CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-722-raw-cel-1062243183

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
75.4 99.9 45.6 At5g49350 3771473 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
67.9 99.9 163.3 At5g42600 834267 MRN1 (MARNERAL SYNTHASE) Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral. O.I. C.G. H.G.
66.9 99.8 45.3 At5g24140 832479 SQP2 Encodes a protein with similarity to squalene monoxygenases. O.I. C.G. H.G.
62.5 99.8 29.4 At1g78990 844239 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
57.9 99.8 128.1 At2g48130 819425 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;PBOM O.I. C.G. H.G.
54.9 99.8 93.5 At3g45710 823713 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMOFA O.I. C.G. H.G.
51.7 99.8 329.4 At1g21310 838728 ATEXT3 (EXTENSIN 3) Encodes extensin 3. O.I. C.G. H.G.
47.5 99.8 174.6 At5g48000 834851 CYP708A2 Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation. O.I. C.G. H.G.
46.8 99.8 218.4 At5g47990 834850 CYP705A5 encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings. O.I. C.G. H.G.
46.7 99.8 96.3 At5g37690 833748 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
44.4 99.8 88.8 At5g44550 834482 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
39.3 99.8 69.7 At4g28940 829015 catalytic F:catalytic activity;P:nucleoside metabolic process;C:endomembrane system;BPO O.I. C.G. H.G.
38.9 99.8 38.8 At1g53830 841820 ATPME2 encodes a pectin methylesterase O.I. C.G. H.G.
38.1 99.8 144.0 At5g48010 834852 THAS1 (THALIANOL SYNTHASE 1) Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism. O.I. C.G. H.G.
37.2 99.7 494.4 At4g12550 826868 AIR1 isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus. O.I. C.G. H.G.
35.4 99.7 209.8 At3g62680 825442 PRP3 (PROLINE-RICH PROTEIN 3) Proline-rich protein O.I. C.G. H.G.
35.0 99.7 276.3 At4g38080 829964 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOVBFA O.I. C.G. H.G.
33.4 99.7 105.6 At4g20390 827787 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
33.2 99.7 20.8 At1g03700 839428 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
32.8 99.7 171.0 At1g14960 838061 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
32.8 99.7 152.2 At5g06630 830551 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA O.I. C.G. H.G.
32.3 99.7 144.5 At1g23720 838982 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVA O.I. C.G. H.G.
32.1 99.7 48.7 At2g35380 818105 peroxidase 20 (PER20) (P20) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
31.9 99.7 96.4 At2g48140 819426 EDA4 (embryo sac development arrest 4) F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFV O.I. C.G. H.G.
31.3 99.7 33.4 At4g33730 829515 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
30.9 99.7 113.2 At1g74460 843787 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
30.5 99.7 63.3 At4g37060 829860 PLP5 (PATATIN-LIKE PROTEIN 5) F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF O.I. C.G. H.G.
29.1 99.7 86.5 At3g06390 819813 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
29.1 99.7 26.5 At5g19790 832099 RAP2.11 (related to AP2 11) encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family (RAP2.11). The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. O.I. C.G. H.G.
29.0 99.7 80.2 At4g40090 830172 AGP3 (arabinogalactan-protein 3) F:unknown;P:multicellular organismal development;C:endomembrane system;P O.I. C.G. H.G.
28.3 99.7 34.3 At5g42580 834265 CYP705A12 a member of the cytochrome P450 family O.I. C.G. H.G.
28.1 99.7 75.9 At5g23840 832449 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
27.4 99.7 49.0 At4g11210 826723 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
27.1 99.7 97.5 At2g38750 818457 ANNAT4 (ANNEXIN ARABIDOPSIS 4) Annexins are a family of calcium dependent membrane binding proteins though to be involved in Golgi mediated secretion. This is one of four annexins identified in Arabidopsis. O.I. C.G. H.G.
