CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-682-raw-cel-922397611

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
98.0 99.9 113.9 At4g34400 829590 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MOBFPVA O.I. C.G. H.G.
67.1 99.8 112.6 At1g53160 841749 SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4) Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. O.I. C.G. H.G.
66.9 99.8 166.7 At5g28640 832968 AN3 (ANGUSTIFOLIA 3) Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors. O.I. C.G. H.G.
63.5 99.8 32.5 At3g16490 820897 IQD26 (IQ-domain 26) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PFOM O.I. C.G. H.G.
52.8 99.8 62.9 At2g42800 818880 AtRLP29 (Receptor Like Protein 29) F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFA O.I. C.G. H.G.
49.8 99.8 57.2 At3g15650 820808 phospholipase/carboxylesterase family protein F:hydrolase activity, carboxylesterase activity;P:unknown;C:unknown;BOMFPA O.I. C.G. H.G.
43.9 99.8 46.2 At1g22030 838808 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
43.3 99.8 57.4 At3g06220 819796 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
39.9 99.8 22.5 At1g70510 843388 KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2) A member of class I knotted1-like homeobox gene family (together with KNAT1). Similar to the knotted1 (kn1) homeobox gene of maize. KNAT2 acts synergistically with cytokinins and antagonistically with ethylene based on ectopic expression studies in different mutant backgrounds and hormone treatments. In addition, KNAT2 is negatively regulated by AS and YABBY genes. KNAT2 is strongly expressed in the shoot apex of seedlings, while in mature plants the gene is primarily expressed in flowers and inflorescence stems. O.I. C.G. H.G.
38.1 99.8 42.8 At3g13175 820507 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
35.6 99.7 25.8 At3g26800 822294 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
34.5 99.7 47.1 At1g69780 843314 ATHB13 Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. O.I. C.G. H.G.
34.4 99.7 27.8 At1g16070 838177 AtTLP8 (TUBBY LIKE PROTEIN 8) Member of TLP family O.I. C.G. H.G.
33.3 99.7 7.6 At1g31040 839990 unknown protein F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
31.5 99.7 98.4 At2g43800 818984 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MPFOBVA O.I. C.G. H.G.
31.3 99.7 24.3 At1g23380 838946 KNAT6 homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants. O.I. C.G. H.G.
30.2 99.7 25.7 At3g63440 825519 CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6) This gene used to be called AtCKX7. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins. O.I. C.G. H.G.
30.1 99.7 172.1 At1g13710 837932 CYP78A5 member of CYP78A O.I. C.G. H.G.
29.7 99.7 49.9 At2g33860 817956 ETT (ETTIN) ettin (ett) mutations have pleiotropic effects on Arabidopsis flower development, causing increases in perianth organ number, decreases in stamen number and anther formation, and apical-basal patterning defects in the gynoecium. The ETTIN gene encodes a protein with homology to DNA binding proteins which bind to auxin response elements. ETT transcript is expressed throughout stage 1 floral meristems and subsequently resolves to a complex pattern within petal, stamen and carpel primordia. ETT probably functions to impart regional identity in floral meristems that affects perianth organ number spacing, stamen formation, and regional differentiation in stamens and the gynoecium. During stage 5, ETT expression appears in a ring at the top of the floral meristem before morphological appearance of the gynoecium, consistent with the proposal that ETT is involved in prepatterning apical and basal boundaries in the gynoecium primordium. It is a target of the ta-siRNA tasiR-ARF. O.I. C.G. H.G.
29.0 99.7 193.6 At2g26330 817173 ER (ERECTA) Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. O.I. C.G. H.G.
28.4 99.7 61.4 At2g42200 818820 SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9) Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expresssion is regulated by MIR156b. O.I. C.G. H.G.
27.9 99.7 113.2 At2g43520 818953 ATTI2 Encodes putative trypsin inhibitor protein which may function in defense against herbivory. Member of the defensin-like (DEFL) family. O.I. C.G. H.G.
27.5 99.7 9.4 At1g80100 844350 AHP6 (ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6) AHP6 lacks the conserved histidine residue (Asn83 in AHP6b), which is required for phosphotransfer, present in the other AHPs. AHP6 does not appear to have phosphotransfer activity. Acts as an inhibitor of cytokinin signaling by interacting with the phosphorelay machinery. Expressed in developing protoxylem and associated pericycle cell files. Negative regulator of cytokinin signaling. Expression is down-regulated by cytokinins. There are two alternatively spliced genes for this locus, AHP6a and AHP6b, differing in the length of the first exon. In ahp6-2 seedlings, only the AHP6a transcript is present. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6). O.I. C.G. H.G.
