Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-MEXP-715-raw-cel-1121836005
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
143.899.9159.0At5g53980835481ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.O.I.C.G.H.G.
126.299.9101.5At4g34770829629auxin-responsive family proteinF:unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
105.199.9437.8At2g23170816849GH3.3encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.O.I.C.G.H.G.
94.699.920.3At2g18010816313auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
74.099.936.5At3g28320822460-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
71.799.9170.8At4g16515827350unknown proteinF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
67.399.831.2At5g67020836837unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBO.I.C.G.H.G.
60.499.867.6At3g59900825160ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE)Encodes ARGOS (Auxin-Regulated Gene Involved in Organ Size). Inducible by auxin. Involved in lateral organ size control. Transgenic plants expressing sense or antisense ARGOS cDNA display enlarged or reduced aerial organs, respectively. The alteration in organ size is attributable mainly to changes in cell number and the duration of organ growth.O.I.C.G.H.G.
55.399.824.3At3g51410824304unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBFOO.I.C.G.H.G.
55.199.8183.0At5g02760831234protein phosphatase 2C family protein / PP2C family proteinF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBAVO.I.C.G.H.G.
54.499.8204.6At3g15540820793IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19)IAA induced protein 19O.I.C.G.H.G.
48.099.833.9At1g13430837903ST4C (SULFOTRANSFERASE 4C)Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiements show that this enzyme does not act brassinosteroids. ST4C is expressed in the roots and transcript levels rise in response to cytokinin treatment.O.I.C.G.H.G.
40.099.8194.7At4g27260828834WES1encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.O.I.C.G.H.G.
33.199.746.5At4g13790827013auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus, response to red light, response to far red light;C:unknown;POO.I.C.G.H.G.
31.499.762.2At4g34250829574KCS16 (3-KETOACYL-COA SYNTHASE 16)Encodes KCS16, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
30.099.7201.9At2g40610818656ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
29.399.7157.5At5g01210831901transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO.I.C.G.H.G.
29.299.7188.9At5g54510835539DFL1 (DWARF IN LIGHT 1)Encodes an IAA-amido synthase that conjugates Ala, Asp, Phe, and Trp to auxin. Lines overexpressing this gene accumulate IAA-ASP and are hypersensitive to several auxins. Identified as a dominant mutation that displays shorter hypocotyls in light grown plants when compared to wild type siblings. Protein is similar to auxin inducible gene from pea (GH3).O.I.C.G.H.G.
27.799.741.1At1g64460842754phosphatidylinositol 3- and 4-kinase family proteinF:inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor;P:biological_process unknown;C:vacuole;POMBO.I.C.G.H.G.
26.699.710.8At2g44570819065AtGH9B12 (Arabidopsis thaliana glycosyl hydrolase 9B12)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
26.299.7277.6At3g12610820441DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100)Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes.O.I.C.G.H.G.
26.299.740.4At1g09530837479PIF3 (PHYTOCHROME INTERACTING FACTOR 3)Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.O.I.C.G.H.G.
24.999.6107.2At5g15290831381integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.799.616.2At1g27670839659unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.699.6148.2At4g18970827632GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
24.399.640.1At5g57760835884unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.199.662.1At5g62280836349unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
23.199.638.9At4g32280829361IAA29 (INDOLE-3-ACETIC ACID INDUCIBLE 29)Auxin inducible protein.O.I.C.G.H.G.
22.999.634.6At3g14370820658WAG2The WAG2 and its homolog, WAG1 each encodes protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons.O.I.C.G.H.G.
21.899.6265.1At3g23050821879IAA7 (INDOLE-3-ACETIC ACID 7)Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.O.I.C.G.H.G.
21.899.67.2At1g29490839826auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
20.999.6102.1At1g67910843119unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
20.299.642.1At1g44830841047AP2 domain-containing transcription factor TINY, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
19.899.632.4At4g35720829724unknown proteinF:unknown;P:unknown;C:unknown;POO.I.C.G.H.G.
