CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-557-raw-cel-879731502

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
72.5 99.9 92.1 At1g78510 844187 SPS1 (solanesyl diphosphate synthase 1) Encodes a protein with solanesyl diphosphate synthase activity. O.I. C.G. H.G.
67.2 99.8 32.6 At4g15480 827220 UGT84A1 Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity. O.I. C.G. H.G.
66.3 99.8 78.7 At1g76570 843990 chlorophyll A-B binding family protein F:chlorophyll binding;P:response to blue light, response to far red light, photosynthesis;C:light-harvesting complex, chloroplast, membrane;POM O.I. C.G. H.G.
60.5 99.8 149.6 At5g24120 832477 SIGE (SIGMA FACTOR E) Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes. O.I. C.G. H.G.
49.1 99.8 158.1 At5g17050 831568 UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2) The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flavonols such as kaempferol and quercetin are accepted substrates. O.I. C.G. H.G.
47.6 99.8 188.5 At3g21560 821710 UGT84A2 Encodes a protein with sinapic acid:UDP-glucose glucosyltransferase activity. Mutants defective in this gene are hyper-fluorescent (which accumulate in their trichomes a compound that is likely to be 3',5'-dimethoxynaringenin chalcone or sinapoyltriacetic acid lactone, potential products of the concerted action of 4-coumarate CoA ligase and chalcone synthase on sinapic acid). O.I. C.G. H.G.
47.5 99.8 83.9 At5g23730 832438 nucleotide binding F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPA O.I. C.G. H.G.
43.1 99.8 269.0 At3g56290 824796 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
42.0 99.8 67.9 At5g42760 834285 - F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMF O.I. C.G. H.G.
41.4 99.8 387.8 At3g17800 821048 - mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem O.I. C.G. H.G.
39.6 99.8 57.6 At3g21890 821744 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:response to UV-B, regulation of transcription;C:intracellular;PO O.I. C.G. H.G.
37.2 99.7 77.1 At4g31870 829316 ATGPX7 (glutathione peroxidase 7) Encodes glutathione peroxidase. O.I. C.G. H.G.
36.3 99.7 383.5 At4g14690 827119 ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2) Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis. O.I. C.G. H.G.
33.9 99.7 25.2 At5g58760 835990 DDB2 (damaged DNA-binding 2) F:nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPA O.I. C.G. H.G.
32.6 99.7 269.5 At5g35970 833589 DNA-binding protein, putative F:DNA binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BMOFPA O.I. C.G. H.G.
32.4 99.7 58.6 At4g27820 828895 BGLU9 (BETA GLUCOSIDASE 9) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:peroxisome;BOPMFA O.I. C.G. H.G.
30.1 99.7 99.4 At1g79270 844267 ECT8 (evolutionarily conserved C-terminal region 8) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
29.5 99.7 67.1 At4g27030 828811 small conjugating protein ligase F:small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:chloroplast;MOPBV O.I. C.G. H.G.
29.4 99.7 45.9 At2g38780 818460 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBM O.I. C.G. H.G.
26.2 99.7 341.3 At3g22840 821855 ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN) Encodes an early light-inducible protein. O.I. C.G. H.G.
25.8 99.7 62.7 At1g60590 842353 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVA O.I. C.G. H.G.
23.9 99.6 154.7 At4g25700 828675 BETA-OHASE 1 (BETA-HYDROXYLASE 1) Converts beta-carotene to zeaxanthin via cryptoxanthin. O.I. C.G. H.G.
22.8 99.6 13.5 At2g36750 818247 UGT73C1 (UDP-GLUCOSYL TRANSFERASE 73C1) F:cis-zeatin O-beta-D-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups, trans-zeatin O-beta-D-glucosyltransferase activity;P:response to UV-B;C:unknown;PMVBOF O.I. C.G. H.G.
22.3 99.6 48.5 At2g41040 818703 methyltransferase-related F:methyltransferase activity;P:metabolic process;C:chloroplast, plastoglobule;BOAPFM O.I. C.G. H.G.
22.0 99.6 41.9 At5g52250 835301 transducin family protein / WD-40 repeat family protein Encodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response. O.I. C.G. H.G.
21.8 99.6 63.4 At3g27110 822330 peptidase M48 family protein F:metalloendopeptidase activity;P:proteolysis;C:chloroplast, membrane;BOAPF O.I. C.G. H.G.
