;P:unknown;C:intrinsic to mitochondrial inner membrane;BOFPAMO.I.C.G.H.G.
10.299.2235.5At2g31880817746leucine-rich repeat transmembrane protein kinase, putativeEncodes a putative leucine rich repeat transmembrane protein that is expressed in response to Pseudomonas syringae. Expression of SRRLK may be required for silencing via lsiRNAs.O.I.C.G.H.G.
10.299.221.8At1g09080837429BIP3F:ATP binding;P:protein folding, response to heat;C:endoplasmic reticulum lumen;OBMFPVAO.I.C.G.H.G.
10.199.2296.4At1g75040843842PR5 (PATHOGENESIS-RELATED GENE 5)Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment.O.I.C.G.H.G.
10.099.214.9At3g07520819940GLR1.4 (GLUTAMATE RECEPTOR 1.4)member of Putative ligand-gated ion channel subunit family. Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis.O.I.C.G.H.G.
9.999.146.4At1g66880843006serine/threonine protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
9.999.135.5At1g18890838470ATCDPK1 (CALCIUM-DEPENDENT PROTEIN KINASE 1)encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro.O.I.C.G.H.G.
9.999.124.0At4g14220827062RHF1A (RING-H2 GROUP F1A)encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. RHF1a can interact with the cell cycle inhibitor ICK4/KRP6 in vitro. It apppears to target ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF1a is expressed in the carpels throughout floral development. It is expressed in various tissues of the anthers during the early stages of anther development but not in stage 12 flowers and beyond.O.I.C.G.H.G.



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