Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-MEXP-728-raw-cel-1062074718
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
59.699.823.2At5g42230834228scpl41 (serine carboxypeptidase-like 41)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
51.499.822.9At3g59270825096syntaxin-related family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
46.199.8333.1At1g27540839645F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
40.899.8334.6At4g22490828344protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
36.099.740.8At1g29270839801unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
36.099.79.7At1g05370837038-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPMOO.I.C.G.H.G.
35.499.716.0At4g35900829744FDbZIP protein required for positive regulation of flowering. Mutants are late flowering. FD interacts with FT to promote flowering.Expressed in the shoot apex in floral anlagen, then declines in floral primordia.O.I.C.G.H.G.
31.899.739.1At3g13175820507unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
31.399.7223.3At5g08000830694E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3)Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and binds callose.O.I.C.G.H.G.
31.199.7291.3At1g62500842547protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;MBPOFVAO.I.C.G.H.G.
31.099.716.0At1g11730837717galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOO.I.C.G.H.G.
30.299.760.4At3g55510824716RBL (REBELOTE)F:unknown;P:floral meristem determinacy;C:nucleus;MFOPO.I.C.G.H.G.
29.399.742.8At5g03440831839unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
28.899.761.8At4g34400829590DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MOBFPVAO.I.C.G.H.G.
28.699.7100.2At4g37750829931ANT (AINTEGUMENTA)ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia.O.I.C.G.H.G.
28.299.735.5At5g64110836532peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:membrane;PFOBO.I.C.G.H.G.
28.299.715.0At1g13400837900NUB (NUBBIN)Along with JAG, it is involved in stamen and carpel development. Expression is limited to the adaxial side of lateral organs. Activated by AGAMOUS in a cal-1, ap1-1 background.O.I.C.G.H.G.
27.399.7116.2At1g44760841040universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:unknown;PMOO.I.C.G.H.G.
25.899.7182.4At2g26330817173ER (ERECTA)Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes.O.I.C.G.H.G.
25.499.620.9At1g22490838855basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
25.399.658.9At5g48360834889formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MPOFVBAO.I.C.G.H.G.
25.199.6102.0At5g28640832968AN3 (ANGUSTIFOLIA 3)Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors.O.I.C.G.H.G.
25.199.642.6At4g32980829435ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1)Encodes transcription factor involved in photomorphogenesis. Regulates gibberellin biosynthesis. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed at low levels in developing stamens. Increased levels of ATH1 severely delay flowering in the C24 accession. Most remarkably, ectopically expressed ATH1 hardly had an effect on flowering time in the Col-0 and Ler accessions. ATH1 physically interacts with STM, BP and KNAT6 and enhances the shoot apical meristem defect of some of these genes suggesting a role in SAM maintenance. Nuclear localization is dependent upon interaction with STM.O.I.C.G.H.G.
24.999.621.2At5g50010835065transcription factor/ transcription regulatorF:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
23.399.653.9At5g15360831388unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.699.616.4At3g18630821394uracil DNA glycosylase family proteinF:uracil DNA N-glycosylase activity;P:DNA repair, base-excision repair;C:chloroplast;BOVMFPO.I.C.G.H.G.
22.599.674.5At2g45190819127AFO (ABNORMAL FLORAL ORGANS)Encodes a member of the YABBY family of transcriptional regulators that is involved in abaxial cell type specification in leaves and fruits. YAB1 acts in a non-cell autonomous fashion within the meristem to affect phyllotactic patterning. The non-autonomous effect on the central region of the meristem is mediated through the activity if Lateral Suppressor (LAS).O.I.C.G.H.G.
22.499.651.4At1g02800839385ATCEL2Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.O.I.C.G.H.G.
22.399.682.8At2g43800818984formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MPFOBVAO.I.C.G.H.G.
22.099.660.8At1g27570839648phosphatidylinositol 3- and 4-kinase family proteinF:inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
21.999.619.5At1g68640843194PAN (PERIANTHIA)Encodes bZIP-transcription factor. Mutant plants have extra floral organs.O.I.C.G.H.G.
20.999.665.1At5g65410836666HB25 (HOMEOBOX PROTEIN 25)Encodes ZFHD2, a member of the zinc finger homeodomain transcriptional factor family.O.I.C.G.H.G.
20.899.610.7At5g49120834971senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OPFMBVO.I.C.G.H.G.
20.499.634.9At5g48820834940ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE)Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. Binds to D type and CDC2A cyclins and may inhibit cell cycle. Seven KRP genes were found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization.O.I.C.G.H.G.
20.299.6327.5At4g29030829024glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAO.I.C.G.H.G.
19.399.624.4At1g74890843828ARR15 (RESPONSE REGULATOR 15)Encodes a nuclear response regulator that acts as a negative regulator in cytokinin-mediated signal transduction. Transcript accumulates in leaves and roots in response to cytokinin treatment.O.I.C.G.H.G.