20.3 99.6 59.5 At1g18660 838447 zinc finger (C3HC4-type RING finger) family protein F:protein binding, ATP-dependent peptidase activity, binding, zinc ion binding;P:ATP-dependent proteolysis;C:unknown;MOPFBVA O.I. C.G. H.G.
20.2 99.6 16.8 At2g29160 3768464 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
19.7 99.6 65.3 At1g73990 843737 SPPA Encodes a putative protease SppA (SppA). O.I. C.G. H.G.
19.6 99.6 36.0 At3g09650 820122 HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152) RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit. O.I. C.G. H.G.
19.2 99.6 27.8 At5g55570 835651 unknown protein F:unknown;P:unknown;C:chloroplast;PM O.I. C.G. H.G.
18.3 99.5 197.5 At5g51720 835246 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPO O.I. C.G. H.G.
18.2 99.5 167.9 At1g22690 838875 gibberellin-responsive protein, putative F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P O.I. C.G. H.G.
18.2 99.5 34.3 At5g24850 832554 CRY3 (cryptochrome 3) Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome. O.I. C.G. H.G.
18.0 99.5 39.4 At3g17609 821027 HYH (HY5-HOMOLOG) F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO O.I. C.G. H.G.
17.5 99.5 255.8 At1g53670 841804 MSRB1 (methionine sulfoxide reductase B 1) F:peptide-methionine-(S)-S-oxide reductase activity;P:response to oxidative stress, N-terminal protein myristoylation;C:chloroplast stroma, chloroplast;OBMPFAV O.I. C.G. H.G.
17.3 99.5 221.6 At2g38210 818400 PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4) F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPM O.I. C.G. H.G.
16.7 99.5 124.9 At3g61220 825294 short-chain dehydrogenase/reductase (SDR) family protein F:(-)-menthol dehydrogenase activity, oxidoreductase activity, (+)-neomenthol dehydrogenase activity;P:defense response;C:plasma membrane;BOMFPA O.I. C.G. H.G.
16.7 99.5 51.6 At4g37150 829869 MES9 (METHYL ESTERASE 9) Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES9 appears to be involved in MeSA hydrolysis in planta. Expression of MES9 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
16.6 99.5 95.1 At5g60540 836175 PDX2 (PYRIDOXINE BIOSYNTHESIS 2) Encodes a protein predicted to function in tandem with PDX1 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis. PDX2 is predicted to function as glutaminase within the complex. O.I. C.G. H.G.
16.4 99.5 112.8 At3g24190 822005 ABC1 family protein F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAV O.I. C.G. H.G.
16.3 99.5 59.4 At5g52570 835334 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) Converts β-carotene to zeaxanthin via cryptoxanthin. O.I. C.G. H.G.
16.0 99.5 135.7 At4g37760 829932 SQE3 (squalene epoxidase 3) F:squalene monooxygenase activity;P:response to jasmonic acid stimulus, sterol biosynthetic process, response to wounding;C:endomembrane system, integral to membrane;BOFMPA O.I. C.G. H.G.
15.9 99.5 112.2 At1g06430 837154 FTSH8 encodes a FtsH protease that is localized to the chloroplast O.I. C.G. H.G.
15.5 99.5 30.4 At3g52740 824440 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.7 99.4 159.7 At5g02270 831709 ATNAP9 member of NAP subfamily O.I. C.G. H.G.
14.5 99.4 54.7 At1g78170 844153 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.9 99.4 221.2 At1g50250 841447 FTSH1 (FtsH protease 1) encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes. O.I. C.G. H.G.
13.9 99.4 58.4 At1g79510 844289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO O.I. C.G. H.G.
13.7 99.4 153.3 At1g10370 837576 ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9) F:glutathione transferase activity;P:response to water deprivation, toxin catabolic process;C:chloroplast, cytoplasm;BPOMF O.I. C.G. H.G.
13.6 99.4 59.1 At5g03555 831791 permease, cytosine/purines, uracil, thiamine, allantoin family protein F:nucleobase transmembrane transporter activity;P:nucleobase, nucleoside, nucleotide and nucleic acid transport;C:membrane;BOFAPM O.I. C.G. H.G.
13.0 99.4 172.5 At3g57020 824869 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum, vacuole;PMBOFA O.I. C.G. H.G.
13.0 99.4 52.4 At1g06690 837179 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity, ATPase activity, ATP binding;P:oxidation reduction;C:chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;BOMFPA O.I. C.G. H.G.
12.9 99.3 35.0 At5g19850 832105 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOMPFA O.I. C.G. H.G.
