CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-475-raw-cel-680982332

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
36.7 99.7 68.0 At2g36690 818241 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biosynthetic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
22.8 99.6 62.1 At3g21870 821742 CYCP2 F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPB O.I. C.G. H.G.
21.6 99.6 138.8 At2g19800 816499 MIOX2 (MYO-INOSITOL OXYGENASE 2) Encodes a myo-inositol oxygenase family gene. O.I. C.G. H.G.
19.9 99.6 35.4 At4g21400 827892 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
19.8 99.6 27.9 At3g15620 820804 UVR3 (UV REPAIR DEFECTIVE 3) Required for photorepair of 6-4 photoproducts in Arabidopsis thaliana. O.I. C.G. H.G.
19.5 99.6 55.1 At5g17300 831595 myb family transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;PMOFVB O.I. C.G. H.G.
19.4 99.6 86.5 At3g14770 820705 nodulin MtN3 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMO O.I. C.G. H.G.
19.3 99.6 39.3 At5g52250 835301 transducin family protein / WD-40 repeat family protein Encodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response. O.I. C.G. H.G.
19.0 99.5 22.6 At4g26150 828721 CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1) F:transcription factor activity;P:response to cytokinin stimulus;C:nucleus;FPOM O.I. C.G. H.G.
18.5 99.5 95.9 At1g15040 838069 glutamine amidotransferase-related F:hydrolase activity;P:glutamine metabolic process;C:cellular_component unknown;BOPAFM O.I. C.G. H.G.
17.1 99.5 50.1 At1g24530 839068 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:plasma membrane, heterotrimeric G-protein complex;MFOBPA O.I. C.G. H.G.
16.8 99.5 99.6 At3g46280 823773 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFBO O.I. C.G. H.G.
16.5 99.5 53.1 At5g47610 834811 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
15.7 99.5 144.0 At1g68840 843216 RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE) Rav2 is part of a complex that has been named `regulator of the (H+)-ATPase of the vacuolar and endosomal membranes' (RAVE) O.I. C.G. H.G.
14.9 99.4 63.2 At1g08630 837385 THA1 (Threonine Aldolase 1) Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings. O.I. C.G. H.G.
14.3 99.4 297.4 At3g30775 822833 ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5) Encodes a proline oxidase that is predicted to localize to the inner mitochondrial membrane, its mRNA expression induced by high levels of Al and by osmotic stress. The promoter contains an L-proline-inducible element. O.I. C.G. H.G.
14.2 99.4 50.9 At1g54740 841915 - F:molecular_function unknown;P:biological_process unknown;C:unknown;OPMBF O.I. C.G. H.G.
13.4 99.4 70.4 At1g52100 841640 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PFO O.I. C.G. H.G.
13.3 99.4 43.8 At1g22500 838856 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
13.1 99.4 67.5 At4g17245 827437 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
12.9 99.3 80.1 At5g56100 835709 glycine-rich protein / oleosin F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PB O.I. C.G. H.G.
12.8 99.3 15.1 At1g13670 837928 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
12.7 99.3 194.4 At2g39570 818542 ACT domain-containing protein F:amino acid binding;P:metabolic process;C:unknown;POB O.I. C.G. H.G.
12.0 99.3 55.6 At2g32690 3768391 GRP23 (GLYCINE-RICH PROTEIN 23) Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid. O.I. C.G. H.G.
11.8 99.3 188.2 At2g30520 817601 RPT2 (ROOT PHOTOTROPISM 2) light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis O.I. C.G. H.G.
11.8 99.3 126.2 At1g73120 843643 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:unknown;P O.I. C.G. H.G.
11.8 99.3 12.2 At2g29740 817524 UGT71C2 (UDP-GLUCOSYL TRANSFERASE 71C2) F:quercetin 3'-O-glucosyltransferase activity, quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
11.5 99.3 40.0 At1g64500 842758 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF O.I. C.G. H.G.
11.3 99.3 25.9 At5g44260 834449 zinc finger (CCCH-type) family protein F:transcription factor activity, nucleic acid binding;P:unknown;C:unknown;MOPFV O.I. C.G. H.G.
11.2 99.2 174.7 At2g20670 816595 unknown protein F:unknown;P:unknown;C:chloroplast;PO O.I. C.G. H.G.
11.2 99.2 77.2 At5g37260 833700 RVE2 (REVEILLE 2) Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis. O.I. C.G. H.G.