27.3 99.7 19.1 At1g02070 839270 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.2 99.7 20.5 At1g52700 841703 phospholipase/carboxylesterase family protein F:hydrolase activity, carboxylesterase activity;P:biological_process unknown;C:unknown;BOMFPA O.I. C.G. H.G.
26.8 99.7 52.6 At5g47600 834810 heat shock protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;PB O.I. C.G. H.G.
26.7 99.7 12.1 At5g49120 834971 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OPFMBV O.I. C.G. H.G.
26.2 99.7 70.8 At5g60910 836212 AGL8 (agamous-like 8) MADS box gene negatively regulated by APETALA1 O.I. C.G. H.G.
26.0 99.7 50.4 At3g02210 821245 COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
25.8 99.7 32.2 At2g31160 817672 LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3) F:molecular_function unknown;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
24.8 99.6 20.7 At1g22490 838855 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
24.8 99.6 18.3 At1g55200 841963 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
24.3 99.6 14.9 At4g31610 829288 REM1 (REPRODUCTIVE MERISTEM 1) Expressed specifically in reproductive meristems, member of a moderately sized gene family distantly related to known plant DNA binding proteins O.I. C.G. H.G.
24.1 99.6 107.9 At3g54820 824647 PIP2 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAV O.I. C.G. H.G.
23.6 99.6 88.3 At1g75240 843861 AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33) F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PMOFBV O.I. C.G. H.G.
23.6 99.6 16.6 At3g58770 825046 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
23.0 99.6 111.6 At3g61310 825303 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
22.9 99.6 38.4 At1g12430 837799 ARK3 (ARMADILLO REPEAT KINESIN 3) Encodes the kinesin-like protein PAK has an Armadillo motif tail and is involved in guard cell development in Arabidopsis (from Genbank record AF159052).However, no defect in stomatal complexes has been observed in loss of function mutations. O.I. C.G. H.G.
22.8 99.6 87.0 At5g44620 834490 CYP706A3 member of CYP706A O.I. C.G. H.G.
22.7 99.6 38.1 At5g53660 835447 AtGRF7 (GROWTH-REGULATING FACTOR 7) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower. O.I. C.G. H.G.
22.6 99.6 28.8 At1g69580 843294 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;POMB O.I. C.G. H.G.
22.5 99.6 14.4 At5g26790 832737 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
22.1 99.6 86.0 At4g08150 826364 KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA) A member of class I knotted1-like homeobox gene family (together with KNAT2). Similar to the knotted1 (kn1) homeobox gene of maize. Normally expressed in the peripheral and rib zone of shoot apical meristem but not in the leaf primordia. It is also expressed in the fourth floral whorl, in the region that would become style, particularly in the cell surrounding the transmitting tissue. No expression was detected in the first three floral whorls. Expression is repressed by auxin and AS1 which results in the promotion of leaf fate. O.I. C.G. H.G.
22.1 99.6 71.5 At5g43810 834403 ZLL (ZWILLE) Encodes a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo. O.I. C.G. H.G.
22.1 99.6 59.8 At3g51720 824335 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBPFAV O.I. C.G. H.G.
21.9 99.6 8.3 At3g15170 820748 CUC1 (CUP-SHAPED COTYLEDON1) Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). Cuc mutant was first recognized at the heart stage, where embryos lacking two distinct bulges of cotyledonary primordia were observed. O.I. C.G. H.G.
21.5 99.6 116.1 At2g33810 817948 SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3) Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. O.I. C.G. H.G.
21.5 99.6 54.3 At5g46280 834670 DNA replication licensing factor, putative F:nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding;P:DNA replication initiation, DNA replication;C:nucleus;MOFPABV O.I. C.G. H.G.
21.1 99.6 78.7 At3g13510 820553 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB O.I. C.G. H.G.
21.1 99.6 31.2 At3g25560 822143 NIK2 (NSP-INTERACTING KINASE 2) F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
21.1 99.6 27.1 At4g24540 828556 AGL24 (AGAMOUS-LIKE 24) Encodes a MADS-box protein involved in flowering. Regulates the expression of SOC1 and is also upregulated by SOC1. Binds with IMK3 kinase domain. Phosphorylated by IMK3; likely to be a target for IMK3 kinase domain. O.I. C.G. H.G.
21.1 99.6 24.0 At3g05470 819712 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:endomembrane system;MPOFVBA O.I. C.G. H.G.