26.8 99.7 67.1 At5g35190 833473 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA O.I. C.G. H.G.
26.5 99.7 115.9 At4g33550 829494 lipid binding F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
26.0 99.7 174.5 At5g26260 832695 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POF O.I. C.G. H.G.
25.7 99.7 68.3 At5g13580 831202 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPV O.I. C.G. H.G.
24.3 99.6 101.9 At3g22570 821829 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
24.1 99.6 49.0 At1g34510 840353 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO O.I. C.G. H.G.
24.0 99.6 39.8 At4g24140 828514 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFAV O.I. C.G. H.G.
23.7 99.6 187.7 At3g54590 824624 ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN) Encodes a hydroxyproline-rich glycoprotein. O.I. C.G. H.G.
23.5 99.6 110.0 At5g04120 830290 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
23.2 99.6 14.1 At4g23510 828451 disease resistance protein (TIR class), putative F:transmembrane receptor activity;P:defense response signaling pathway, resistance gene-dependent, signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBO O.I. C.G. H.G.
23.1 99.6 16.6 At4g29180 829039 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
22.7 99.6 101.0 At4g11190 826721 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
22.2 99.6 136.1 At3g62040 825377 catalytic/ hydrolase F:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFA O.I. C.G. H.G.
21.8 99.6 113.8 At2g23540 816886 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
21.8 99.6 33.3 At1g66800 842998 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase O.I. C.G. H.G.
21.4 99.6 65.0 At5g42590 834266 CYP71A16 putative cytochrome P450 O.I. C.G. H.G.
21.1 99.6 174.3 At5g23830 832448 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
20.5 99.6 21.7 At3g45680 823710 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport, response to nematode;C:membrane;PBMOF O.I. C.G. H.G.
20.3 99.6 183.0 At3g29250 822580 copper ion binding / oxidoreductase F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV O.I. C.G. H.G.
20.2 99.6 21.1 At5g19800 832100 hydroxyproline-rich glycoprotein family protein F:unknown;P:biological_process unknown;C:endomembrane system;MPOFBVA O.I. C.G. H.G.
20.1 99.6 88.7 At1g17190 838290 ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
19.9 99.6 135.8 At2g24980 817037 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA O.I. C.G. H.G.
19.9 99.6 49.4 At1g08320 837353 bZIP family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF O.I. C.G. H.G.
19.8 99.6 59.6 At3g54580 824623 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVA O.I. C.G. H.G.
19.7 99.6 61.6 At2g22510 816784 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMBVFA O.I. C.G. H.G.
19.6 99.6 34.7 At5g22410 832302 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO O.I. C.G. H.G.
19.5 99.6 109.2 At4g25820 828687 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer. O.I. C.G. H.G.
19.3 99.6 16.3 At5g36140 833611 CYP716A2 member of CYP716A O.I. C.G. H.G.
19.2 99.6 20.4 At1g35330 840422 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
19.1 99.6 270.0 At3g53980 824565 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
18.8 99.5 44.8 At5g47980 834849 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
18.7 99.5 220.0 At3g20370 821582 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PMOF O.I. C.G. H.G.
18.5 99.5 74.5 At5g58860 836003 CYP86A1 (CYTOCHROME P450 86 A1) Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue. O.I. C.G. H.G.
18.4 99.5 176.2 At5g17820 831650 peroxidase 57 (PER57) (P57) (PRXR10) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall, membrane, plant-type cell wall;PFOM O.I. C.G. H.G.
18.4 99.5 69.7 At4g08410 826400 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVA O.I. C.G. H.G.
18.2 99.5 14.6 At1g08990 837420 PGSIP5 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 5) F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;PMFVBO O.I. C.G. H.G.
18.1 99.5 27.1 At2g47200 819333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
18.1 99.5 23.3 At1g35250 840414 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPA O.I. C.G. H.G.