11.2 99.2 25.3 At2g36120 3768574 DOT1 (DEFECTIVELY ORGANIZED TRIBUTARIES 1) Encodes a glycine rich protein that is involved in leaf vascular patterning. dot1 mutants have an aberrant open-class venation pattern in leaves and cotyledons, as well as several other leaf development defects. O.I. C.G. H.G.
11.0 99.2 31.3 At5g02830 831772 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFBA O.I. C.G. H.G.
10.9 99.2 188.9 At1g62510 842548 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;OBPMVFA O.I. C.G. H.G.
10.6 99.2 123.6 At5g02840 831766 LCL1 (LHY/CCA1-like 1) CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. O.I. C.G. H.G.
10.5 99.2 100.5 At5g39580 833954 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus, N-terminal protein myristoylation;C:endomembrane system;PFO O.I. C.G. H.G.
10.2 99.2 25.3 At1g09530 837479 PIF3 (PHYTOCHROME INTERACTING FACTOR 3) Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes. O.I. C.G. H.G.
10.2 99.2 14.2 At2g43140 818916 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBF O.I. C.G. H.G.
10.1 99.2 127.8 At4g36670 829820 mannitol transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAV O.I. C.G. H.G.
10.0 99.2 30.7 At1g61380 842432 SD1-29 (S-DOMAIN-1 29) F:carbohydrate binding, protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
9.8 99.1 105.4 At5g05440 830427 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
9.8 99.1 47.8 At4g00050 828175 UNE10 (unfertilized embryo sac 10) F:transcription factor activity, DNA binding;P:double fertilization forming a zygote and endosperm, regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
9.8 99.1 21.9 At4g24240 828525 WRKY7 Encodes a Ca-dependent calmodulin binding protein. Sequence similarity to the WRKY transcription factor gene family. O.I. C.G. H.G.
9.7 99.1 50.4 At2g26980 817240 CIPK3 (CBL-INTERACTING PROTEIN KINASE 3) encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers. O.I. C.G. H.G.
9.7 99.1 24.2 At3g44970 823632 cytochrome P450 family protein F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:endomembrane system;MPBFOAV O.I. C.G. H.G.
9.5 99.1 180.8 At3g48360 823994 BT2 (BTB AND TAZ DOMAIN PROTEIN 2) encodes a protein (BT2) that is an essential component of the TAC1-mediated telomerase activation pathway. Acts redundantly with BT3 and BT1 during female gametophyte development and with BT3 during male gametophyte development. O.I. C.G. H.G.
9.5 99.1 63.1 At5g53970 835480 aminotransferase, putative encodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatment O.I. C.G. H.G.
9.4 99.1 37.9 At4g27030 828811 small conjugating protein ligase F:small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:chloroplast;MOPBV O.I. C.G. H.G.
9.3 99.1 33.1 At5g08350 830733 GRAM domain-containing protein / ABA-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.2 99.1 148.6 At5g47560 834806 TDT (TONOPLAST DICARBOXYLATE TRANSPORTER) Encodes a tonoplast malate/fumarate transporter. O.I. C.G. H.G.
9.2 99.1 28.1 At3g17609 821027 HYH (HY5-HOMOLOG) F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO O.I. C.G. H.G.
9.1 99.1 33.0 At2g13610 815846 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV O.I. C.G. H.G.
9.0 99.1 153.3 At5g65010 836625 ASN2 (ASPARAGINE SYNTHETASE 2) Encodes asparagine synthetase (ASN2). O.I. C.G. H.G.
8.9 99.0 36.6 At1g75100 843847 JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1) Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin. Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known. O.I. C.G. H.G.
8.9 99.0 25.4 At1g53090 841743 SPA4 (SPA1-RELATED 4) Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. O.I. C.G. H.G.
8.7 99.0 45.0 At5g59750 836096 riboflavin biosynthesis protein, putative F:3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity;P:riboflavin biosynthetic process;C:chloroplast;BOFAP O.I. C.G. H.G.
8.6 99.0 205.5 At5g56870 835789 BGAL4 (beta-galactosidase 4) F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PBMFOA O.I. C.G. H.G.
8.6 99.0 60.6 At3g22060 821768 receptor protein kinase-related contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069, however this protein does not have the protein kinase domain O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
36.7	99.7	68.0	At2g36690	818241	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biosynthetic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
22.8	99.6	62.1	At3g21870	821742	CYCP2	F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;FOMPB	O.I.	C.G.	H.G.
21.6	99.6	138.8	At2g19800	816499	MIOX2 (MYO-INOSITOL OXYGENASE 2)	Encodes a myo-inositol oxygenase family gene.	O.I.	C.G.	H.G.