12.9 99.3 31.1 At4g34610 829613 BLH6 (BELL1-LIKE HOMEODOMAIN 6) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMFOB O.I. C.G. H.G.
12.8 99.3 34.0 At5g59350 836054 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
12.8 99.3 25.1 At1g06180 837127 ATMYB13 (MYB DOMAIN PROTEIN 13) member of MYB3R- and R2R3- type MYB- encoding genes O.I. C.G. H.G.
12.7 99.3 260.2 At4g26850 828792 VTC2 (vitamin c defective 2) Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light. O.I. C.G. H.G.
12.7 99.3 108.1 At3g14690 820697 CYP72A15 putative cytochrome P450 O.I. C.G. H.G.
12.6 99.3 17.9 At5g28030 832873 cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative F:pyridoxal phosphate binding, cysteine synthase activity, catalytic activity;P:cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process;C:unknown;BOFPMA O.I. C.G. H.G.
12.6 99.3 13.9 At5g41900 834195 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
12.5 99.3 54.0 At4g00050 828175 UNE10 (unfertilized embryo sac 10) F:transcription factor activity, DNA binding;P:double fertilization forming a zygote and endosperm, regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
12.5 99.3 14.7 At2g29090 817457 CYP707A2 Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition. O.I. C.G. H.G.
12.3 99.3 188.5 At5g44110 834434 POP1 Encodes a member of the NAP subfamily of ABC transporters. O.I. C.G. H.G.
12.2 99.3 49.5 At3g25410 822125 bile acid:sodium symporter family protein F:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport;C:chloroplast, membrane;OBMPA O.I. C.G. H.G.
12.2 99.3 21.0 At1g28610 839761 GDSL-motif lipase, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBM O.I. C.G. H.G.
12.1 99.3 91.8 At1g66330 842950 senescence-associated family protein F:unknown;P:senescence;C:unknown;PB O.I. C.G. H.G.
12.1 99.3 56.6 At5g64850 836608 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
12.0 99.3 44.3 At2g21320 816671 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM O.I. C.G. H.G.
12.0 99.3 34.1 At1g05070 839330 unknown protein F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;PBO O.I. C.G. H.G.
11.8 99.3 125.6 At5g55620 835656 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.4 99.3 37.5 At1g27480 839639 lecithin:cholesterol acyltransferase family protein / LACT family protein F:phosphatidylcholine-sterol O-acyltransferase activity;P:lipid metabolic process;C:plasma membrane, vacuole;MPOB O.I. C.G. H.G.
11.3 99.3 55.8 At5g10470 830911 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane, membrane, chloroplast envelope;MOFPBAV O.I. C.G. H.G.
11.2 99.2 72.1 At1g78600 844196 LZF1 (LIGHT-REGULATED ZINC FINGER PROTEIN 1) F:transcription factor activity, zinc ion binding;P:chlorophyll biosynthetic process, chloroplast organization, anthocyanin biosynthetic process, regulation of photomorphogenesis, regulation of transcription;C:nuclear speck;POM O.I. C.G. H.G.
11.2 99.2 59.5 At3g47430 823897 PEX11B member of the peroxin11 (PEX11) gene family, located on the peroxisome membrane, controls peroxisome proliferation. O.I. C.G. H.G.
11.2 99.2 46.5 At4g18390 827568 TCP family transcription factor, putative F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMFB O.I. C.G. H.G.
10.9 99.2 23.5 At5g11260 830996 HY5 (ELONGATED HYPOCOTYL 5) Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. O.I. C.G. H.G.
10.8 99.2 79.1 At1g22770 838883 GI (GIGANTEA) Together with CONSTANTS (CO) and FLOWERING LOCUS T (FT), GIGANTEA promotes flowering under long days in a circadian clock-controlled flowering pathway. GI acts earlier than CO and FT in the pathway by increasing CO and FT mRNA abundance. Located in the nucleus. Regulates several developmental processes, including photoperiod-mediated flowering, phytochrome B signaling, circadian clock, carbohydrate metabolism, and cold stress response. The gene's transcription is controlled by the circadian clock and it is post-transcriptionally regulated by light and dark. Forms a complex with FKF1 on the CO promoter to regulate CO expression. O.I. C.G. H.G.
10.7 99.2 19.4 At3g54990 824664 SMZ (SCHLAFMUTZE) Encodes a AP2 domain transcription factor that can repress flowering. SMZ and its paralogous gene, SNARCHZAPFEN (SNZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering. O.I. C.G. H.G.