19.199.6132.3At5g10390830903histone H3F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPOO.I.C.G.H.G.
19.199.627.7At3g22790821850kinase interacting family proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAVO.I.C.G.H.G.
18.699.5182.3At5g07030830594aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:cell wall, plant-type cell wall;PMFOO.I.C.G.H.G.
18.499.520.4At1g16070838177AtTLP8 (TUBBY LIKE PROTEIN 8)Member of TLP familyO.I.C.G.H.G.
18.399.530.3At3g23295--O.I.C.G.H.G.
18.299.519.6At3g63300825505phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:unknown;OMPBFO.I.C.G.H.G.
18.199.535.0At5g19100832030extracellular dermal glycoprotein-related / EDGP-relatedF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PO.I.C.G.H.G.
17.999.5155.6At4g03060828102AOP2 (ALKENYL HYDROXALKYL PRODUCING 2)Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis.O.I.C.G.H.G.
17.699.549.2At5g46280834670DNA replication licensing factor, putativeF:nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding;P:DNA replication initiation, DNA replication;C:nucleus;MOFPABVO.I.C.G.H.G.
17.599.525.0At5g43500834370ATARP9 (ACTIN-RELATED PROTEIN 9)encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.O.I.C.G.H.G.
17.499.536.4At3g06220819796DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
17.499.520.2At1g63250842631DEAD box RNA helicase, putativeF:helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
17.299.520.1At4g27240828832zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PFOO.I.C.G.H.G.
17.299.515.2At5g44740834503POLH (Y-FAMILT DNA POLYMERASE H)Y-family DNA polymerase. Catalyses translesion synthesis in response to UV damage. Functionally interacts with PCNA2. Has a ubiquitin binding motif.O.I.C.G.H.G.
17.099.531.5At1g23000838908heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;OPMFBO.I.C.G.H.G.
16.999.574.8At5g24670832539catalytic/ hydrolase/ zinc ion bindingF:hydrolase activity, catalytic activity, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;BOFMPO.I.C.G.H.G.
16.899.553.6At1g54020841840myrosinase-associated protein, putativeF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuole;PBMO.I.C.G.H.G.
16.899.524.2At4g24540828556AGL24 (AGAMOUS-LIKE 24)Encodes a MADS-box protein involved in flowering. Regulates the expression of SOC1 and is also upregulated by SOC1. Binds with IMK3 kinase domain. Phosphorylated by IMK3; likely to be a target for IMK3 kinase domain.O.I.C.G.H.G.
16.799.534.4At3g04810819641ATNEK2 (NIMA-RELATED KINASE 2)Encodes AtNek2, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.O.I.C.G.H.G.
16.599.592.4At2g29570817506PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2)Functionally interacts with POLH to repair DNA damaged by UVB damage.O.I.C.G.H.G.
16.399.525.2At2g29890817539VLN1 (VILLIN-LIKE 1)Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization.O.I.C.G.H.G.
16.299.533.7At3g61830825356ARF18 (AUXIN RESPONSE FACTOR 18)F:transcription factor activity;P:response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMBAFOO.I.C.G.H.G.
16.199.520.7At3g60390825210HAT3 (HOMEOBOX-LEUCINE ZIPPER PROTEIN 3)Encodes homeobox protein HAT3.O.I.C.G.H.G.
16.099.546.8At5g61000836221replication protein, putativeF:DNA binding, nucleic acid binding;P:DNA replication;C:nucleus;PMOFAO.I.C.G.H.G.
15.999.557.5At3g23290821908--O.I.C.G.H.G.
15.999.516.9At3g47460823900ATSMC2member of SMC subfamilyO.I.C.G.H.G.
15.899.542.7At3g17680821035-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBFO.I.C.G.H.G.
15.799.5316.6At2g28790817428osmotin-like protein, putativeF:molecular_function unknown;P:response to other organism;C:plant-type cell wall;PFMBOO.I.C.G.H.G.
15.799.564.7At3g50070824169CYCD3Encode CYCD3;3, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development.O.I.C.G.H.G.
15.799.520.7At5g11550831027bindingF:binding;P:biological_process unknown;C:chloroplast;PMFOBVO.I.C.G.H.G.
15.599.5107.7At1g07790837293HTB1Encodes a histone 2B (H2B) protein.O.I.C.G.H.G.
15.599.531.4At3g13960820609AtGRF5 (GROWTH-REGULATING FACTOR 5)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower.O.I.C.G.H.G.
15.399.433.6At1g63160842620replication factor C 40 kDa, putativeF:in 6 functions;P:DNA replication;C:DNA replication factor C complex;BOMFAPVO.I.C.G.H.G.
15.399.419.2At5g66940836828Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POO.I.C.G.H.G.