18.1 99.5 13.8 At3g60280 825199 UCC3 (UCLACYANIN 3) Encodes blue copper-binding protein III. O.I. C.G. H.G.
18.0 99.5 113.1 At4g19690 827713 IRT1 (iron-regulated transporter 1) Fe(II) transport protein (IRT1) O.I. C.G. H.G.
18.0 99.5 62.8 At5g12420 831117 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF O.I. C.G. H.G.
17.9 99.5 58.9 At4g17280 827442 - F:unknown;P:multicellular organismal development;C:membrane;P O.I. C.G. H.G.
17.9 99.5 51.1 At5g42500 834257 disease resistance-responsive family protein F:molecular_function unknown;P:defense response;C:endomembrane system;P O.I. C.G. H.G.
17.7 99.5 30.1 At4g25250 828628 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PMO O.I. C.G. H.G.
17.6 99.5 203.1 At5g05960 830481 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
17.5 99.5 54.6 At2g01880 814719 PAP7 (PURPLE ACID PHOSPHATASE 7) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:endomembrane system;MOBPF O.I. C.G. H.G.
17.5 99.5 26.7 At3g45070 823642 sulfotransferase family protein F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MOPBF O.I. C.G. H.G.
17.4 99.5 20.8 At1g34670 840371 AtMYB93 (myb domain protein 93) Member of the R2R3 factor gene family. O.I. C.G. H.G.
17.3 99.5 44.1 At4g00680 828037 ADF8 (ACTIN DEPOLYMERIZING FACTOR 8) F:actin binding;P:biological_process unknown;C:intracellular;MPOFB O.I. C.G. H.G.
17.2 99.5 24.9 At1g49960 841419 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV O.I. C.G. H.G.
17.1 99.5 121.2 At2g16005 816096 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO O.I. C.G. H.G.
16.7 99.5 370.0 At1g70850 843422 MLP34 (MLP-LIKE PROTEIN 34) F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
16.7 99.5 16.3 At1g03410 838763 2A6 F:oxidoreductase activity;P:unknown;C:endomembrane system;POBFM O.I. C.G. H.G.
16.6 99.5 93.3 At5g09480 830807 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVA O.I. C.G. H.G.
16.3 99.5 46.1 At2g23620 816894 MES1 (METHYL ESTERASE 1) Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
16.2 99.5 50.4 At1g62980 842601 ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18) Alpha-expansin 18. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
16.1 99.5 119.4 At1g30870 839971 cationic peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM O.I. C.G. H.G.
16.0 99.5 264.8 At5g46890 834734 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
15.9 99.5 13.3 At5g57070 835811 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBVA O.I. C.G. H.G.
15.7 99.5 56.7 At1g54970 841938 ATPRP1 (PROLINE-RICH PROTEIN 1) encodes a proline-rich protein that is specifically expressed in the root. O.I. C.G. H.G.
15.7 99.5 6.8 At1g62320 842530 early-responsive to dehydration protein-related / ERD protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMO O.I. C.G. H.G.
15.5 99.5 97.1 At5g65210 836646 TGA1 F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POM O.I. C.G. H.G.
15.3 99.4 32.5 At1g10380 837577 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
15.2 99.4 231.1 At3g01420 821135 DOX1 Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid. O.I. C.G. H.G.
15.1 99.4 74.7 At2g41660 818764 MIZ1 (mizu-kussei 1) Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation. O.I. C.G. H.G.
15.1 99.4 66.6 At3g25930 822190 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
75.4	99.9	45.6	At5g49350	3771473	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
67.9	99.9	163.3	At5g42600	834267	MRN1 (MARNERAL SYNTHASE)	Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral.	O.I.	C.G.	H.G.
66.9	99.8	45.3	At5g24140	832479	SQP2	Encodes a protein with similarity to squalene monoxygenases.	O.I.	C.G.	H.G.