10.6 99.2 81.9 At3g55120 824678 TT5 (TRANSPARENT TESTA 5) Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems. O.I. C.G. H.G.
10.6 99.2 14.6 At3g56260 824792 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
10.5 99.2 197.5 At3g51240 824287 F3H (FLAVANONE 3-HYDROXYLASE) Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis. O.I. C.G. H.G.
10.5 99.2 86.0 At4g33660 829507 unknown protein F:unknown;P:unknown;C:unknown;MPOFBVA O.I. C.G. H.G.
10.5 99.2 41.3 At3g21390 821693 mitochondrial substrate carrier family protein F:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO O.I. C.G. H.G.
10.5 99.2 9.2 At1g01520 839337 myb family transcription factor F:transcription factor activity, DNA binding;P:response to salt stress, regulation of transcription, DNA-dependent;C:unknown;POM O.I. C.G. H.G.
10.3 99.2 13.2 At5g17780 831646 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
10.2 99.2 105.8 At1g64680 842776 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO O.I. C.G. H.G.
10.2 99.2 59.9 At5g26820 832740 ATIREG3 (IRON-REGULATED PROTEIN 3) F:unknown;P:unknown;C:membrane;MPFOB O.I. C.G. H.G.
10.1 99.2 19.5 At2g32640 817824 unknown protein F:unknown;P:unknown;C:chloroplast;BPO O.I. C.G. H.G.
10.0 99.2 44.0 At5g24160 832482 SQE6 (SQUALENE MONOXYGENASE 6) F:squalene monooxygenase activity, oxidoreductase activity, FAD binding;P:sterol biosynthetic process;C:endomembrane system, integral to membrane;OBFMPA O.I. C.G. H.G.
9.9 99.1 8.9 At3g16175 820863 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;PMBFO O.I. C.G. H.G.
9.8 99.1 16.1 At5g55580 835652 mitochondrial transcription termination factor family protein / mTERF family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOFVB O.I. C.G. H.G.
9.7 99.1 41.3 At2g36630 818235 unknown protein F:unknown;P:N-terminal protein myristoylation;C:endomembrane system, integral to membrane;BOPA O.I. C.G. H.G.
9.7 99.1 38.0 At2g46340 819242 SPA1 (SUPPRESSOR OF PHYA-105 1) Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA1 is a PHYA signaling intermediate, putative regulator of PHYA signaling pathway. Light responsive repressor of photomorphogenesis. Involved in regulating circadian rhythms and flowering time in plants. Under constant light, the abundance of SPA1 protein exhibited circadian regulation, whereas under constant darkness, SPA1 protein levels remained unchanged. In addition, the spa1-3 mutation slightly shortened circadian period of CCA1, TOC1/PRR1 and SPA1 transcript accumulation under constant light. O.I. C.G. H.G.
9.7 99.1 19.3 At5g20220 832144 zinc knuckle (CCHC-type) family protein F:unfolded protein binding, heat shock protein binding, zinc ion binding, nucleic acid binding;P:protein folding;C:unknown;VMFOPB O.I. C.G. H.G.
9.3 99.1 32.3 At3g43600 823457 AAO2 (ALDEHYDE OXIDASE 2) Encodes aldehyde oxidase AAO2. O.I. C.G. H.G.
9.2 99.1 137.7 At2g37970 818374 SOUL-1 F:binding;P:red or far red light signaling pathway, N-terminal protein myristoylation;C:plasma membrane, vacuole;OBPMA O.I. C.G. H.G.
9.0 99.1 35.4 At5g57180 835824 CIA2 (CHLOROPLAST IMPORT APPARATUS 2) Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast. O.I. C.G. H.G.
9.0 99.1 25.7 At1g53090 841743 SPA4 (SPA1-RELATED 4) Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. O.I. C.G. H.G.
8.9 99.0 52.1 At3g48610 824021 phosphoesterase family protein F:hydrolase activity, acting on ester bonds;P:unknown;C:endomembrane system;BFPOA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
72.5	99.9	92.1	At1g78510	844187	SPS1 (solanesyl diphosphate synthase 1)	Encodes a protein with solanesyl diphosphate synthase activity.	O.I.	C.G.	H.G.
67.2	99.8	32.6	At4g15480	827220	UGT84A1	Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.	O.I.	C.G.	H.G.
