CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-449-raw-cel-676423036

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
72.3 99.9 77.4 At5g58310 835943 MES18 (METHYL ESTERASE 18) Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
57.5 99.8 115.1 At2g23910 816923 cinnamoyl-CoA reductase-related F:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
32.1 99.7 70.0 At1g65060 842814 4CL3 encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate. O.I. C.G. H.G.
30.0 99.7 87.3 At2g36885 818261 unknown protein F:molecular_function unknown;P:unknown;C:chloroplast;BOP O.I. C.G. H.G.
24.0 99.6 577.9 At2g42540 818854 COR15A (COLD-REGULATED 15A) A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope. O.I. C.G. H.G.
19.9 99.6 104.1 At5g60540 836175 PDX2 (PYRIDOXINE BIOSYNTHESIS 2) Encodes a protein predicted to function in tandem with PDX1 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis. PDX2 is predicted to function as glutaminase within the complex. O.I. C.G. H.G.
19.2 99.6 292.2 At3g22840 821855 ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN) Encodes an early light-inducible protein. O.I. C.G. H.G.
19.0 99.5 138.8 At1g06000 837109 UDP-glucoronosyl/UDP-glucosyl transferase family protein encodes a flavonol-7-O-rhamnosyltransferase involved in the formation of rhamnosylated flavonols O.I. C.G. H.G.
19.0 99.5 28.0 At1g65560 842867 allyl alcohol dehydrogenase, putative F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
18.9 99.5 29.1 At5g52320 835308 CYP96A4 member of CYP96A O.I. C.G. H.G.
18.4 99.5 280.2 At2g42530 818853 COR15B (COLD REGULATED 15B) F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF O.I. C.G. H.G.
16.4 99.5 76.3 At2g34600 818025 JAZ7 (JASMONATE-ZIM-DOMAIN PROTEIN 7) F:molecular_function unknown;P:response to jasmonic acid stimulus, response to chitin;C:cellular_component unknown;P O.I. C.G. H.G.
16.1 99.5 185.5 At2g40100 818599 LHCB4.3 (light harvesting complex PSII) Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II O.I. C.G. H.G.
15.1 99.4 160.3 At5g08640 830765 FLS (FLAVONOL SYNTHASE) Encodes a flavonol synthase that catalyzes formation of flavonols from dihydroflavonols. O.I. C.G. H.G.
14.6 99.4 40.6 At1g07050 837216 CONSTANS-like protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF O.I. C.G. H.G.
14.5 99.4 135.3 At5g48880 834946 PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2) Encodes a peroxisomal 3-keto-acyl-CoA thiolase 2 precursor. EC2.3.1.16 thiolases. AT5G48880.1 is named PKT1 and AT5G48880.2 is named PKT2. O.I. C.G. H.G.
14.3 99.4 26.9 At4g27657 828879 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
12.6 99.3 124.9 At2g36835 818256 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;P O.I. C.G. H.G.
12.4 99.3 57.5 At5g07990 830693 TT7 (TRANSPARENT TESTA 7) Required for flavonoid 3' hydroxylase activity. O.I. C.G. H.G.
11.5 99.3 85.4 At3g55120 824678 TT5 (TRANSPARENT TESTA 5) Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems. O.I. C.G. H.G.
11.4 99.3 54.6 At3g01440 821143 oxygen evolving enhancer 3 (PsbQ) family protein F:calcium ion binding;P:photosynthesis, light reaction;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex;P O.I. C.G. H.G.
11.3 99.3 83.3 At5g62210 836342 embryo-specific protein-related F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFVBA O.I. C.G. H.G.
11.2 99.2 9.6 At1g09950 837529 transcription factor-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
10.9 99.2 176.0 At2g38210 818400 PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4) F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPM O.I. C.G. H.G.
10.8 99.2 199.8 At3g51240 824287 F3H (FLAVANONE 3-HYDROXYLASE) Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis. O.I. C.G. H.G.