21.0 99.6 65.5 At4g15830 827264 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
20.9 99.6 153.3 At4g38680 830024 GRP2 (GLYCINE RICH PROTEIN 2) Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development. O.I. C.G. H.G.
20.9 99.6 21.8 At3g13190 820509 myosin heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
20.7 99.6 64.9 At1g62360 842534 STM (SHOOT MERISTEMLESS) Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia. O.I. C.G. H.G.
20.7 99.6 31.9 At5g62710 836392 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
20.4 99.6 45.7 At1g65900 842902 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPAO O.I. C.G. H.G.
20.3 99.6 42.7 At5g37010 833671 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;MOFBPVA O.I. C.G. H.G.
20.3 99.6 39.9 At1g32190 840111 - F:unknown;P:N-terminal protein myristoylation;C:plasma membrane;MOBPFV O.I. C.G. H.G.
20.2 99.6 28.5 At3g22790 821850 kinase interacting family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV O.I. C.G. H.G.
20.0 99.6 40.0 At3g18960 821429 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
20.0 99.6 20.1 At4g30130 829136 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMF O.I. C.G. H.G.
19.9 99.6 37.0 At2g25270 817065 unknown protein F:unknown;P:unknown;C:plasma membrane;POBM O.I. C.G. H.G.
19.5 99.6 73.1 At2g39330 818518 JAL23 (JACALIN-RELATED LECTIN 23) F:molecular_function unknown;P:biological_process unknown;C:vacuole;POF O.I. C.G. H.G.
19.4 99.6 351.5 At2g28790 817428 osmotin-like protein, putative F:molecular_function unknown;P:response to other organism;C:plant-type cell wall;PFMBO O.I. C.G. H.G.
19.4 99.6 36.8 At3g61830 825356 ARF18 (AUXIN RESPONSE FACTOR 18) F:transcription factor activity;P:response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMBAFO O.I. C.G. H.G.
18.7 99.5 27.0 At5g48600 834917 ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3) member of SMC subfamily O.I. C.G. H.G.
18.6 99.5 22.5 At5g11550 831027 binding F:binding;P:biological_process unknown;C:chloroplast;PMFOBV O.I. C.G. H.G.
18.5 99.5 46.3 At3g17680 821035 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF O.I. C.G. H.G.
18.5 99.5 31.6 At1g78430 844179 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
18.4 99.5 46.7 At1g76540 843987 CDKB2 Encodes a cyclin-dependent protein kinase involved in regulation of the G2/M transition of the mitotic cell cycle. Specifically binds to the cyclin CYCD4;1, expressed in shoot meristem, young leaves and vascular tissue during the G2/M phase. Required for proper organization of the shoot apical meristem and for hormone signaling. O.I. C.G. H.G.
18.4 99.5 44.7 At3g07540 819943 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MOPFBV O.I. C.G. H.G.
18.3 99.5 34.8 At2g34650 818030 PID (PINOID) Encodes a protein serine/threonine kinase that may act as a positive regulator of cellular auxin efflux, as a a binary switch for PIN polarity, and as a negative regulator of auxin signaling. Recessive mutants exhibit similar phenotypes as pin-formed mutants in flowers and inflorescence but distinct phenotypes in cotyledons and leaves. Expressed in the vascular tissue proximal to root and shoot meristems, shoot apex, and embryos. Expression is induced by auxin. Overexpression of the gene results in phenotypes in the root and shoot similar to those found in auxin-insensitive mutants. The protein physically interacts with TCH3 (TOUCH3) and PID-BINDING PROTEIN 1 (PBP1), a previously uncharacterized protein containing putative EF-hand calcium-binding motifs. Acts together with ENP (ENHANCER OF PINOID) to instruct precursor cells to elaborate cotyledons in the transition stage embryo. Interacts with PDK1. PID autophosphorylation is required for the ability of PID to phosphorylate an exogenous substrate. PID activation loop is required for PDK1-dependent PID phosphorylation and requires the PIF domain. Negative regulator of root hair growth. PID kinase activity is critical for the inhibition of root hair growth and for maintaining the proper subcellular localization of PID. O.I. C.G. H.G.
18.1 99.5 94.5 At1g44760 841040 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:unknown;PMO O.I. C.G. H.G.
18.1 99.5 50.4 At5g12080 831081 MSL10 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10) F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:plasma membrane, membrane;BOFAP O.I. C.G. H.G.
18.1 99.5 30.7 At4g28950 829016 ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) A member of ROP GTPase gene family. O.I. C.G. H.G.
18.0 99.5 23.7 At5g45700 834609 NLI interacting factor (NIF) family protein F:phosphatase activity;P:unknown;C:unknown;MOFPVB O.I. C.G. H.G.
