Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-MEXP-728-raw-cel-1062074512
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
112.499.9299.6At2g42610818861LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
99.499.916.1At1g05370837038-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPMOO.I.C.G.H.G.
87.199.9134.5At3g23290821908--O.I.C.G.H.G.
58.699.8480.3At2g26400817180ATARD3 (ACIREDUCTONE DIOXYGENASE 3)Encodes a protein predicted to belong to the acireductone dioxygenase (ARD/ARDí)family.O.I.C.G.H.G.
58.099.853.9At3g23295--O.I.C.G.H.G.
50.999.829.9At3g04510819607LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMO.I.C.G.H.G.
49.299.856.9At3g15650820808phospholipase/carboxylesterase family proteinF:hydrolase activity, carboxylesterase activity;P:unknown;C:unknown;BOMFPAO.I.C.G.H.G.
42.199.8339.0At1g62500842547protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;MBPOFVAO.I.C.G.H.G.
41.899.8101.5At2g45190819127AFO (ABNORMAL FLORAL ORGANS)Encodes a member of the YABBY family of transcriptional regulators that is involved in abaxial cell type specification in leaves and fruits. YAB1 acts in a non-cell autonomous fashion within the meristem to affect phyllotactic patterning. The non-autonomous effect on the central region of the meristem is mediated through the activity if Lateral Suppressor (LAS).O.I.C.G.H.G.
41.399.8149.6At3g61310825303DNA-binding family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
40.899.8130.2At5g28640832968AN3 (ANGUSTIFOLIA 3)Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors.O.I.C.G.H.G.
37.199.738.6At2g31160817672LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3)F:molecular_function unknown;P:biological_process unknown;C:unknown;PMO.I.C.G.H.G.
36.999.7190.7At1g13710837932CYP78A5member of CYP78AO.I.C.G.H.G.
36.599.7241.1At5g08000830694E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3)Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and binds callose.O.I.C.G.H.G.
36.099.743.3At4g28950829016ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9)A member of ROP GTPase gene family.O.I.C.G.H.G.
34.599.7110.1At4g37750829931ANT (AINTEGUMENTA)ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia.O.I.C.G.H.G.
33.899.716.4At1g13400837900NUB (NUBBIN)Along with JAG, it is involved in stamen and carpel development. Expression is limited to the adaxial side of lateral organs. Activated by AGAMOUS in a cal-1, ap1-1 background.O.I.C.G.H.G.
32.499.7125.3At3g54820824647PIP2F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAVO.I.C.G.H.G.
31.799.726.2At1g10980837641-F:unknown;P:biological_process unknown;C:vacuole;MFPOO.I.C.G.H.G.
31.299.717.9At3g59270825096syntaxin-related family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
31.199.723.2At1g22490838855basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
30.299.7138.5At3g07320819920glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:plant-type cell wall;PFOO.I.C.G.H.G.
30.099.714.7At4g35900829744FDbZIP protein required for positive regulation of flowering. Mutants are late flowering. FD interacts with FT to promote flowering.Expressed in the shoot apex in floral anlagen, then declines in floral primordia.O.I.C.G.H.G.
29.699.721.4At1g52700841703phospholipase/carboxylesterase family proteinF:hydrolase activity, carboxylesterase activity;P:biological_process unknown;C:unknown;BOMFPAO.I.C.G.H.G.
29.299.731.9At4g24540828556AGL24 (AGAMOUS-LIKE 24)Encodes a MADS-box protein involved in flowering. Regulates the expression of SOC1 and is also upregulated by SOC1. Binds with IMK3 kinase domain. Phosphorylated by IMK3; likely to be a target for IMK3 kinase domain.O.I.C.G.H.G.
29.199.792.4At3g13510820553unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PFBO.I.C.G.H.G.
29.099.741.5At5g48820834940ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE)Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. Binds to D type and CDC2A cyclins and may inhibit cell cycle. Seven KRP genes were found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization.O.I.C.G.H.G.
28.399.784.9At1g03420838772transposable element geneMember of Sadhu non-coding retrotransposon familyO.I.C.G.H.G.
27.999.712.3At5g65510836677AIL7 (AINTEGUMENTA-like 7)F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBO.I.C.G.H.G.
27.699.760.4At4g34400829590DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MOBFPVAO.I.C.G.H.G.
27.499.758.4At5g15360831388unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
27.399.744.5At4g32980829435ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1)Encodes transcription factor involved in photomorphogenesis. Regulates gibberellin biosynthesis. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed at low levels in developing stamens. Increased levels of ATH1 severely delay flowering in the C24 accession. Most remarkably, ectopically expressed ATH1 hardly had an effect on flowering time in the Col-0 and Ler accessions. ATH1 physically interacts with STM, BP and KNAT6 and enhances the shoot apical meristem defect of some of these genes suggesting a role in SAM maintenance. Nuclear localization is dependent upon interaction with STM.O.I.C.G.H.G.