10.7 99.2 84.9 At4g01080 827902 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
10.6 99.2 128.4 At1g72450 843577 JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6) JAZ6 transcript levels rise in response to a jasmonate stimulus and a GFP:JAZ6 fusion protein localizes to the nucleus. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ6:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. O.I. C.G. H.G.
10.5 99.2 91.6 At5g56600 835761 PRF3 (PROFILIN 3) Encodes profilin3, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Originally known as profilin5, and later named profilin3. Expressed in vegetative organs. O.I. C.G. H.G.
10.3 99.2 46.5 At1g06690 837179 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity, ATPase activity, ATP binding;P:oxidation reduction;C:chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;BOMFPA O.I. C.G. H.G.
10.3 99.2 19.6 At2g32640 817824 unknown protein F:unknown;P:unknown;C:chloroplast;BPO O.I. C.G. H.G.
10.1 99.2 301.9 At2g28900 817439 ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1) Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment. O.I. C.G. H.G.
10.0 99.2 450.6 At5g13930 831241 TT4 (TRANSPARENT TESTA 4) Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism. O.I. C.G. H.G.
9.9 99.1 13.8 At1g52770 841710 phototropic-responsive NPH3 family protein F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
9.3 99.1 64.7 At2g36145 818187 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;P O.I. C.G. H.G.
9.2 99.1 69.4 At5g05270 830409 chalcone-flavanone isomerase family protein F:chalcone isomerase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;P O.I. C.G. H.G.
8.9 99.0 304.4 At5g59320 836051 LTP3 (LIPID TRANSFER PROTEIN 3) Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
8.8 99.0 41.1 At5g56980 835800 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM O.I. C.G. H.G.
8.7 99.0 175.1 At1g17100 838280 SOUL heme-binding family protein F:binding;P:biological_process unknown;C:plasma membrane, vacuole;OMPBA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
72.3	99.9	77.4	At5g58310	835943	MES18 (METHYL ESTERASE 18)	Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
57.5	99.8	115.1	At2g23910	816923	cinnamoyl-CoA reductase-related	F:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
32.1	99.7	70.0	At1g65060	842814	4CL3	encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate.	O.I.	C.G.	H.G.
30.0	99.7	87.3	At2g36885	818261	unknown protein	F:molecular_function unknown;P:unknown;C:chloroplast;BOP	O.I.	C.G.	H.G.
24.0	99.6	577.9	At2g42540	818854	COR15A (COLD-REGULATED 15A)	A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.	O.I.	C.G.	H.G.
19.9	99.6	104.1	At5g60540	836175	PDX2 (PYRIDOXINE BIOSYNTHESIS 2)	Encodes a protein predicted to function in tandem with PDX1 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis. PDX2 is predicted to function as glutaminase within the complex.	O.I.	C.G.	H.G.
19.2	99.6	292.2	At3g22840	821855	ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN)	Encodes an early light-inducible protein.	O.I.	C.G.	H.G.
19.0	99.5	138.8	At1g06000	837109	UDP-glucoronosyl/UDP-glucosyl transferase family protein	encodes a flavonol-7-O-rhamnosyltransferase involved in the formation of rhamnosylated flavonols	O.I.	C.G.	H.G.
19.0	99.5	28.0	At1g65560	842867	allyl alcohol dehydrogenase, putative	F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
18.9	99.5	29.1	At5g52320	835308	CYP96A4	member of CYP96A	O.I.	C.G.	H.G.
18.4	99.5	280.2	At2g42530	818853	COR15B (COLD REGULATED 15B)	F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF	O.I.	C.G.	H.G.
16.4	99.5	76.3	At2g34600	818025	JAZ7 (JASMONATE-ZIM-DOMAIN PROTEIN 7)	F:molecular_function unknown;P:response to jasmonic acid stimulus, response to chitin;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.1	99.5	185.5	At2g40100	818599	LHCB4.3 (light harvesting complex PSII)	Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II	O.I.	C.G.	H.G.
15.1	99.4	160.3	At5g08640	830765	FLS (FLAVONOL SYNTHASE)	Encodes a flavonol synthase that catalyzes formation of flavonols from dihydroflavonols.	O.I.	C.G.	H.G.