62.5	99.8	29.4	At1g78990	844239	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
57.9	99.8	128.1	At2g48130	819425	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;PBOM	O.I.	C.G.	H.G.
54.9	99.8	93.5	At3g45710	823713	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PBMOFA	O.I.	C.G.	H.G.
51.7	99.8	329.4	At1g21310	838728	ATEXT3 (EXTENSIN 3)	Encodes extensin 3.	O.I.	C.G.	H.G.
47.5	99.8	174.6	At5g48000	834851	CYP708A2	Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.	O.I.	C.G.	H.G.
46.8	99.8	218.4	At5g47990	834850	CYP705A5	encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings.	O.I.	C.G.	H.G.
46.7	99.8	96.3	At5g37690	833748	GDSL-motif lipase/hydrolase family protein	F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
44.4	99.8	88.8	At5g44550	834482	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
39.3	99.8	69.7	At4g28940	829015	catalytic	F:catalytic activity;P:nucleoside metabolic process;C:endomembrane system;BPO	O.I.	C.G.	H.G.
38.9	99.8	38.8	At1g53830	841820	ATPME2	encodes a pectin methylesterase	O.I.	C.G.	H.G.
38.1	99.8	144.0	At5g48010	834852	THAS1 (THALIANOL SYNTHASE 1)	Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism.	O.I.	C.G.	H.G.
37.2	99.7	494.4	At4g12550	826868	AIR1	isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus.	O.I.	C.G.	H.G.
35.4	99.7	209.8	At3g62680	825442	PRP3 (PROLINE-RICH PROTEIN 3)	Proline-rich protein	O.I.	C.G.	H.G.
35.0	99.7	276.3	At4g38080	829964	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOVBFA	O.I.	C.G.	H.G.
33.4	99.7	105.6	At4g20390	827787	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
33.2	99.7	20.8	At1g03700	839428	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
32.8	99.7	171.0	At1g14960	838061	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
32.8	99.7	152.2	At5g06630	830551	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA	O.I.	C.G.	H.G.
32.3	99.7	144.5	At1g23720	838982	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVA	O.I.	C.G.	H.G.
32.1	99.7	48.7	At2g35380	818105	peroxidase 20 (PER20) (P20)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
31.9	99.7	96.4	At2g48140	819426	EDA4 (embryo sac development arrest 4)	F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFV	O.I.	C.G.	H.G.
31.3	99.7	33.4	At4g33730	829515	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
30.9	99.7	113.2	At1g74460	843787	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
30.5	99.7	63.3	At4g37060	829860	PLP5 (PATATIN-LIKE PROTEIN 5)	F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF	O.I.	C.G.	H.G.
29.1	99.7	86.5	At3g06390	819813	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
29.1	99.7	26.5	At5g19790	832099	RAP2.11 (related to AP2 11)	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family (RAP2.11). The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	O.I.	C.G.	H.G.
29.0	99.7	80.2	At4g40090	830172	AGP3 (arabinogalactan-protein 3)	F:unknown;P:multicellular organismal development;C:endomembrane system;P	O.I.	C.G.	H.G.
28.3	99.7	34.3	At5g42580	834265	CYP705A12	a member of the cytochrome P450 family	O.I.	C.G.	H.G.
28.1	99.7	75.9	At5g23840	832449	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
27.4	99.7	49.0	At4g11210	826723	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
27.1	99.7	97.5	At2g38750	818457	ANNAT4 (ANNEXIN ARABIDOPSIS 4)	Annexins are a family of calcium dependent membrane binding proteins though to be involved in Golgi mediated secretion. This is one of four annexins identified in Arabidopsis.	O.I.	C.G.	H.G.
26.8	99.7	67.1	At5g35190	833473	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA	O.I.	C.G.	H.G.
26.5	99.7	115.9	At4g33550	829494	lipid binding	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
26.0	99.7	174.5	At5g26260	832695	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POF	O.I.	C.G.	H.G.