17.9 99.5 112.5 At1g43800 840977 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:membrane;PBOM O.I. C.G. H.G.
17.7 99.5 40.2 At5g13840 831230 FZR3 (FIZZY-RELATED 3) F:signal transducer activity;P:signal transduction;C:chloroplast, heterotrimeric G-protein complex;MFBOPA O.I. C.G. H.G.
17.5 99.5 26.2 At2g29890 817539 VLN1 (VILLIN-LIKE 1) Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization. O.I. C.G. H.G.
17.3 99.5 6.7 At1g05370 837038 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPMO O.I. C.G. H.G.
17.2 99.5 54.8 At2g27230 817265 LHW (LONESOME HIGHWAY) Encodes a nuclear-localized transcriptional activator with weak sequence similarity to basic helix-loop-helix(bHLH)-domain proteins. It promotes the production of stele cells in root meristems and is required to establish and maintain the normal vascular cell number and pattern in primary and lateral roots. O.I. C.G. H.G.
17.1 99.5 125.2 At5g67260 836861 CYCD3 Encode CYCD3;2, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development. O.I. C.G. H.G.
17.1 99.5 16.3 At1g72670 843599 iqd8 (IQ-domain 8) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
17.0 99.5 229.8 At5g48480 834903 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO O.I. C.G. H.G.
17.0 99.5 77.4 At4g37750 829931 ANT (AINTEGUMENTA) ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia. O.I. C.G. H.G.
17.0 99.5 19.2 At1g10980 837641 - F:unknown;P:biological_process unknown;C:vacuole;MFPO O.I. C.G. H.G.
16.9 99.5 38.0 At4g18975 827633 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
16.8 99.5 126.7 At3g53190 824485 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFO O.I. C.G. H.G.
16.7 99.5 297.3 At4g29030 829024 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA O.I. C.G. H.G.
16.7 99.5 17.1 At1g68640 843194 PAN (PERIANTHIA) Encodes bZIP-transcription factor. Mutant plants have extra floral organs. O.I. C.G. H.G.
16.6 99.5 33.6 At3g51280 824291 male sterility MS5, putative F:binding;P:unknown;C:cellular_component unknown;OBPAF O.I. C.G. H.G.
16.6 99.5 22.4 At3g57830 824952 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
16.5 99.5 94.3 At1g67750 843100 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO O.I. C.G. H.G.
16.5 99.5 42.6 At3g19590 821496 WD-40 repeat family protein / mitotic checkpoint protein, putative F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPA O.I. C.G. H.G.
16.5 99.5 36.0 At5g46570 834700 BSK2 (BR-SIGNALING KINASE 2) Encodes BR-signaling kinase 2 (BSK2), one of the three homologous BR-signaling kinases (BSK1, AT4G35230; BSK2, AT5G46570; BSK3, AT4G00710). Mediates signal transduction from receptor kinase BRI1 by functioning as the substrate of BRI1. Plasma membrane localized. O.I. C.G. H.G.
16.4 99.5 48.0 At1g24070 839019 ATCSLA10 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
16.4 99.5 6.3 At1g30950 839982 UFO (UNUSUAL FLORAL ORGANS) Required for the proper identity of the floral meristem. Involved in establishing the whorled pattern of floral organs, in the control of specification of the floral meristem, and in the activation of APETALA3 and PISTILLATA. UFO is found at the AP3 promoter in a LFY-dependent manner, suggesting that it works with LFY to regulate AP3 expression. UFO may also promote the ubiquitylation of LFY. O.I. C.G. H.G.
16.2 99.5 58.8 At5g51560 835230 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
98.0	99.9	113.9	At4g34400	829590	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MOBFPVA	O.I.	C.G.	H.G.
67.1	99.8	112.6	At1g53160	841749	SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4)	Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.	O.I.	C.G.	H.G.
66.9	99.8	166.7	At5g28640	832968	AN3 (ANGUSTIFOLIA 3)	Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors.	O.I.	C.G.	H.G.
63.5	99.8	32.5	At3g16490	820897	IQD26 (IQ-domain 26)	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PFOM	O.I.	C.G.	H.G.
52.8	99.8	62.9	At2g42800	818880	AtRLP29 (Receptor Like Protein 29)	F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFA	O.I.	C.G.	H.G.
49.8	99.8	57.2	At3g15650	820808	phospholipase/carboxylesterase family protein	F:hydrolase activity, carboxylesterase activity;P:unknown;C:unknown;BOMFPA	O.I.	C.G.	H.G.
