CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-432-raw-cel-590864395

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
621.4 100.0 363.4 At5g61850 836307 LFY (LEAFY) Encodes transcriptional regulator that promotes the transition to flowering.Involved in floral meristem development. LFY is involved in the regulation of AP3 expression, and appears to bring the F-box protein UFO to the AP3 promoter. O.I. C.G. H.G.
486.5 100.0 40.3 At1g31630 840050 AGL86 (AGAMOUS-LIKE 86) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFB O.I. C.G. H.G.
310.3 100.0 45.4 At5g55800 835674 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POM O.I. C.G. H.G.
299.9 100.0 197.1 At1g01900 839318 SBTI1.1 Encodes AtSBT1.1, a subtilisin-like serine protease. Cleaves the phytosulfokine AtPSK4, a growth promoting peptide. O.I. C.G. H.G.
116.3 99.9 60.7 At5g48330 834886 regulator of chromosome condensation (RCC1) family protein F:binding;P:biological_process unknown;C:unknown;MOBPFAV O.I. C.G. H.G.
113.4 99.9 47.0 At3g14910 820720 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO O.I. C.G. H.G.
71.9 99.9 42.6 At4g38210 829977 ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20) expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
69.2 99.9 35.5 At2g40200 818611 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFB O.I. C.G. H.G.
66.7 99.8 24.2 At1g17665 838343 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OPMF O.I. C.G. H.G.
56.8 99.8 89.3 At4g40045 830167 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
40.9 99.8 109.5 At5g40610 834060 glycerol-3-phosphate dehydrogenase (NAD+) / GPDH F:in 9 functions;P:oxidation reduction, glycerol-3-phosphate metabolic process, glycerol-3-phosphate catabolic process, carbohydrate metabolic process, metabolic process;C:chloroplast, glycerol-3-phosphate dehydrogenase complex, cytoplasm;BOMFPA O.I. C.G. H.G.
37.2 99.7 32.0 At3g48080 823963 lipase class 3 family protein / disease resistance protein-related F:lipase activity, triacylglycerol lipase activity, signal transducer activity;P:lipid metabolic process;C:cellular_component unknown;POB O.I. C.G. H.G.
37.0 99.7 88.6 At1g02450 837800 NIMIN1 (NIM1-INTERACTING 1) NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression. O.I. C.G. H.G.
35.2 99.7 13.1 At1g61160 842409 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
31.5 99.7 94.7 At4g02540 827919 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;POMF O.I. C.G. H.G.
31.4 99.7 57.1 At1g73805 843716 calmodulin binding F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
30.0 99.7 41.6 At4g21610 828248 LOL2 (LSD ONE LIKE 2) Contains the same novel zinc finger motif with LSD1, a negative regulator of cell death and defense response. Due to differential splicing, it encodes two different proteins, one of which contains an additional, putative DNA binding motif. Northern analysis demonstrated that LOL2 transcripts containing the additional DNA binding motif are predominantly upregulated after treatment with both virulent and avirulent Pseudomonas syringae pv maculicola strains. O.I. C.G. H.G.
28.6 99.7 42.3 At2g45560 819164 CYP76C1 cytochrome P450 monooxygenase O.I. C.G. H.G.
28.1 99.7 22.9 At4g38670 830023 pathogenesis-related thaumatin family protein F:unknown;P:response to other organism;C:unknown;PMFBOV O.I. C.G. H.G.
27.9 99.7 37.5 At3g55390 824705 integral membrane family protein F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
27.6 99.7 51.7 At1g45160 841084 kinase F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA O.I. C.G. H.G.
26.4 99.7 14.0 At3g62430 825416 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
25.6 99.7 125.3 At5g13740 831219 ZIF1 (ZINC INDUCED FACILITATOR 1) F:carbohydrate transmembrane transporter activity, tetracycline:hydrogen antiporter activity, sugar:hydrogen symporter activity;P:response to nematode;C:integral to membrane, membrane;BOFMAP O.I. C.G. H.G.
21.6 99.6 11.1 At4g15070 827170 DC1 domain-containing protein F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
21.0 99.6 205.8 At3g17790 821047 PAP17 F:phosphatase activity, protein serine/threonine phosphatase activity, acid phosphatase activity;P:response to hydrogen peroxide, cellular phosphate ion homeostasis;C:cell surface;MOBPFA O.I. C.G. H.G.
20.7 99.6 26.3 At2g40700 818665 DEAD/DEAH box helicase, putative (RH17) F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:unknown;BOMFPAV O.I. C.G. H.G.
18.4 99.5 25.1 At4g14660 827116 NRPE7 Non-catalytic subunit specific to DNA-directed RNA polymerase V; homologous to budding yeast RPB7 O.I. C.G. H.G.