18.799.5106.2At5g12940831134leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAO.I.C.G.H.G.
17.899.511.0At3g53200824486AtMYB27 (myb domain protein 27)Member of the R2R3 factor gene family.O.I.C.G.H.G.
17.499.562.7At1g06080837117ADS1 (DELTA 9 DESATURASE 1)homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression down-regulated by cold temperature.O.I.C.G.H.G.
17.399.5606.8At3g16370820884GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:apoplast;PBFOMO.I.C.G.H.G.
17.299.5117.6At2g44080819014ARL (ARGOS-LIKE)Encodes ARL, a gene similar to ARGOS involved in cell expansion-dependent organ growth. Upregulated by brassinosteroid. Acts downstream of BRI1.O.I.C.G.H.G.
16.899.5135.8At5g48900834948pectate lyase family proteinF:lyase activity, pectate lyase activity;P:unknown;C:endomembrane system;PBFOO.I.C.G.H.G.
16.799.5367.7At1g03870839384FLA9 (FASCICLIN-LIKE ARABINOOGALACTAN 9)fasciclin-like arabinogalactan-protein 9 (Fla9)O.I.C.G.H.G.
16.499.573.6At1g59500842240GH3.4encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro.O.I.C.G.H.G.
15.799.5132.9At3g23030821877IAA2 (INDOLE-3-ACETIC ACID INDUCIBLE 2)auxin inducible gene expressed in the nucleusO.I.C.G.H.G.
15.699.5213.9At3g01470821138ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)Encodes a homeodomain leucine zipper class I (HD-Zip I) transcriptional activator involved in leaf development.O.I.C.G.H.G.
15.099.4181.8At2g21140816649ATPRP2 (PROLINE-RICH PROTEIN 2)Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques.O.I.C.G.H.G.
14.799.426.4At1g29440839820-F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
14.799.47.9At5g04190830297PKS4 (phytochrome kinase substrate 4)Encodes phytochrome kinase substrate 4, a phytochrome signaling component involved in phototropism.O.I.C.G.H.G.
14.399.446.2At1g29430839819auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
13.699.471.3At4g25830828688integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.399.468.2At2g39980818586transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO.I.C.G.H.G.
13.299.476.4At5g47370834784HAT2homeobox-leucine zipper genes induced by auxin, but not by other phytohormones. Plays opposite roles in the shoot and root tissues in regulating auxin-mediated morphogenesis.O.I.C.G.H.G.
13.099.4713.7At2g38530818435LTP2 (LIPID TRANSFER PROTEIN 2)Involved in lipid transfer between membranes. Belongs to a family of Lipid transfer proteins. Sequence similarity to other plant/Arabidopsis LPT genes but highest similarity to LPT1. Stress and pathogen-inducible motifs found in the upstream region. Expressed in flower, leaves and siliques but absent in roots. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
12.799.3143.6At2g43050818907ATPMEPCRDF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
12.599.319.6At1g15580838128IAA5 (INDOLE-3-ACETIC ACID INDUCIBLE 5)auxin induced proteinO.I.C.G.H.G.
12.199.3551.5At2g06850815247EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE)endoxyloglucan transferase (EXGT-A1) geneO.I.C.G.H.G.
12.199.3384.3At3g16390820886NSP3 (NITRILE SPECIFIER PROTEIN 3)Encodes a nitrile-specifier protein NSP3. NSP3 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.O.I.C.G.H.G.
12.199.388.1At4g30290829152XTH19 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19)putative xyloglucan endotransglycosylase/hydrolase, expressed throughout both the main and the lateral root, with intensive expression at the dividing and elongating regions. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow.O.I.C.G.H.G.
12.199.373.5At1g78100844146F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
12.099.3161.9At1g01120839395KCS1 (3-KETOACYL-COA SYNTHASE 1)Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis.O.I.C.G.H.G.