19.9	99.6	35.4	At4g21400	827892	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
19.8	99.6	27.9	At3g15620	820804	UVR3 (UV REPAIR DEFECTIVE 3)	Required for photorepair of 6-4 photoproducts in Arabidopsis thaliana.	O.I.	C.G.	H.G.
19.5	99.6	55.1	At5g17300	831595	myb family transcription factor	F:transcription factor activity;P:regulation of transcription;C:unknown;PMOFVB	O.I.	C.G.	H.G.
19.4	99.6	86.5	At3g14770	820705	nodulin MtN3 family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMO	O.I.	C.G.	H.G.
19.3	99.6	39.3	At5g52250	835301	transducin family protein / WD-40 repeat family protein	Encodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response.	O.I.	C.G.	H.G.
19.0	99.5	22.6	At4g26150	828721	CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1)	F:transcription factor activity;P:response to cytokinin stimulus;C:nucleus;FPOM	O.I.	C.G.	H.G.
18.5	99.5	95.9	At1g15040	838069	glutamine amidotransferase-related	F:hydrolase activity;P:glutamine metabolic process;C:cellular_component unknown;BOPAFM	O.I.	C.G.	H.G.
17.1	99.5	50.1	At1g24530	839068	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:plasma membrane, heterotrimeric G-protein complex;MFOBPA	O.I.	C.G.	H.G.
16.8	99.5	99.6	At3g46280	823773	protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
16.5	99.5	53.1	At5g47610	834811	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
15.7	99.5	144.0	At1g68840	843216	RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE)	Rav2 is part of a complex that has been named `regulator of the (H+)-ATPase of the vacuolar and endosomal membranes' (RAVE)	O.I.	C.G.	H.G.
14.9	99.4	63.2	At1g08630	837385	THA1 (Threonine Aldolase 1)	Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.	O.I.	C.G.	H.G.
14.3	99.4	297.4	At3g30775	822833	ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5)	Encodes a proline oxidase that is predicted to localize to the inner mitochondrial membrane, its mRNA expression induced by high levels of Al and by osmotic stress. The promoter contains an L-proline-inducible element.	O.I.	C.G.	H.G.
14.2	99.4	50.9	At1g54740	841915	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;OPMBF	O.I.	C.G.	H.G.
13.4	99.4	70.4	At1g52100	841640	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;PFO	O.I.	C.G.	H.G.
13.3	99.4	43.8	At1g22500	838856	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
13.1	99.4	67.5	At4g17245	827437	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
12.9	99.3	80.1	At5g56100	835709	glycine-rich protein / oleosin	F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PB	O.I.	C.G.	H.G.
12.8	99.3	15.1	At1g13670	837928	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.7	99.3	194.4	At2g39570	818542	ACT domain-containing protein	F:amino acid binding;P:metabolic process;C:unknown;POB	O.I.	C.G.	H.G.
12.0	99.3	55.6	At2g32690	3768391	GRP23 (GLYCINE-RICH PROTEIN 23)	Glycine-rich protein similar in structure to GRP5. The expression of GRP23 is induced by HPA (cutin monomer, salicylic acid, and abscisic acid.	O.I.	C.G.	H.G.
11.8	99.3	188.2	At2g30520	817601	RPT2 (ROOT PHOTOTROPISM 2)	light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis	O.I.	C.G.	H.G.
11.8	99.3	126.2	At1g73120	843643	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:unknown;P	O.I.	C.G.	H.G.
11.8	99.3	12.2	At2g29740	817524	UGT71C2 (UDP-GLUCOSYL TRANSFERASE 71C2)	F:quercetin 3'-O-glucosyltransferase activity, quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
11.5	99.3	40.0	At1g64500	842758	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF	O.I.	C.G.	H.G.
11.3	99.3	25.9	At5g44260	834449	zinc finger (CCCH-type) family protein	F:transcription factor activity, nucleic acid binding;P:unknown;C:unknown;MOPFV	O.I.	C.G.	H.G.
11.2	99.2	174.7	At2g20670	816595	unknown protein	F:unknown;P:unknown;C:chloroplast;PO	O.I.	C.G.	H.G.
11.2	99.2	77.2	At5g37260	833700	RVE2 (REVEILLE 2)	Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis.	O.I.	C.G.	H.G.
11.2	99.2	25.3	At2g36120	3768574	DOT1 (DEFECTIVELY ORGANIZED TRIBUTARIES 1)	Encodes a glycine rich protein that is involved in leaf vascular patterning. dot1 mutants have an aberrant open-class venation pattern in leaves and cotyledons, as well as several other leaf development defects.	O.I.	C.G.	H.G.