26.999.730.2At5g51600835234PLE (PLEIADE)Mutant has defective roots. Essential for giant cell ontogenesis. Role in organizing the mitotic microtubule array during both early and late mitosis in all plant organs.O.I.C.G.H.G.
26.499.756.4At3g55510824716RBL (REBELOTE)F:unknown;P:floral meristem determinacy;C:nucleus;MFOPO.I.C.G.H.G.
25.399.6479.0At5g03350831863legume lectin family proteinF:carbohydrate binding, sugar binding;P:biological_process unknown;C:apoplast, cell wall, chloroplast;PBOO.I.C.G.H.G.
25.299.6246.0At1g27540839645F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
24.899.627.8At5g45700834609NLI interacting factor (NIF) family proteinF:phosphatase activity;P:unknown;C:unknown;MOFPVBO.I.C.G.H.G.
24.399.616.1At4g21270827876ATK1 (ARABIDOPSIS THALIANA KINESIN 1)Encodes a kinesin-like motor protein heavy chain. Loss of function mutations have reduced fertility and are defective in spindle formation in male meiosis.O.I.C.G.H.G.
23.799.682.4At1g67830843109ATFXG1 (alpha-fucosidase 1)Encodes a protein with α-fucosidase activity. The activity was assessed on 2'-fucosyl-lactitol. AtFXG1 was able to remove the t-fucosyl residues of XXFG xyloglucan oligosaccharides.O.I.C.G.H.G.
22.699.637.9At3g13960820609AtGRF5 (GROWTH-REGULATING FACTOR 5)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower.O.I.C.G.H.G.
22.699.628.9At5g28490832941LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner.O.I.C.G.H.G.
22.299.617.2At2g45080819115cycp3F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:cellular_component unknown;FOMPBO.I.C.G.H.G.
22.099.646.4At3g02210821245COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR)F:unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
21.899.6103.9At1g44760841040universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:unknown;PMOO.I.C.G.H.G.
21.899.651.8At1g66250842942glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFOO.I.C.G.H.G.
21.699.681.6At2g43800818984formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MPFOBVAO.I.C.G.H.G.
21.699.640.2At2g42800818880AtRLP29 (Receptor Like Protein 29)F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFAO.I.C.G.H.G.
21.699.622.0At1g16070838177AtTLP8 (TUBBY LIKE PROTEIN 8)Member of TLP familyO.I.C.G.H.G.
21.499.613.3At1g11730837717galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOO.I.C.G.H.G.
21.099.649.3At3g17680821035-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBFO.I.C.G.H.G.
20.599.641.5At2g33860817956ETT (ETTIN)ettin (ett) mutations have pleiotropic effects on Arabidopsis flower development, causing increases in perianth organ number, decreases in stamen number and anther formation, and apical-basal patterning defects in the gynoecium. The ETTIN gene encodes a protein with homology to DNA binding proteins which bind to auxin response elements. ETT transcript is expressed throughout stage 1 floral meristems and subsequently resolves to a complex pattern within petal, stamen and carpel primordia. ETT probably functions to impart regional identity in floral meristems that affects perianth organ number spacing, stamen formation, and regional differentiation in stamens and the gynoecium. During stage 5, ETT expression appears in a ring at the top of the floral meristem before morphological appearance of the gynoecium, consistent with the proposal that ETT is involved in prepatterning apical and basal boundaries in the gynoecium primordium. It is a target of the ta-siRNA tasiR-ARF.O.I.C.G.H.G.
20.599.622.0At4g27240828832zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PFOO.I.C.G.H.G.
20.399.6150.9At4g38680830024GRP2 (GLYCINE RICH PROTEIN 2)Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development.O.I.C.G.H.G.
20.399.635.6At5g03440831839unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
19.899.620.7At1g59560842247ZCF61F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFBO.I.C.G.H.G.
19.499.659.1At3g23890821972TOPII (TOPOISOMERASE II)Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues.O.I.C.G.H.G.
19.199.6132.1At5g10390830903histone H3F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPOO.I.C.G.H.G.
19.099.515.1At3g18630821394uracil DNA glycosylase family proteinF:uracil DNA N-glycosylase activity;P:DNA repair, base-excision repair;C:chloroplast;BOVMFPO.I.C.G.H.G.
19.099.56.3At4g094803770265transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
18.699.586.7At1g02730839467ATCSLD5Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems.O.I.C.G.H.G.
18.199.555.3At3g14190820636unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
18.099.514.5At3g58770825046unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
17.999.518.0At5g50010835065transcription factor/ transcription regulatorF:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
17.899.576.8At1g75240843861AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33)F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PMOFBVO.I.C.G.H.G.