11.999.322.1At4g01680826853MYB55 (myb domain protein 55)Encodes a putative transcription factor (MYB55).O.I.C.G.H.G.
11.999.316.3At4g38850830040SAUR15 (SMALL AUXIN UPREGULATED 15)mRNA is rapidly induced by auxin and is very short-lived. Has been used as a reporter gene in studying auxin mutants.O.I.C.G.H.G.
11.699.361.0At4g25260828629invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:shade avoidance;C:endomembrane system;PO.I.C.G.H.G.
11.699.336.6At4g14560827103IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE)auxin (indole-3-acetic acid) induced gene (IAA1) encoding a short-lived nuclear-localized transcriptional regulator protein.O.I.C.G.H.G.
11.699.335.4At3g23880821971F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:nucleus;POO.I.C.G.H.G.
11.599.3111.0At3g02110821207scpl25 (serine carboxypeptidase-like 25)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOBO.I.C.G.H.G.
11.599.320.1At1g64470842755ubiquitin family proteinF:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPOFVBO.I.C.G.H.G.
11.599.313.0At3g42800823322unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPO.I.C.G.H.G.
11.499.3172.7At5g10430830907AGP4 (ARABINOGALACTAN PROTEIN 4)Encodes arabinogalactan-protein (AGP4).O.I.C.G.H.G.
11.299.254.7At3g12710820453methyladenine glycosylase family proteinF:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMO.I.C.G.H.G.
11.199.26.3At2g37030818278auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
10.999.264.8At3g48970824058copper-binding family proteinF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBOO.I.C.G.H.G.
10.999.230.4At1g29500839827auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:nucleolus, nucleus;PO.I.C.G.H.G.
10.899.278.1At1g29090839784peptidase C1A papain family proteinF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
10.799.2166.0At3g54400824606aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast, cell wall, chloroplast, plant-type cell wall;PMFOO.I.C.G.H.G.
10.699.234.4At1g71020843442armadillo/beta-catenin repeat family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;PMOFBVO.I.C.G.H.G.
10.599.217.7At4g37890829945EDA40 (embryo sac development arrest 40)F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:polar nucleus fusion;C:plasma membrane;PBOFMO.I.C.G.H.G.
10.399.226.7At1g25320839116leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.C.G.H.G.
10.199.221.4At2g38480818430integral membrane protein, putativeF:molecular_function unknown;P:biological_process unknown;C:plasma membrane, membrane;PO.I.C.G.H.G.
10.199.218.4At4g12410826850auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
10.099.291.9At5g48430834898aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PO.I.C.G.H.G.
9.999.1101.4At1g12080837760unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.C.G.H.G.
9.899.185.1At3g12920820477protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:nucleus;MPOVO.I.C.G.H.G.
9.899.162.4At1g21910838793AP2 domain-containing transcription factor family proteinencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
9.899.137.5At1g29510839828SAUR68 (SMALL AUXIN UPREGULATED 68)F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
9.799.134.1At5g18060831310auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
9.699.17.8At3g60550825226CYCP3F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPBO.I.C.G.H.G.
9.499.1371.2At4g29020829023glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAO.I.C.G.H.G.
9.299.115.9At1g17700838346PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1)F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMOFO.I.C.G.H.G.
8.999.020.8At1g52830841717IAA6 (INDOLE-3-ACETIC ACID 6)An extragenic dominant suppressor of the hy2 mutant phenotype. Also exhibits aspects of constitutive photomorphogenetic phenotype in the absence of hy2. Mutants have dominant leaf curling phenotype shortened hypocotyls and reduced apical hook. Induced by indole-3-acetic acid.O.I.C.G.H.G.
8.899.019.6At4g36110829768auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
8.799.051.1At2g41230818722unknown proteinF:unknown;P:biological_process unknown;C:unknown;PMO.I.C.G.H.G.
8.799.029.4At4g17350827447phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFOO.I.C.G.H.G.
8.799.07.1At3g03840821121auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.



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