CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-449-raw-cel-676422999

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
82.1 99.9 265.6 At1g02820 839304 late embryogenesis abundant 3 family protein / LEA3 family protein F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P O.I. C.G. H.G.
67.8 99.9 337.3 At3g56290 824796 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
34.0 99.7 370.9 At4g14690 827119 ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2) Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis. O.I. C.G. H.G.
29.5 99.7 38.8 At2g15020 815991 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
28.5 99.7 67.5 At4g31870 829316 ATGPX7 (glutathione peroxidase 7) Encodes glutathione peroxidase. O.I. C.G. H.G.
25.4 99.6 335.8 At3g22840 821855 ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN) Encodes an early light-inducible protein. O.I. C.G. H.G.
24.8 99.6 72.3 At1g06690 837179 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity, ATPase activity, ATP binding;P:oxidation reduction;C:chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;BOMFPA O.I. C.G. H.G.
23.8 99.6 101.2 At3g44450 823570 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
23.5 99.6 44.1 At5g58310 835943 MES18 (METHYL ESTERASE 18) Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
19.3 99.6 16.4 At1g78440 844180 ATGA2OX1 (gibberellin 2-oxidase 1) Encodes a gibberellin 2-oxidase. O.I. C.G. H.G.
18.1 99.5 226.7 At2g38210 818400 PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4) F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPM O.I. C.G. H.G.
17.5 99.5 97.6 At5g60540 836175 PDX2 (PYRIDOXINE BIOSYNTHESIS 2) Encodes a protein predicted to function in tandem with PDX1 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis. PDX2 is predicted to function as glutaminase within the complex. O.I. C.G. H.G.
16.0 99.5 122.3 At3g61220 825294 short-chain dehydrogenase/reductase (SDR) family protein F:(-)-menthol dehydrogenase activity, oxidoreductase activity, (+)-neomenthol dehydrogenase activity;P:defense response;C:plasma membrane;BOMFPA O.I. C.G. H.G.
14.7 99.4 39.3 At2g41040 818703 methyltransferase-related F:methyltransferase activity;P:metabolic process;C:chloroplast, plastoglobule;BOAPFM O.I. C.G. H.G.
14.0 99.4 35.7 At2g27420 817287 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF O.I. C.G. H.G.
13.8 99.4 227.7 At1g53670 841804 MSRB1 (methionine sulfoxide reductase B 1) F:peptide-methionine-(S)-S-oxide reductase activity;P:response to oxidative stress, N-terminal protein myristoylation;C:chloroplast stroma, chloroplast;OBMPFAV O.I. C.G. H.G.
13.4 99.4 24.5 At5g52320 835308 CYP96A4 member of CYP96A O.I. C.G. H.G.
12.1 99.3 436.8 At5g01600 831720 ATFER1 Encodes a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. O.I. C.G. H.G.
12.0 99.3 205.9 At1g17100 838280 SOUL heme-binding family protein F:binding;P:biological_process unknown;C:plasma membrane, vacuole;OMPBA O.I. C.G. H.G.
11.9 99.3 97.8 At5g56600 835761 PRF3 (PROFILIN 3) Encodes profilin3, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Originally known as profilin5, and later named profilin3. Expressed in vegetative organs. O.I. C.G. H.G.
11.4 99.3 87.7 At4g01080 827902 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
11.1 99.2 75.1 At5g17050 831568 UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2) The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flavonols such as kaempferol and quercetin are accepted substrates. O.I. C.G. H.G.
10.8 99.2 25.4 At3g52740 824440 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.7 99.2 114.8 At2g34460 818009 flavin reductase-related F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;BOPMFA O.I. C.G. H.G.
10.7 99.2 13.5 At3g14395 820661 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.2 99.2 376.2 At2g42540 818854 COR15A (COLD-REGULATED 15A) A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope. O.I. C.G. H.G.
10.1 99.2 121.5 At3g56090 824775 ATFER3 (ferritin 3) Encodes FERRITIN 3, AtFER3. Ferritins are a class of 24-mer multi-meric proteins found in all kingdoms of life. Function as the main iron store in mammals. Evidence suggests that Arabidopsis ferritins are essential to protect cells against oxidative damage, but they do not constitute the major iron pool. O.I. C.G. H.G.
10.0 99.2 145.6 At5g51720 835246 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPO O.I. C.G. H.G.