43.9	99.8	46.2	At1g22030	838808	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
43.3	99.8	57.4	At3g06220	819796	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
39.9	99.8	22.5	At1g70510	843388	KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2)	A member of class I knotted1-like homeobox gene family (together with KNAT1). Similar to the knotted1 (kn1) homeobox gene of maize. KNAT2 acts synergistically with cytokinins and antagonistically with ethylene based on ectopic expression studies in different mutant backgrounds and hormone treatments. In addition, KNAT2 is negatively regulated by AS and YABBY genes. KNAT2 is strongly expressed in the shoot apex of seedlings, while in mature plants the gene is primarily expressed in flowers and inflorescence stems.	O.I.	C.G.	H.G.
38.1	99.8	42.8	At3g13175	820507	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
35.6	99.7	25.8	At3g26800	822294	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
34.5	99.7	47.1	At1g69780	843314	ATHB13	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	O.I.	C.G.	H.G.
34.4	99.7	27.8	At1g16070	838177	AtTLP8 (TUBBY LIKE PROTEIN 8)	Member of TLP family	O.I.	C.G.	H.G.
33.3	99.7	7.6	At1g31040	839990	unknown protein	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
31.5	99.7	98.4	At2g43800	818984	formin homology 2 domain-containing protein / FH2 domain-containing protein	F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MPFOBVA	O.I.	C.G.	H.G.
31.3	99.7	24.3	At1g23380	838946	KNAT6	homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants.	O.I.	C.G.	H.G.
30.2	99.7	25.7	At3g63440	825519	CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6)	This gene used to be called AtCKX7. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.	O.I.	C.G.	H.G.
30.1	99.7	172.1	At1g13710	837932	CYP78A5	member of CYP78A	O.I.	C.G.	H.G.
29.7	99.7	49.9	At2g33860	817956	ETT (ETTIN)	ettin (ett) mutations have pleiotropic effects on Arabidopsis flower development, causing increases in perianth organ number, decreases in stamen number and anther formation, and apical-basal patterning defects in the gynoecium. The ETTIN gene encodes a protein with homology to DNA binding proteins which bind to auxin response elements. ETT transcript is expressed throughout stage 1 floral meristems and subsequently resolves to a complex pattern within petal, stamen and carpel primordia. ETT probably functions to impart regional identity in floral meristems that affects perianth organ number spacing, stamen formation, and regional differentiation in stamens and the gynoecium. During stage 5, ETT expression appears in a ring at the top of the floral meristem before morphological appearance of the gynoecium, consistent with the proposal that ETT is involved in prepatterning apical and basal boundaries in the gynoecium primordium. It is a target of the ta-siRNA tasiR-ARF.	O.I.	C.G.	H.G.
29.0	99.7	193.6	At2g26330	817173	ER (ERECTA)	Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes.	O.I.	C.G.	H.G.
28.4	99.7	61.4	At2g42200	818820	SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9)	Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expresssion is regulated by MIR156b.	O.I.	C.G.	H.G.
27.9	99.7	113.2	At2g43520	818953	ATTI2	Encodes putative trypsin inhibitor protein which may function in defense against herbivory. Member of the defensin-like (DEFL) family.	O.I.	C.G.	H.G.
27.5	99.7	9.4	At1g80100	844350	AHP6 (ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6)	AHP6 lacks the conserved histidine residue (Asn83 in AHP6b), which is required for phosphotransfer, present in the other AHPs. AHP6 does not appear to have phosphotransfer activity. Acts as an inhibitor of cytokinin signaling by interacting with the phosphorelay machinery. Expressed in developing protoxylem and associated pericycle cell files. Negative regulator of cytokinin signaling. Expression is down-regulated by cytokinins. There are two alternatively spliced genes for this locus, AHP6a and AHP6b, differing in the length of the first exon. In ahp6-2 seedlings, only the AHP6a transcript is present. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	O.I.	C.G.	H.G.
27.3	99.7	19.1	At1g02070	839270	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.2	99.7	20.5	At1g52700	841703	phospholipase/carboxylesterase family protein	F:hydrolase activity, carboxylesterase activity;P:biological_process unknown;C:unknown;BOMFPA	O.I.	C.G.	H.G.
26.8	99.7	52.6	At5g47600	834810	heat shock protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;PB	O.I.	C.G.	H.G.
26.7	99.7	12.1	At5g49120	834971	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OPFMBV	O.I.	C.G.	H.G.
26.2	99.7	70.8	At5g60910	836212	AGL8 (agamous-like 8)	MADS box gene negatively regulated by APETALA1	O.I.	C.G.	H.G.