14.6	99.4	40.6	At1g07050	837216	CONSTANS-like protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF	O.I.	C.G.	H.G.
14.5	99.4	135.3	At5g48880	834946	PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2)	Encodes a peroxisomal 3-keto-acyl-CoA thiolase 2 precursor. EC2.3.1.16 thiolases. AT5G48880.1 is named PKT1 and AT5G48880.2 is named PKT2.	O.I.	C.G.	H.G.
14.3	99.4	26.9	At4g27657	828879	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
12.6	99.3	124.9	At2g36835	818256	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;P	O.I.	C.G.	H.G.
12.4	99.3	57.5	At5g07990	830693	TT7 (TRANSPARENT TESTA 7)	Required for flavonoid 3' hydroxylase activity.	O.I.	C.G.	H.G.
11.5	99.3	85.4	At3g55120	824678	TT5 (TRANSPARENT TESTA 5)	Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems.	O.I.	C.G.	H.G.
11.4	99.3	54.6	At3g01440	821143	oxygen evolving enhancer 3 (PsbQ) family protein	F:calcium ion binding;P:photosynthesis, light reaction;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast, oxygen evolving complex;P	O.I.	C.G.	H.G.
11.3	99.3	83.3	At5g62210	836342	embryo-specific protein-related	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFVBA	O.I.	C.G.	H.G.
11.2	99.2	9.6	At1g09950	837529	transcription factor-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
10.9	99.2	176.0	At2g38210	818400	PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4)	F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPM	O.I.	C.G.	H.G.
10.8	99.2	199.8	At3g51240	824287	F3H (FLAVANONE 3-HYDROXYLASE)	Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis.	O.I.	C.G.	H.G.
10.7	99.2	84.9	At4g01080	827902	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
10.6	99.2	128.4	At1g72450	843577	JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)	JAZ6 transcript levels rise in response to a jasmonate stimulus and a GFP:JAZ6 fusion protein localizes to the nucleus. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ6:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation.	O.I.	C.G.	H.G.
10.5	99.2	91.6	At5g56600	835761	PRF3 (PROFILIN 3)	Encodes profilin3, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Originally known as profilin5, and later named profilin3. Expressed in vegetative organs.	O.I.	C.G.	H.G.
10.3	99.2	46.5	At1g06690	837179	aldo/keto reductase family protein	F:oxidoreductase activity, aldo-keto reductase activity, ATPase activity, ATP binding;P:oxidation reduction;C:chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;BOMFPA	O.I.	C.G.	H.G.
10.3	99.2	19.6	At2g32640	817824	unknown protein	F:unknown;P:unknown;C:chloroplast;BPO	O.I.	C.G.	H.G.
10.1	99.2	301.9	At2g28900	817439	ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1)	Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment.	O.I.	C.G.	H.G.
10.0	99.2	450.6	At5g13930	831241	TT4 (TRANSPARENT TESTA 4)	Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism.	O.I.	C.G.	H.G.
9.9	99.1	13.8	At1g52770	841710	phototropic-responsive NPH3 family protein	F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.3	99.1	64.7	At2g36145	818187	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;P	O.I.	C.G.	H.G.
9.2	99.1	69.4	At5g05270	830409	chalcone-flavanone isomerase family protein	F:chalcone isomerase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;P	O.I.	C.G.	H.G.
8.9	99.0	304.4	At5g59320	836051	LTP3 (LIPID TRANSFER PROTEIN 3)	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
8.8	99.0	41.1	At5g56980	835800	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM	O.I.	C.G.	H.G.
8.7	99.0	175.1	At1g17100	838280	SOUL heme-binding family protein	F:binding;P:biological_process unknown;C:plasma membrane, vacuole;OMPBA	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-MEXP-449-raw-cel-676423036
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-449-raw-cel-676423036 GSE experiment -

GSM ID -

Assay name E-MEXP-449-raw-cel-676423036

GSE experiment -