66.3	99.8	78.7	At1g76570	843990	chlorophyll A-B binding family protein	F:chlorophyll binding;P:response to blue light, response to far red light, photosynthesis;C:light-harvesting complex, chloroplast, membrane;POM	O.I.	C.G.	H.G.
60.5	99.8	149.6	At5g24120	832477	SIGE (SIGMA FACTOR E)	Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.	O.I.	C.G.	H.G.
49.1	99.8	158.1	At5g17050	831568	UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)	The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flavonols such as kaempferol and quercetin are accepted substrates.	O.I.	C.G.	H.G.
47.6	99.8	188.5	At3g21560	821710	UGT84A2	Encodes a protein with sinapic acid:UDP-glucose glucosyltransferase activity. Mutants defective in this gene are hyper-fluorescent (which accumulate in their trichomes a compound that is likely to be 3',5'-dimethoxynaringenin chalcone or sinapoyltriacetic acid lactone, potential products of the concerted action of 4-coumarate CoA ligase and chalcone synthase on sinapic acid).	O.I.	C.G.	H.G.
47.5	99.8	83.9	At5g23730	832438	nucleotide binding	F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPA	O.I.	C.G.	H.G.
43.1	99.8	269.0	At3g56290	824796	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
42.0	99.8	67.9	At5g42760	834285	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMF	O.I.	C.G.	H.G.
41.4	99.8	387.8	At3g17800	821048	-	mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem	O.I.	C.G.	H.G.
39.6	99.8	57.6	At3g21890	821744	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:response to UV-B, regulation of transcription;C:intracellular;PO	O.I.	C.G.	H.G.
37.2	99.7	77.1	At4g31870	829316	ATGPX7 (glutathione peroxidase 7)	Encodes glutathione peroxidase.	O.I.	C.G.	H.G.
36.3	99.7	383.5	At4g14690	827119	ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)	Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis.	O.I.	C.G.	H.G.
33.9	99.7	25.2	At5g58760	835990	DDB2 (damaged DNA-binding 2)	F:nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPA	O.I.	C.G.	H.G.
32.6	99.7	269.5	At5g35970	833589	DNA-binding protein, putative	F:DNA binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BMOFPA	O.I.	C.G.	H.G.
32.4	99.7	58.6	At4g27820	828895	BGLU9 (BETA GLUCOSIDASE 9)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:peroxisome;BOPMFA	O.I.	C.G.	H.G.
30.1	99.7	99.4	At1g79270	844267	ECT8 (evolutionarily conserved C-terminal region 8)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
29.5	99.7	67.1	At4g27030	828811	small conjugating protein ligase	F:small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:chloroplast;MOPBV	O.I.	C.G.	H.G.
29.4	99.7	45.9	At2g38780	818460	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBM	O.I.	C.G.	H.G.
26.2	99.7	341.3	At3g22840	821855	ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN)	Encodes an early light-inducible protein.	O.I.	C.G.	H.G.
25.8	99.7	62.7	At1g60590	842353	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVA	O.I.	C.G.	H.G.
23.9	99.6	154.7	At4g25700	828675	BETA-OHASE 1 (BETA-HYDROXYLASE 1)	Converts beta-carotene to zeaxanthin via cryptoxanthin.	O.I.	C.G.	H.G.
22.8	99.6	13.5	At2g36750	818247	UGT73C1 (UDP-GLUCOSYL TRANSFERASE 73C1)	F:cis-zeatin O-beta-D-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups, trans-zeatin O-beta-D-glucosyltransferase activity;P:response to UV-B;C:unknown;PMVBOF	O.I.	C.G.	H.G.
22.3	99.6	48.5	At2g41040	818703	methyltransferase-related	F:methyltransferase activity;P:metabolic process;C:chloroplast, plastoglobule;BOAPFM	O.I.	C.G.	H.G.
22.0	99.6	41.9	At5g52250	835301	transducin family protein / WD-40 repeat family protein	Encodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response.	O.I.	C.G.	H.G.
21.8	99.6	63.4	At3g27110	822330	peptidase M48 family protein	F:metalloendopeptidase activity;P:proteolysis;C:chloroplast, membrane;BOAPF	O.I.	C.G.	H.G.
20.3	99.6	59.5	At1g18660	838447	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, ATP-dependent peptidase activity, binding, zinc ion binding;P:ATP-dependent proteolysis;C:unknown;MOPFBVA	O.I.	C.G.	H.G.
20.2	99.6	16.8	At2g29160	3768464	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
19.7	99.6	65.3	At1g73990	843737	SPPA	Encodes a putative protease SppA (SppA).	O.I.	C.G.	H.G.