25.7	99.7	68.3	At5g13580	831202	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPV	O.I.	C.G.	H.G.
24.3	99.6	101.9	At3g22570	821829	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
24.1	99.6	49.0	At1g34510	840353	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO	O.I.	C.G.	H.G.
24.0	99.6	39.8	At4g24140	828514	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:endomembrane system;BOMPFAV	O.I.	C.G.	H.G.
23.7	99.6	187.7	At3g54590	824624	ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN)	Encodes a hydroxyproline-rich glycoprotein.	O.I.	C.G.	H.G.
23.5	99.6	110.0	At5g04120	830290	phosphoglycerate/bisphosphoglycerate mutase family protein	F:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
23.2	99.6	14.1	At4g23510	828451	disease resistance protein (TIR class), putative	F:transmembrane receptor activity;P:defense response signaling pathway, resistance gene-dependent, signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBO	O.I.	C.G.	H.G.
23.1	99.6	16.6	At4g29180	829039	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
22.7	99.6	101.0	At4g11190	826721	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
22.2	99.6	136.1	At3g62040	825377	catalytic/ hydrolase	F:hydrolase activity, catalytic activity;P:metabolic process;C:unknown;OBPFA	O.I.	C.G.	H.G.
21.8	99.6	113.8	At2g23540	816886	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
21.8	99.6	33.3	At1g66800	842998	cinnamyl-alcohol dehydrogenase family / CAD family	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase	O.I.	C.G.	H.G.
21.4	99.6	65.0	At5g42590	834266	CYP71A16	putative cytochrome P450	O.I.	C.G.	H.G.
21.1	99.6	174.3	At5g23830	832448	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
20.5	99.6	21.7	At3g45680	823710	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport, response to nematode;C:membrane;PBMOF	O.I.	C.G.	H.G.
20.3	99.6	183.0	At3g29250	822580	copper ion binding / oxidoreductase	F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV	O.I.	C.G.	H.G.
20.2	99.6	21.1	At5g19800	832100	hydroxyproline-rich glycoprotein family protein	F:unknown;P:biological_process unknown;C:endomembrane system;MPOFBVA	O.I.	C.G.	H.G.
20.1	99.6	88.7	At1g17190	838290	ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
19.9	99.6	135.8	At2g24980	817037	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVA	O.I.	C.G.	H.G.
19.9	99.6	49.4	At1g08320	837353	bZIP family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF	O.I.	C.G.	H.G.
19.8	99.6	59.6	At3g54580	824623	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVA	O.I.	C.G.	H.G.
19.7	99.6	61.6	At2g22510	816784	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMBVFA	O.I.	C.G.	H.G.
19.6	99.6	34.7	At5g22410	832302	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO	O.I.	C.G.	H.G.
19.5	99.6	109.2	At4g25820	828687	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer.	O.I.	C.G.	H.G.
19.3	99.6	16.3	At5g36140	833611	CYP716A2	member of CYP716A	O.I.	C.G.	H.G.
19.2	99.6	20.4	At1g35330	840422	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
19.1	99.6	270.0	At3g53980	824565	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
18.8	99.5	44.8	At5g47980	834849	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
18.7	99.5	220.0	At3g20370	821582	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;PMOF	O.I.	C.G.	H.G.
18.5	99.5	74.5	At5g58860	836003	CYP86A1 (CYTOCHROME P450 86 A1)	Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue.	O.I.	C.G.	H.G.
18.4	99.5	176.2	At5g17820	831650	peroxidase 57 (PER57) (P57) (PRXR10)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall, membrane, plant-type cell wall;PFOM	O.I.	C.G.	H.G.
18.4	99.5	69.7	At4g08410	826400	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVA	O.I.	C.G.	H.G.
18.2	99.5	14.6	At1g08990	837420	PGSIP5 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 5)	F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;PMFVBO	O.I.	C.G.	H.G.