15.399.415.9At4g11130826714RDR2 (RNA-DEPENDENT RNA POLYMERASE 2)Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004).O.I.C.G.H.G.
15.199.439.2At2g16780816179MSI2 (MULTICOPY SUPPRESSOR OF IRA1 2)Encodes a WD-40 repeat protein similar to yeast MSI1.O.I.C.G.H.G.
15.199.427.6At1g67630843086POLA2 (DNA POLYMERASE ALPHA 2)F:DNA binding, DNA-directed DNA polymerase activity;P:DNA replication;C:mitochondrion;MFOPO.I.C.G.H.G.
15.099.4119.7At3g53190824485pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFOO.I.C.G.H.G.
15.099.4117.4At5g67260836861CYCD3Encode CYCD3;2, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development.O.I.C.G.H.G.
15.099.4102.2At1g07370837249PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation.O.I.C.G.H.G.
15.099.477.2At2g19520816471FVEControls flowering.O.I.C.G.H.G.
15.099.427.1At5g62710836392leucine-rich repeat family protein / protein kinase family proteinF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
15.099.419.0At5g67100836845ICU2 (INCURVATA2)Encodes the putative catalytic subunit of the DNA polymerase alpha. Interacts with genes involved in chromatin-mediated cellular memory. ICU2 genetically interacts with TERMINAL FLOWER2, the ortholog of HETEROCHROMATIN PROTEIN1 of animals and yeasts, and with the Polycomb group (PcG) gene CURLY LEAF. A number of regulatory genes were derepressed in the icu2-1 mutant, including genes associated with flowering time, floral meristem, and floral organ identity. Mutant has curled, involute leaves and causes early flowering.O.I.C.G.H.G.
14.899.410.1At1g05470837048CVP2 (COTYLEDON VASCULAR PATTERN 2)Encodes an inositol polyphosphate 5' phosphatase (5PTase) that is required for the proper recruitment of cells into developing vascular tissue in leaves and cotyledons. It is most similar to Type I 5PTases that are known to cleave a phosphate from IP3 or IP4. cvp2 mutants have elevated levels of IP3 and are hypersensitive to ABA in seed germination assays.O.I.C.G.H.G.
14.799.449.7At4g28310828946unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
14.799.45.9At5g324603771028DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknownO.I.C.G.H.G.
14.699.418.2At4g39630830117unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.599.4300.4At5g65360836661histone H3F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPOO.I.C.G.H.G.
14.599.422.0At1g67040843024unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO.I.C.G.H.G.
14.499.45.7At1g24851839087unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPVO.I.C.G.H.G.
14.399.415.3At3g48710824032-F:unknown;P:unknown;C:unknown;MOBFPVAO.I.C.G.H.G.
14.299.438.0At5g56740835775HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2)Encodes an enzyme with histone acetyltransferase activity. Histone H4 is the primary substrate for the enzyme. Prior acetylation of lysine 12 of histone H4 reduces radioactive acetylation by HAG2. HAG2 acetylates histone H4 lysine 12.O.I.C.G.H.G.
14.299.412.9At5g45780834618leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
14.199.452.5At4g34160829564CYCD3encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1.O.I.C.G.H.G.
14.199.412.8At5g07660830659structural maintenance of chromosomes (SMC) family proteinF:protein binding, two-component sensor activity, ATP binding;P:signal transduction, chromosome segregation, chromosome organization;C:chromosome, nucleus, membrane;MOBFPAVO.I.C.G.H.G.
14.099.421.8At5g51600835234PLE (PLEIADE)Mutant has defective roots. Essential for giant cell ontogenesis. Role in organizing the mitotic microtubule array during both early and late mitosis in all plant organs.O.I.C.G.H.G.
13.899.450.9At1g53070841741legume lectin family proteinF:carbohydrate binding, sugar binding;P:biological_process unknown;C:cell wall, plant-type cell wall;PBOO.I.C.G.H.G.
13.899.414.9At1g31010839987OSB4 (organellar single-stranded DNA binding protein 4)F:single-stranded DNA binding;P:biological_process unknown;C:chloroplast;PBOO.I.C.G.H.G.
13.699.413.4At1g09450837468haspin-relatedF:protein kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;MFOPO.I.C.G.H.G.
13.599.49.8At3g27920822415ATMYB0 (MYB DOMAIN PROTEIN 0)Encodes a Myb-like protein that is required for induction of trichome development.O.I.C.G.H.G.
13.399.429.1At1g14440838006AtHB31 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31)F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PMOBFO.I.C.G.H.G.
13.399.428.8At2g07690815415minichromosome maintenance family protein / MCM family proteinMember of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.O.I.C.G.H.G.
13.399.418.1At1g26540839194agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:vacuole;PMOFBVO.I.C.G.H.G.
13.399.414.4At2g24650817001DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:apoplast;PMO.I.C.G.H.G.



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