19.6	99.6	36.0	At3g09650	820122	HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152)	RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit.	O.I.	C.G.	H.G.
19.2	99.6	27.8	At5g55570	835651	unknown protein	F:unknown;P:unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
18.3	99.5	197.5	At5g51720	835246	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPO	O.I.	C.G.	H.G.
18.2	99.5	167.9	At1g22690	838875	gibberellin-responsive protein, putative	F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
18.2	99.5	34.3	At5g24850	832554	CRY3 (cryptochrome 3)	Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome.	O.I.	C.G.	H.G.
18.0	99.5	39.4	At3g17609	821027	HYH (HY5-HOMOLOG)	F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO	O.I.	C.G.	H.G.
17.5	99.5	255.8	At1g53670	841804	MSRB1 (methionine sulfoxide reductase B 1)	F:peptide-methionine-(S)-S-oxide reductase activity;P:response to oxidative stress, N-terminal protein myristoylation;C:chloroplast stroma, chloroplast;OBMPFAV	O.I.	C.G.	H.G.
17.3	99.5	221.6	At2g38210	818400	PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4)	F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPM	O.I.	C.G.	H.G.
16.7	99.5	124.9	At3g61220	825294	short-chain dehydrogenase/reductase (SDR) family protein	F:(-)-menthol dehydrogenase activity, oxidoreductase activity, (+)-neomenthol dehydrogenase activity;P:defense response;C:plasma membrane;BOMFPA	O.I.	C.G.	H.G.
16.7	99.5	51.6	At4g37150	829869	MES9 (METHYL ESTERASE 9)	Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES9 appears to be involved in MeSA hydrolysis in planta. Expression of MES9 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
16.6	99.5	95.1	At5g60540	836175	PDX2 (PYRIDOXINE BIOSYNTHESIS 2)	Encodes a protein predicted to function in tandem with PDX1 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis. PDX2 is predicted to function as glutaminase within the complex.	O.I.	C.G.	H.G.
16.4	99.5	112.8	At3g24190	822005	ABC1 family protein	F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAV	O.I.	C.G.	H.G.
16.3	99.5	59.4	At5g52570	835334	BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)	Converts β-carotene to zeaxanthin via cryptoxanthin.	O.I.	C.G.	H.G.
16.0	99.5	135.7	At4g37760	829932	SQE3 (squalene epoxidase 3)	F:squalene monooxygenase activity;P:response to jasmonic acid stimulus, sterol biosynthetic process, response to wounding;C:endomembrane system, integral to membrane;BOFMPA	O.I.	C.G.	H.G.
15.9	99.5	112.2	At1g06430	837154	FTSH8	encodes a FtsH protease that is localized to the chloroplast	O.I.	C.G.	H.G.
15.5	99.5	30.4	At3g52740	824440	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.7	99.4	159.7	At5g02270	831709	ATNAP9	member of NAP subfamily	O.I.	C.G.	H.G.
14.5	99.4	54.7	At1g78170	844153	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.9	99.4	221.2	At1g50250	841447	FTSH1 (FtsH protease 1)	encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes.	O.I.	C.G.	H.G.
13.9	99.4	58.4	At1g79510	844289	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO	O.I.	C.G.	H.G.
13.7	99.4	153.3	At1g10370	837576	ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)	F:glutathione transferase activity;P:response to water deprivation, toxin catabolic process;C:chloroplast, cytoplasm;BPOMF	O.I.	C.G.	H.G.
13.6	99.4	59.1	At5g03555	831791	permease, cytosine/purines, uracil, thiamine, allantoin family protein	F:nucleobase transmembrane transporter activity;P:nucleobase, nucleoside, nucleotide and nucleic acid transport;C:membrane;BOFAPM	O.I.	C.G.	H.G.
13.0	99.4	172.5	At3g57020	824869	strictosidine synthase family protein	F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum, vacuole;PMBOFA	O.I.	C.G.	H.G.
13.0	99.4	52.4	At1g06690	837179	aldo/keto reductase family protein	F:oxidoreductase activity, aldo-keto reductase activity, ATPase activity, ATP binding;P:oxidation reduction;C:chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;BOMFPA	O.I.	C.G.	H.G.
12.9	99.3	35.0	At5g19850	832105	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOMPFA	O.I.	C.G.	H.G.