18.1	99.5	27.1	At2g47200	819333	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.1	99.5	23.3	At1g35250	840414	thioesterase family protein	F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPA	O.I.	C.G.	H.G.
18.1	99.5	13.8	At3g60280	825199	UCC3 (UCLACYANIN 3)	Encodes blue copper-binding protein III.	O.I.	C.G.	H.G.
18.0	99.5	113.1	At4g19690	827713	IRT1 (iron-regulated transporter 1)	Fe(II) transport protein (IRT1)	O.I.	C.G.	H.G.
18.0	99.5	62.8	At5g12420	831117	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF	O.I.	C.G.	H.G.
17.9	99.5	58.9	At4g17280	827442	-	F:unknown;P:multicellular organismal development;C:membrane;P	O.I.	C.G.	H.G.
17.9	99.5	51.1	At5g42500	834257	disease resistance-responsive family protein	F:molecular_function unknown;P:defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
17.7	99.5	30.1	At4g25250	828628	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PMO	O.I.	C.G.	H.G.
17.6	99.5	203.1	At5g05960	830481	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
17.5	99.5	54.6	At2g01880	814719	PAP7 (PURPLE ACID PHOSPHATASE 7)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:endomembrane system;MOBPF	O.I.	C.G.	H.G.
17.5	99.5	26.7	At3g45070	823642	sulfotransferase family protein	F:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MOPBF	O.I.	C.G.	H.G.
17.4	99.5	20.8	At1g34670	840371	AtMYB93 (myb domain protein 93)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
17.3	99.5	44.1	At4g00680	828037	ADF8 (ACTIN DEPOLYMERIZING FACTOR 8)	F:actin binding;P:biological_process unknown;C:intracellular;MPOFB	O.I.	C.G.	H.G.
17.2	99.5	24.9	At1g49960	841419	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV	O.I.	C.G.	H.G.
17.1	99.5	121.2	At2g16005	816096	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO	O.I.	C.G.	H.G.
16.7	99.5	370.0	At1g70850	843422	MLP34 (MLP-LIKE PROTEIN 34)	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.7	99.5	16.3	At1g03410	838763	2A6	F:oxidoreductase activity;P:unknown;C:endomembrane system;POBFM	O.I.	C.G.	H.G.
16.6	99.5	93.3	At5g09480	830807	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVA	O.I.	C.G.	H.G.
16.3	99.5	46.1	At2g23620	816894	MES1 (METHYL ESTERASE 1)	Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
16.2	99.5	50.4	At1g62980	842601	ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18)	Alpha-expansin 18. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
16.1	99.5	119.4	At1g30870	839971	cationic peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM	O.I.	C.G.	H.G.
16.0	99.5	264.8	At5g46890	834734	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
15.9	99.5	13.3	At5g57070	835811	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBVA	O.I.	C.G.	H.G.
15.7	99.5	56.7	At1g54970	841938	ATPRP1 (PROLINE-RICH PROTEIN 1)	encodes a proline-rich protein that is specifically expressed in the root.	O.I.	C.G.	H.G.
15.7	99.5	6.8	At1g62320	842530	early-responsive to dehydration protein-related / ERD protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMO	O.I.	C.G.	H.G.
15.5	99.5	97.1	At5g65210	836646	TGA1	F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POM	O.I.	C.G.	H.G.
15.3	99.4	32.5	At1g10380	837577	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
15.2	99.4	231.1	At3g01420	821135	DOX1	Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid.	O.I.	C.G.	H.G.
15.1	99.4	74.7	At2g41660	818764	MIZ1 (mizu-kussei 1)	Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation.	O.I.	C.G.	H.G.
15.1	99.4	66.6	At3g25930	822190	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-MEXP-722-raw-cel-1062243183
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-722-raw-cel-1062243183 GSE experiment -

GSM ID -

Assay name E-MEXP-722-raw-cel-1062243183

GSE experiment -