11.0	99.2	31.3	At5g02830	831772	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:chloroplast;POMFBA	O.I.	C.G.	H.G.
10.9	99.2	188.9	At1g62510	842548	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;OBPMVFA	O.I.	C.G.	H.G.
10.6	99.2	123.6	At5g02840	831766	LCL1 (LHY/CCA1-like 1)	CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.	O.I.	C.G.	H.G.
10.5	99.2	100.5	At5g39580	833954	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus, N-terminal protein myristoylation;C:endomembrane system;PFO	O.I.	C.G.	H.G.
10.2	99.2	25.3	At1g09530	837479	PIF3 (PHYTOCHROME INTERACTING FACTOR 3)	Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.	O.I.	C.G.	H.G.
10.2	99.2	14.2	At2g43140	818916	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBF	O.I.	C.G.	H.G.
10.1	99.2	127.8	At4g36670	829820	mannitol transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAV	O.I.	C.G.	H.G.
10.0	99.2	30.7	At1g61380	842432	SD1-29 (S-DOMAIN-1 29)	F:carbohydrate binding, protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
9.8	99.1	105.4	At5g05440	830427	unknown protein	F:molecular_function unknown;P:unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
9.8	99.1	47.8	At4g00050	828175	UNE10 (unfertilized embryo sac 10)	F:transcription factor activity, DNA binding;P:double fertilization forming a zygote and endosperm, regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
9.8	99.1	21.9	At4g24240	828525	WRKY7	Encodes a Ca-dependent calmodulin binding protein. Sequence similarity to the WRKY transcription factor gene family.	O.I.	C.G.	H.G.
9.7	99.1	50.4	At2g26980	817240	CIPK3 (CBL-INTERACTING PROTEIN KINASE 3)	encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers.	O.I.	C.G.	H.G.
9.7	99.1	24.2	At3g44970	823632	cytochrome P450 family protein	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:endomembrane system;MPBFOAV	O.I.	C.G.	H.G.
9.5	99.1	180.8	At3g48360	823994	BT2 (BTB AND TAZ DOMAIN PROTEIN 2)	encodes a protein (BT2) that is an essential component of the TAC1-mediated telomerase activation pathway. Acts redundantly with BT3 and BT1 during female gametophyte development and with BT3 during male gametophyte development.	O.I.	C.G.	H.G.
9.5	99.1	63.1	At5g53970	835480	aminotransferase, putative	encodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatment	O.I.	C.G.	H.G.
9.4	99.1	37.9	At4g27030	828811	small conjugating protein ligase	F:small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:chloroplast;MOPBV	O.I.	C.G.	H.G.
9.3	99.1	33.1	At5g08350	830733	GRAM domain-containing protein / ABA-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.2	99.1	148.6	At5g47560	834806	TDT (TONOPLAST DICARBOXYLATE TRANSPORTER)	Encodes a tonoplast malate/fumarate transporter.	O.I.	C.G.	H.G.
9.2	99.1	28.1	At3g17609	821027	HYH (HY5-HOMOLOG)	F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO	O.I.	C.G.	H.G.
9.1	99.1	33.0	At2g13610	815846	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV	O.I.	C.G.	H.G.
9.0	99.1	153.3	At5g65010	836625	ASN2 (ASPARAGINE SYNTHETASE 2)	Encodes asparagine synthetase (ASN2).	O.I.	C.G.	H.G.
8.9	99.0	36.6	At1g75100	843847	JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1)	Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin. Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known.	O.I.	C.G.	H.G.
8.9	99.0	25.4	At1g53090	841743	SPA4 (SPA1-RELATED 4)	Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants.	O.I.	C.G.	H.G.
8.7	99.0	45.0	At5g59750	836096	riboflavin biosynthesis protein, putative	F:3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity;P:riboflavin biosynthetic process;C:chloroplast;BOFAP	O.I.	C.G.	H.G.
8.6	99.0	205.5	At5g56870	835789	BGAL4 (beta-galactosidase 4)	F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PBMFOA	O.I.	C.G.	H.G.
8.6	99.0	60.6	At3g22060	821768	receptor protein kinase-related	contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069, however this protein does not have the protein kinase domain	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-MEXP-475-raw-cel-680982332
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-475-raw-cel-680982332 GSE experiment -

GSM ID -

Assay name E-MEXP-475-raw-cel-680982332

GSE experiment -