26.0	99.7	50.4	At3g02210	821245	COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR)	F:unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
25.8	99.7	32.2	At2g31160	817672	LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3)	F:molecular_function unknown;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
24.8	99.6	20.7	At1g22490	838855	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
24.8	99.6	18.3	At1g55200	841963	protein kinase family protein	F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
24.3	99.6	14.9	At4g31610	829288	REM1 (REPRODUCTIVE MERISTEM 1)	Expressed specifically in reproductive meristems, member of a moderately sized gene family distantly related to known plant DNA binding proteins	O.I.	C.G.	H.G.
24.1	99.6	107.9	At3g54820	824647	PIP2	F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAV	O.I.	C.G.	H.G.
23.6	99.6	88.3	At1g75240	843861	AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PMOFBV	O.I.	C.G.	H.G.
23.6	99.6	16.6	At3g58770	825046	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
23.0	99.6	111.6	At3g61310	825303	DNA-binding family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
22.9	99.6	38.4	At1g12430	837799	ARK3 (ARMADILLO REPEAT KINESIN 3)	Encodes the kinesin-like protein PAK has an Armadillo motif tail and is involved in guard cell development in Arabidopsis (from Genbank record AF159052).However, no defect in stomatal complexes has been observed in loss of function mutations.	O.I.	C.G.	H.G.
22.8	99.6	87.0	At5g44620	834490	CYP706A3	member of CYP706A	O.I.	C.G.	H.G.
22.7	99.6	38.1	At5g53660	835447	AtGRF7 (GROWTH-REGULATING FACTOR 7)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.	O.I.	C.G.	H.G.
22.6	99.6	28.8	At1g69580	843294	transcription factor	F:transcription factor activity;P:regulation of transcription;C:unknown;POMB	O.I.	C.G.	H.G.
22.5	99.6	14.4	At5g26790	832737	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.1	99.6	86.0	At4g08150	826364	KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)	A member of class I knotted1-like homeobox gene family (together with KNAT2). Similar to the knotted1 (kn1) homeobox gene of maize. Normally expressed in the peripheral and rib zone of shoot apical meristem but not in the leaf primordia. It is also expressed in the fourth floral whorl, in the region that would become style, particularly in the cell surrounding the transmitting tissue. No expression was detected in the first three floral whorls. Expression is repressed by auxin and AS1 which results in the promotion of leaf fate.	O.I.	C.G.	H.G.
22.1	99.6	71.5	At5g43810	834403	ZLL (ZWILLE)	Encodes a member of the EIF2C (elongation initiation factor 2c)/ Argonaute class of proteins. Required to establish the central-peripheral organization of the embryo apex. Along with WUS and CLV genes, controls the relative organization of central zone and peripheral zone cells in meristems. Acts in embryonic provascular tissue potentiating WUSCHEL function during meristem development in the embryo.	O.I.	C.G.	H.G.
22.1	99.6	59.8	At3g51720	824335	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBPFAV	O.I.	C.G.	H.G.
21.9	99.6	8.3	At3g15170	820748	CUC1 (CUP-SHAPED COTYLEDON1)	Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). Cuc mutant was first recognized at the heart stage, where embryos lacking two distinct bulges of cotyledonary primordia were observed.	O.I.	C.G.	H.G.
21.5	99.6	116.1	At2g33810	817948	SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)	Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.	O.I.	C.G.	H.G.
21.5	99.6	54.3	At5g46280	834670	DNA replication licensing factor, putative	F:nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding;P:DNA replication initiation, DNA replication;C:nucleus;MOFPABV	O.I.	C.G.	H.G.
21.1	99.6	78.7	At3g13510	820553	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PFB	O.I.	C.G.	H.G.
21.1	99.6	31.2	At3g25560	822143	NIK2 (NSP-INTERACTING KINASE 2)	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
21.1	99.6	27.1	At4g24540	828556	AGL24 (AGAMOUS-LIKE 24)	Encodes a MADS-box protein involved in flowering. Regulates the expression of SOC1 and is also upregulated by SOC1. Binds with IMK3 kinase domain. Phosphorylated by IMK3; likely to be a target for IMK3 kinase domain.	O.I.	C.G.	H.G.
21.1	99.6	24.0	At3g05470	819712	formin homology 2 domain-containing protein / FH2 domain-containing protein	F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:endomembrane system;MPOFVBA	O.I.	C.G.	H.G.