9.5 99.1 33.3 At1g78510 844187 SPS1 (solanesyl diphosphate synthase 1) Encodes a protein with solanesyl diphosphate synthase activity. O.I. C.G. H.G.
9.4 99.1 108.0 At2g36835 818256 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;P O.I. C.G. H.G.
9.4 99.1 62.6 At5g53970 835480 aminotransferase, putative encodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatment O.I. C.G. H.G.
9.3 99.1 59.4 At2g37240 818301 - F:unknown;P:biological_process unknown;C:chloroplast;MPBOF O.I. C.G. H.G.
9.3 99.1 29.5 At1g76570 843990 chlorophyll A-B binding family protein F:chlorophyll binding;P:response to blue light, response to far red light, photosynthesis;C:light-harvesting complex, chloroplast, membrane;POM O.I. C.G. H.G.
9.3 99.1 14.2 At1g65870 842898 disease resistance-responsive family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cell wall;P O.I. C.G. H.G.
9.1 99.1 164.3 At4g28660 828984 PSB28 (PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN) Similar to PsbW subunit of photosystem II. O.I. C.G. H.G.
9.1 99.1 149.6 At1g65490 842861 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
9.1 99.1 27.6 At5g01790 831868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
9.0 99.1 46.8 At1g57590 842135 carboxylesterase F:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOB O.I. C.G. H.G.
8.9 99.0 171.2 At3g23400 821921 plastid-lipid associated protein PAP / fibrillin family protein F:structural molecule activity, transporter activity, binding;P:transport;C:in 8 components;PBO O.I. C.G. H.G.
8.9 99.0 36.9 At1g65060 842814 4CL3 encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate. O.I. C.G. H.G.
8.8 99.0 217.0 At4g26850 828792 VTC2 (vitamin c defective 2) Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light. O.I. C.G. H.G.
8.6 99.0 138.5 At5g35970 833589 DNA-binding protein, putative F:DNA binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BMOFPA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
82.1	99.9	265.6	At1g02820	839304	late embryogenesis abundant 3 family protein / LEA3 family protein	F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P	O.I.	C.G.	H.G.
67.8	99.9	337.3	At3g56290	824796	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
34.0	99.7	370.9	At4g14690	827119	ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)	Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis.	O.I.	C.G.	H.G.
29.5	99.7	38.8	At2g15020	815991	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
28.5	99.7	67.5	At4g31870	829316	ATGPX7 (glutathione peroxidase 7)	Encodes glutathione peroxidase.	O.I.	C.G.	H.G.
25.4	99.6	335.8	At3g22840	821855	ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN)	Encodes an early light-inducible protein.	O.I.	C.G.	H.G.
24.8	99.6	72.3	At1g06690	837179	aldo/keto reductase family protein	F:oxidoreductase activity, aldo-keto reductase activity, ATPase activity, ATP binding;P:oxidation reduction;C:chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;BOMFPA	O.I.	C.G.	H.G.
23.8	99.6	101.2	At3g44450	823570	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
23.5	99.6	44.1	At5g58310	835943	MES18 (METHYL ESTERASE 18)	Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
19.3	99.6	16.4	At1g78440	844180	ATGA2OX1 (gibberellin 2-oxidase 1)	Encodes a gibberellin 2-oxidase.	O.I.	C.G.	H.G.
18.1	99.5	226.7	At2g38210	818400	PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4)	F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPM	O.I.	C.G.	H.G.
17.5	99.5	97.6	At5g60540	836175	PDX2 (PYRIDOXINE BIOSYNTHESIS 2)	Encodes a protein predicted to function in tandem with PDX1 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis. PDX2 is predicted to function as glutaminase within the complex.	O.I.	C.G.	H.G.
16.0	99.5	122.3	At3g61220	825294	short-chain dehydrogenase/reductase (SDR) family protein	F:(-)-menthol dehydrogenase activity, oxidoreductase activity, (+)-neomenthol dehydrogenase activity;P:defense response;C:plasma membrane;BOMFPA	O.I.	C.G.	H.G.
14.7	99.4	39.3	At2g41040	818703	methyltransferase-related	F:methyltransferase activity;P:metabolic process;C:chloroplast, plastoglobule;BOAPFM	O.I.	C.G.	H.G.
14.0	99.4	35.7	At2g27420	817287	cysteine proteinase, putative	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF	O.I.	C.G.	H.G.