17.899.557.9At1g53070841741legume lectin family proteinF:carbohydrate binding, sugar binding;P:biological_process unknown;C:cell wall, plant-type cell wall;PBOO.I.C.G.H.G.
17.699.5335.3At2g28790817428osmotin-like protein, putativeF:molecular_function unknown;P:response to other organism;C:plant-type cell wall;PFMBOO.I.C.G.H.G.
17.699.5106.4At3g02640821289unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
17.699.545.6At1g02800839385ATCEL2Encodes a protein with similarity to endo-1,4-b-glucanases and is a member of Glycoside Hydrolase Family 9. CEL2 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.O.I.C.G.H.G.
17.699.516.5At1g72670843599iqd8 (IQ-domain 8)F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.C.G.H.G.
17.599.5262.0At5g55450835638protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:response to other organism, lipid transport;C:endomembrane system;PO.I.C.G.H.G.
17.399.518.4At4g14200827060unknown proteinF:unknown;P:biological_process unknown;C:unknown;MBOFPAO.I.C.G.H.G.
17.299.580.1At1g28110839704SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR)F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOBO.I.C.G.H.G.
17.199.512.4At5g42230834228scpl41 (serine carboxypeptidase-like 41)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
17.099.526.1At3g01410821319RNase H domain-containing proteinF:ribonuclease H activity, nuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;POBAMO.I.C.G.H.G.
16.799.558.3At5g65410836666HB25 (HOMEOBOX PROTEIN 25)Encodes ZFHD2, a member of the zinc finger homeodomain transcriptional factor family.O.I.C.G.H.G.
16.499.5179.0At1g18250838405ATLP-1encodes a thaumatin-like proteinO.I.C.G.H.G.
16.499.542.0At5g11930831066glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;PMBOO.I.C.G.H.G.
16.499.512.2At4g36270829784ATP bindingF:ATP binding;P:biological_process unknown;C:cellular_component unknown;MPOBO.I.C.G.H.G.
16.299.533.6At3g61830825356ARF18 (AUXIN RESPONSE FACTOR 18)F:transcription factor activity;P:response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMBAFOO.I.C.G.H.G.
16.299.512.7At3g02500821065unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
16.199.5292.2At4g29030829024glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAO.I.C.G.H.G.
16.199.557.1At1g62360842534STM (SHOOT MERISTEMLESS)Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia.O.I.C.G.H.G.
16.199.514.4At2g01210814649leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:chloroplast stroma, chloroplast, plasma membrane, plant-type cell wall;PMOBFVAO.I.C.G.H.G.
15.999.572.6At5g24670832539catalytic/ hydrolase/ zinc ion bindingF:hydrolase activity, catalytic activity, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;BOFMPO.I.C.G.H.G.
15.999.568.0At3g17840821053RLK902Encodes a receptor-like kinase found at the cell surface of various tissues. Its function remains unknown.O.I.C.G.H.G.
15.999.532.8At3g51280824291male sterility MS5, putativeF:binding;P:unknown;C:cellular_component unknown;OBPAFO.I.C.G.H.G.
15.899.541.1At2g22840816815AtGRF1 (GROWTH-REGULATING FACTOR 1)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flowerO.I.C.G.H.G.
15.899.533.8At1g18370838418HIK (HINKEL)Mutant has cytokinesis defects; seedling lethalO.I.C.G.H.G.
15.899.521.1At1g76310843964CYCB2core cell cycle genesO.I.C.G.H.G.
15.799.538.1At2g26180817158IQD6 (IQ-domain 6)F:calmodulin binding;P:unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
15.799.522.0At1g74890843828ARR15 (RESPONSE REGULATOR 15)Encodes a nuclear response regulator that acts as a negative regulator in cytokinin-mediated signal transduction. Transcript accumulates in leaves and roots in response to cytokinin treatment.O.I.C.G.H.G.
15.799.518.1At5g52860835363ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVO.I.C.G.H.G.
15.699.527.7At2g26760817217CYCB1F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVO.I.C.G.H.G.
15.499.541.3At4g16770827383iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:peroxisome;POBFMO.I.C.G.H.G.
15.399.475.1At5g65640836690bHLH093 (beta HLH protein 93)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
15.399.422.7At1g67040843024unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO.I.C.G.H.G.
15.299.4353.9At4g03210828024XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9)encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.O.I.C.G.H.G.
15.299.418.7At4g04630825795unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.199.436.9At5g37010833671unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;MOFBPVAO.I.C.G.H.G.
15.199.414.3At3g20150821558kinesin motor family proteinF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOFPBAVO.I.C.G.H.G.



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