12.9	99.3	31.1	At4g34610	829613	BLH6 (BELL1-LIKE HOMEODOMAIN 6)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMFOB	O.I.	C.G.	H.G.
12.8	99.3	34.0	At5g59350	836054	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
12.8	99.3	25.1	At1g06180	837127	ATMYB13 (MYB DOMAIN PROTEIN 13)	member of MYB3R- and R2R3- type MYB- encoding genes	O.I.	C.G.	H.G.
12.7	99.3	260.2	At4g26850	828792	VTC2 (vitamin c defective 2)	Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light.	O.I.	C.G.	H.G.
12.7	99.3	108.1	At3g14690	820697	CYP72A15	putative cytochrome P450	O.I.	C.G.	H.G.
12.6	99.3	17.9	At5g28030	832873	cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative	F:pyridoxal phosphate binding, cysteine synthase activity, catalytic activity;P:cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process;C:unknown;BOFPMA	O.I.	C.G.	H.G.
12.6	99.3	13.9	At5g41900	834195	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
12.5	99.3	54.0	At4g00050	828175	UNE10 (unfertilized embryo sac 10)	F:transcription factor activity, DNA binding;P:double fertilization forming a zygote and endosperm, regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
12.5	99.3	14.7	At2g29090	817457	CYP707A2	Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition.	O.I.	C.G.	H.G.
12.3	99.3	188.5	At5g44110	834434	POP1	Encodes a member of the NAP subfamily of ABC transporters.	O.I.	C.G.	H.G.
12.2	99.3	49.5	At3g25410	822125	bile acid:sodium symporter family protein	F:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport;C:chloroplast, membrane;OBMPA	O.I.	C.G.	H.G.
12.2	99.3	21.0	At1g28610	839761	GDSL-motif lipase, putative	F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBM	O.I.	C.G.	H.G.
12.1	99.3	91.8	At1g66330	842950	senescence-associated family protein	F:unknown;P:senescence;C:unknown;PB	O.I.	C.G.	H.G.
12.1	99.3	56.6	At5g64850	836608	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
12.0	99.3	44.3	At2g21320	816671	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM	O.I.	C.G.	H.G.
12.0	99.3	34.1	At1g05070	839330	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;PBO	O.I.	C.G.	H.G.
11.8	99.3	125.6	At5g55620	835656	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.4	99.3	37.5	At1g27480	839639	lecithin:cholesterol acyltransferase family protein / LACT family protein	F:phosphatidylcholine-sterol O-acyltransferase activity;P:lipid metabolic process;C:plasma membrane, vacuole;MPOB	O.I.	C.G.	H.G.
11.3	99.3	55.8	At5g10470	830911	kinesin motor protein-related	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane, membrane, chloroplast envelope;MOFPBAV	O.I.	C.G.	H.G.
11.2	99.2	72.1	At1g78600	844196	LZF1 (LIGHT-REGULATED ZINC FINGER PROTEIN 1)	F:transcription factor activity, zinc ion binding;P:chlorophyll biosynthetic process, chloroplast organization, anthocyanin biosynthetic process, regulation of photomorphogenesis, regulation of transcription;C:nuclear speck;POM	O.I.	C.G.	H.G.
11.2	99.2	59.5	At3g47430	823897	PEX11B	member of the peroxin11 (PEX11) gene family, located on the peroxisome membrane, controls peroxisome proliferation.	O.I.	C.G.	H.G.
11.2	99.2	46.5	At4g18390	827568	TCP family transcription factor, putative	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
10.9	99.2	23.5	At5g11260	830996	HY5 (ELONGATED HYPOCOTYL 5)	Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression.	O.I.	C.G.	H.G.
10.8	99.2	79.1	At1g22770	838883	GI (GIGANTEA)	Together with CONSTANTS (CO) and FLOWERING LOCUS T (FT), GIGANTEA promotes flowering under long days in a circadian clock-controlled flowering pathway. GI acts earlier than CO and FT in the pathway by increasing CO and FT mRNA abundance. Located in the nucleus. Regulates several developmental processes, including photoperiod-mediated flowering, phytochrome B signaling, circadian clock, carbohydrate metabolism, and cold stress response. The gene's transcription is controlled by the circadian clock and it is post-transcriptionally regulated by light and dark. Forms a complex with FKF1 on the CO promoter to regulate CO expression.	O.I.	C.G.	H.G.
10.7	99.2	19.4	At3g54990	824664	SMZ (SCHLAFMUTZE)	Encodes a AP2 domain transcription factor that can repress flowering. SMZ and its paralogous gene, SNARCHZAPFEN (SNZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.	O.I.	C.G.	H.G.