13.8	99.4	227.7	At1g53670	841804	MSRB1 (methionine sulfoxide reductase B 1)	F:peptide-methionine-(S)-S-oxide reductase activity;P:response to oxidative stress, N-terminal protein myristoylation;C:chloroplast stroma, chloroplast;OBMPFAV	O.I.	C.G.	H.G.
13.4	99.4	24.5	At5g52320	835308	CYP96A4	member of CYP96A	O.I.	C.G.	H.G.
12.1	99.3	436.8	At5g01600	831720	ATFER1	Encodes a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.	O.I.	C.G.	H.G.
12.0	99.3	205.9	At1g17100	838280	SOUL heme-binding family protein	F:binding;P:biological_process unknown;C:plasma membrane, vacuole;OMPBA	O.I.	C.G.	H.G.
11.9	99.3	97.8	At5g56600	835761	PRF3 (PROFILIN 3)	Encodes profilin3, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Originally known as profilin5, and later named profilin3. Expressed in vegetative organs.	O.I.	C.G.	H.G.
11.4	99.3	87.7	At4g01080	827902	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
11.1	99.2	75.1	At5g17050	831568	UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)	The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flavonols such as kaempferol and quercetin are accepted substrates.	O.I.	C.G.	H.G.
10.8	99.2	25.4	At3g52740	824440	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.7	99.2	114.8	At2g34460	818009	flavin reductase-related	F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;BOPMFA	O.I.	C.G.	H.G.
10.7	99.2	13.5	At3g14395	820661	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.2	99.2	376.2	At2g42540	818854	COR15A (COLD-REGULATED 15A)	A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.	O.I.	C.G.	H.G.
10.1	99.2	121.5	At3g56090	824775	ATFER3 (ferritin 3)	Encodes FERRITIN 3, AtFER3. Ferritins are a class of 24-mer multi-meric proteins found in all kingdoms of life. Function as the main iron store in mammals. Evidence suggests that Arabidopsis ferritins are essential to protect cells against oxidative damage, but they do not constitute the major iron pool.	O.I.	C.G.	H.G.
10.0	99.2	145.6	At5g51720	835246	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPO	O.I.	C.G.	H.G.
9.5	99.1	33.3	At1g78510	844187	SPS1 (solanesyl diphosphate synthase 1)	Encodes a protein with solanesyl diphosphate synthase activity.	O.I.	C.G.	H.G.
9.4	99.1	108.0	At2g36835	818256	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;P	O.I.	C.G.	H.G.
9.4	99.1	62.6	At5g53970	835480	aminotransferase, putative	encodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatment	O.I.	C.G.	H.G.
9.3	99.1	59.4	At2g37240	818301	-	F:unknown;P:biological_process unknown;C:chloroplast;MPBOF	O.I.	C.G.	H.G.
9.3	99.1	29.5	At1g76570	843990	chlorophyll A-B binding family protein	F:chlorophyll binding;P:response to blue light, response to far red light, photosynthesis;C:light-harvesting complex, chloroplast, membrane;POM	O.I.	C.G.	H.G.
9.3	99.1	14.2	At1g65870	842898	disease resistance-responsive family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cell wall;P	O.I.	C.G.	H.G.
9.1	99.1	164.3	At4g28660	828984	PSB28 (PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN)	Similar to PsbW subunit of photosystem II.	O.I.	C.G.	H.G.
9.1	99.1	149.6	At1g65490	842861	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
9.1	99.1	27.6	At5g01790	831868	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
9.0	99.1	46.8	At1g57590	842135	carboxylesterase	F:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOB	O.I.	C.G.	H.G.
8.9	99.0	171.2	At3g23400	821921	plastid-lipid associated protein PAP / fibrillin family protein	F:structural molecule activity, transporter activity, binding;P:transport;C:in 8 components;PBO	O.I.	C.G.	H.G.
8.9	99.0	36.9	At1g65060	842814	4CL3	encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate.	O.I.	C.G.	H.G.
8.8	99.0	217.0	At4g26850	828792	VTC2 (vitamin c defective 2)	Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light.	O.I.	C.G.	H.G.
8.6	99.0	138.5	At5g35970	833589	DNA-binding protein, putative	F:DNA binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BMOFPA	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-MEXP-449-raw-cel-676422999
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-449-raw-cel-676422999 GSE experiment -

GSM ID -

Assay name E-MEXP-449-raw-cel-676422999

GSE experiment -