21.0	99.6	65.5	At4g15830	827264	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
20.9	99.6	153.3	At4g38680	830024	GRP2 (GLYCINE RICH PROTEIN 2)	Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development.	O.I.	C.G.	H.G.
20.9	99.6	21.8	At3g13190	820509	myosin heavy chain-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
20.7	99.6	64.9	At1g62360	842534	STM (SHOOT MERISTEMLESS)	Class I knotted-like homeodomain protein that is required for shoot apical meristem (SAM) formation during embryogenesis and for SAM function throughout the lifetime of the plant. Functions by preventing incorporation of cells in the meristem center into differentiating organ primordia.	O.I.	C.G.	H.G.
20.7	99.6	31.9	At5g62710	836392	leucine-rich repeat family protein / protein kinase family protein	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
20.4	99.6	45.7	At1g65900	842902	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPAO	O.I.	C.G.	H.G.
20.3	99.6	42.7	At5g37010	833671	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
20.3	99.6	39.9	At1g32190	840111	-	F:unknown;P:N-terminal protein myristoylation;C:plasma membrane;MOBPFV	O.I.	C.G.	H.G.
20.2	99.6	28.5	At3g22790	821850	kinase interacting family protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV	O.I.	C.G.	H.G.
20.0	99.6	40.0	At3g18960	821429	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.0	99.6	20.1	At4g30130	829136	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMF	O.I.	C.G.	H.G.
19.9	99.6	37.0	At2g25270	817065	unknown protein	F:unknown;P:unknown;C:plasma membrane;POBM	O.I.	C.G.	H.G.
19.5	99.6	73.1	At2g39330	818518	JAL23 (JACALIN-RELATED LECTIN 23)	F:molecular_function unknown;P:biological_process unknown;C:vacuole;POF	O.I.	C.G.	H.G.
19.4	99.6	351.5	At2g28790	817428	osmotin-like protein, putative	F:molecular_function unknown;P:response to other organism;C:plant-type cell wall;PFMBO	O.I.	C.G.	H.G.
19.4	99.6	36.8	At3g61830	825356	ARF18 (AUXIN RESPONSE FACTOR 18)	F:transcription factor activity;P:response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMBAFO	O.I.	C.G.	H.G.
18.7	99.5	27.0	At5g48600	834917	ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3)	member of SMC subfamily	O.I.	C.G.	H.G.
18.6	99.5	22.5	At5g11550	831027	binding	F:binding;P:biological_process unknown;C:chloroplast;PMFOBV	O.I.	C.G.	H.G.
18.5	99.5	46.3	At3g17680	821035	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF	O.I.	C.G.	H.G.
18.5	99.5	31.6	At1g78430	844179	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
18.4	99.5	46.7	At1g76540	843987	CDKB2	Encodes a cyclin-dependent protein kinase involved in regulation of the G2/M transition of the mitotic cell cycle. Specifically binds to the cyclin CYCD4;1, expressed in shoot meristem, young leaves and vascular tissue during the G2/M phase. Required for proper organization of the shoot apical meristem and for hormone signaling.	O.I.	C.G.	H.G.
18.4	99.5	44.7	At3g07540	819943	formin homology 2 domain-containing protein / FH2 domain-containing protein	F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MOPFBV	O.I.	C.G.	H.G.
18.3	99.5	34.8	At2g34650	818030	PID (PINOID)	Encodes a protein serine/threonine kinase that may act as a positive regulator of cellular auxin efflux, as a a binary switch for PIN polarity, and as a negative regulator of auxin signaling. Recessive mutants exhibit similar phenotypes as pin-formed mutants in flowers and inflorescence but distinct phenotypes in cotyledons and leaves. Expressed in the vascular tissue proximal to root and shoot meristems, shoot apex, and embryos. Expression is induced by auxin. Overexpression of the gene results in phenotypes in the root and shoot similar to those found in auxin-insensitive mutants. The protein physically interacts with TCH3 (TOUCH3) and PID-BINDING PROTEIN 1 (PBP1), a previously uncharacterized protein containing putative EF-hand calcium-binding motifs. Acts together with ENP (ENHANCER OF PINOID) to instruct precursor cells to elaborate cotyledons in the transition stage embryo. Interacts with PDK1. PID autophosphorylation is required for the ability of PID to phosphorylate an exogenous substrate. PID activation loop is required for PDK1-dependent PID phosphorylation and requires the PIF domain. Negative regulator of root hair growth. PID kinase activity is critical for the inhibition of root hair growth and for maintaining the proper subcellular localization of PID.	O.I.	C.G.	H.G.
18.1	99.5	94.5	At1g44760	841040	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:unknown;PMO	O.I.	C.G.	H.G.