10.6	99.2	81.9	At3g55120	824678	TT5 (TRANSPARENT TESTA 5)	Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems.	O.I.	C.G.	H.G.
10.6	99.2	14.6	At3g56260	824792	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
10.5	99.2	197.5	At3g51240	824287	F3H (FLAVANONE 3-HYDROXYLASE)	Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis.	O.I.	C.G.	H.G.
10.5	99.2	86.0	At4g33660	829507	unknown protein	F:unknown;P:unknown;C:unknown;MPOFBVA	O.I.	C.G.	H.G.
10.5	99.2	41.3	At3g21390	821693	mitochondrial substrate carrier family protein	F:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	O.I.	C.G.	H.G.
10.5	99.2	9.2	At1g01520	839337	myb family transcription factor	F:transcription factor activity, DNA binding;P:response to salt stress, regulation of transcription, DNA-dependent;C:unknown;POM	O.I.	C.G.	H.G.
10.3	99.2	13.2	At5g17780	831646	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
10.2	99.2	105.8	At1g64680	842776	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO	O.I.	C.G.	H.G.
10.2	99.2	59.9	At5g26820	832740	ATIREG3 (IRON-REGULATED PROTEIN 3)	F:unknown;P:unknown;C:membrane;MPFOB	O.I.	C.G.	H.G.
10.1	99.2	19.5	At2g32640	817824	unknown protein	F:unknown;P:unknown;C:chloroplast;BPO	O.I.	C.G.	H.G.
10.0	99.2	44.0	At5g24160	832482	SQE6 (SQUALENE MONOXYGENASE 6)	F:squalene monooxygenase activity, oxidoreductase activity, FAD binding;P:sterol biosynthetic process;C:endomembrane system, integral to membrane;OBFMPA	O.I.	C.G.	H.G.
9.9	99.1	8.9	At3g16175	820863	thioesterase family protein	F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;PMBFO	O.I.	C.G.	H.G.
9.8	99.1	16.1	At5g55580	835652	mitochondrial transcription termination factor family protein / mTERF family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
9.7	99.1	41.3	At2g36630	818235	unknown protein	F:unknown;P:N-terminal protein myristoylation;C:endomembrane system, integral to membrane;BOPA	O.I.	C.G.	H.G.
9.7	99.1	38.0	At2g46340	819242	SPA1 (SUPPRESSOR OF PHYA-105 1)	Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA1 is a PHYA signaling intermediate, putative regulator of PHYA signaling pathway. Light responsive repressor of photomorphogenesis. Involved in regulating circadian rhythms and flowering time in plants. Under constant light, the abundance of SPA1 protein exhibited circadian regulation, whereas under constant darkness, SPA1 protein levels remained unchanged. In addition, the spa1-3 mutation slightly shortened circadian period of CCA1, TOC1/PRR1 and SPA1 transcript accumulation under constant light.	O.I.	C.G.	H.G.
9.7	99.1	19.3	At5g20220	832144	zinc knuckle (CCHC-type) family protein	F:unfolded protein binding, heat shock protein binding, zinc ion binding, nucleic acid binding;P:protein folding;C:unknown;VMFOPB	O.I.	C.G.	H.G.
9.3	99.1	32.3	At3g43600	823457	AAO2 (ALDEHYDE OXIDASE 2)	Encodes aldehyde oxidase AAO2.	O.I.	C.G.	H.G.
9.2	99.1	137.7	At2g37970	818374	SOUL-1	F:binding;P:red or far red light signaling pathway, N-terminal protein myristoylation;C:plasma membrane, vacuole;OBPMA	O.I.	C.G.	H.G.
9.0	99.1	35.4	At5g57180	835824	CIA2 (CHLOROPLAST IMPORT APPARATUS 2)	Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.	O.I.	C.G.	H.G.
9.0	99.1	25.7	At1g53090	841743	SPA4 (SPA1-RELATED 4)	Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants.	O.I.	C.G.	H.G.
8.9	99.0	52.1	At3g48610	824021	phosphoesterase family protein	F:hydrolase activity, acting on ester bonds;P:unknown;C:endomembrane system;BFPOA	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-MEXP-557-raw-cel-879731502
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-557-raw-cel-879731502 GSE experiment -

GSM ID -

Assay name E-MEXP-557-raw-cel-879731502

GSE experiment -