18.1	99.5	50.4	At5g12080	831081	MSL10 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10)	F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:plasma membrane, membrane;BOFAP	O.I.	C.G.	H.G.
18.1	99.5	30.7	At4g28950	829016	ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9)	A member of ROP GTPase gene family.	O.I.	C.G.	H.G.
18.0	99.5	23.7	At5g45700	834609	NLI interacting factor (NIF) family protein	F:phosphatase activity;P:unknown;C:unknown;MOFPVB	O.I.	C.G.	H.G.
17.9	99.5	112.5	At1g43800	840977	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:membrane;PBOM	O.I.	C.G.	H.G.
17.7	99.5	40.2	At5g13840	831230	FZR3 (FIZZY-RELATED 3)	F:signal transducer activity;P:signal transduction;C:chloroplast, heterotrimeric G-protein complex;MFBOPA	O.I.	C.G.	H.G.
17.5	99.5	26.2	At2g29890	817539	VLN1 (VILLIN-LIKE 1)	Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization.	O.I.	C.G.	H.G.
17.3	99.5	6.7	At1g05370	837038	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPMO	O.I.	C.G.	H.G.
17.2	99.5	54.8	At2g27230	817265	LHW (LONESOME HIGHWAY)	Encodes a nuclear-localized transcriptional activator with weak sequence similarity to basic helix-loop-helix(bHLH)-domain proteins. It promotes the production of stele cells in root meristems and is required to establish and maintain the normal vascular cell number and pattern in primary and lateral roots.	O.I.	C.G.	H.G.
17.1	99.5	125.2	At5g67260	836861	CYCD3	Encode CYCD3;2, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development.	O.I.	C.G.	H.G.
17.1	99.5	16.3	At1g72670	843599	iqd8 (IQ-domain 8)	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
17.0	99.5	229.8	At5g48480	834903	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
17.0	99.5	77.4	At4g37750	829931	ANT (AINTEGUMENTA)	ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia.	O.I.	C.G.	H.G.
17.0	99.5	19.2	At1g10980	837641	-	F:unknown;P:biological_process unknown;C:vacuole;MFPO	O.I.	C.G.	H.G.
16.9	99.5	38.0	At4g18975	827633	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
16.8	99.5	126.7	At3g53190	824485	pectate lyase family protein	F:lyase activity, pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFO	O.I.	C.G.	H.G.
16.7	99.5	297.3	At4g29030	829024	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA	O.I.	C.G.	H.G.
16.7	99.5	17.1	At1g68640	843194	PAN (PERIANTHIA)	Encodes bZIP-transcription factor. Mutant plants have extra floral organs.	O.I.	C.G.	H.G.
16.6	99.5	33.6	At3g51280	824291	male sterility MS5, putative	F:binding;P:unknown;C:cellular_component unknown;OBPAF	O.I.	C.G.	H.G.
16.6	99.5	22.4	At3g57830	824952	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
16.5	99.5	94.3	At1g67750	843100	pectate lyase family protein	F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO	O.I.	C.G.	H.G.
16.5	99.5	42.6	At3g19590	821496	WD-40 repeat family protein / mitotic checkpoint protein, putative	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPA	O.I.	C.G.	H.G.
16.5	99.5	36.0	At5g46570	834700	BSK2 (BR-SIGNALING KINASE 2)	Encodes BR-signaling kinase 2 (BSK2), one of the three homologous BR-signaling kinases (BSK1, AT4G35230; BSK2, AT5G46570; BSK3, AT4G00710). Mediates signal transduction from receptor kinase BRI1 by functioning as the substrate of BRI1. Plasma membrane localized.	O.I.	C.G.	H.G.
16.4	99.5	48.0	At1g24070	839019	ATCSLA10	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
16.4	99.5	6.3	At1g30950	839982	UFO (UNUSUAL FLORAL ORGANS)	Required for the proper identity of the floral meristem. Involved in establishing the whorled pattern of floral organs, in the control of specification of the floral meristem, and in the activation of APETALA3 and PISTILLATA. UFO is found at the AP3 promoter in a LFY-dependent manner, suggesting that it works with LFY to regulate AP3 expression. UFO may also promote the ubiquitylation of LFY.	O.I.	C.G.	H.G.
16.2	99.5	58.8	At5g51560	835230	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	-
Assay name	E-MEXP-682-raw-cel-922397611
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-682-raw-cel-922397611 GSE experiment -

GSM ID -

Assay name E-MEXP-682-raw-cel-922397611

GSE experiment -