17.7 99.5 32.8 At3g05650 819732 AtRLP32 (Receptor Like Protein 32) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
17.2 99.5 81.2 At1g73800 - - O.I. C.G. H.G.
17.0 99.5 148.8 At3g56710 824838 SIB1 (SIGMA FACTOR BINDING PROTEIN 1) Sig1 binding protein; interacts with Sig1R4. As well as Sig1, SibI is imported into chloroplasts and its expression is light-dependent in mature chloroplasts. O.I. C.G. H.G.
16.6 99.5 144.8 At5g56760 835778 ATSERAT1 Encodes a cytosolic serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. O.I. C.G. H.G.
15.9 99.5 65.6 At5g01240 831866 amino acid permease, putative F:transporter activity;P:amino acid transport;C:membrane;PFMO O.I. C.G. H.G.
15.6 99.5 58.1 At3g06780 819863 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA O.I. C.G. H.G.
15.4 99.5 17.5 At3g09780 820136 CCR1 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 1) F:protein serine/threonine kinase activity, receptor activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
15.2 99.4 52.1 At5g01500 831861 mitochondrial substrate carrier family protein encodes an ATP/ADP carrier that is located to the thylakoid membrane involved in providing ATP during thylakoid biogenesis and turnover O.I. C.G. H.G.
14.9 99.4 34.4 At5g55170 835610 SUMO3 (SMALL UBIQUITIN-LIKE MODIFIER 3) Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. O.I. C.G. H.G.
14.7 99.4 25.3 At3g23110 821886 AtRLP37 (Receptor Like Protein 37) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
14.4 99.4 82.0 At5g52540 835330 unknown protein F:unknown;P:unknown;C:chloroplast envelope;BOPA O.I. C.G. H.G.
14.3 99.4 255.3 At5g09440 830803 EXL4 (EXORDIUM LIKE 4) F:molecular_function unknown;P:biological_process unknown;C:membrane;PB O.I. C.G. H.G.
13.9 99.4 52.8 At5g64920 836616 CIP8 (COP1-INTERACTING PROTEIN 8) Encodes a RING-H2 protein that interacts with the RING finger domain of COP1. CIP8 exhibits a strong interaction with the E2 ubiquitin conjugating enzyme AtUBC8 through its N-terminal domain and promotes ubiquitination in an E2-dependent fashion in vitro. It is possible that the AtUBC8-CIP8 module might interact with COP1 in vivo, thereby participating in proteasome-mediated degradation of HY5. O.I. C.G. H.G.
13.9 99.4 20.3 At3g62780 825453 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOVFB O.I. C.G. H.G.
13.7 99.4 178.0 At3g44990 823634 XTR8 (XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8) xyloglucan endo-transglycosylase O.I. C.G. H.G.
13.5 99.4 23.2 At1g05880 837098 nucleic acid binding / protein binding / structural molecule/ zinc ion binding F:protein binding, structural molecule activity, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:tight junction;MOPF O.I. C.G. H.G.
13.3 99.4 39.1 At3g48090 823964 EDS1 (enhanced disease susceptibility 1) Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases. O.I. C.G. H.G.
13.2 99.4 14.7 At5g41650 834167 lactoylglutathione lyase family protein / glyoxalase I family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;PBO O.I. C.G. H.G.
12.7 99.3 54.5 At3g59010 825070 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
12.5 99.3 83.8 At1g30820 839964 CTP synthase, putative / UTP--ammonia ligase, putative F:CTP synthase activity, catalytic activity;P:pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process;C:unknown;OBMFAP O.I. C.G. H.G.
12.4 99.3 13.5 At3g53220 824488 thioredoxin family protein F:unknown;P:cell redox homeostasis;C:cellular_component unknown;BOMPFA O.I. C.G. H.G.
12.2 99.3 28.3 At1g14140 837973 mitochondrial substrate carrier family protein F:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOV O.I. C.G. H.G.
12.2 99.3 23.6 At5g47650 834816 ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) Encodes an ADP-ribose pyrophosphatase that confers enhanced tolerance to oxidative stress. O.I. C.G. H.G.
11.9 99.3 19.3 At1g15790 838148 unknown protein F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
11.9 99.3 16.7 At5g39940 833991 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPAF O.I. C.G. H.G.
11.9 99.3 11.9 At4g14610 3770075 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
11.9 99.3 5.1 At3g23010 821875 AtRLP36 (Receptor Like Protein 36) F:protein binding;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAV O.I. C.G. H.G.
11.5 99.3 121.7 At5g53450 835426 ORG1 (OBP3-responsive gene 1) F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;PMOFB O.I. C.G. H.G.
11.4 99.3 70.7 At1g28150 839709 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plastoglobule;BP O.I. C.G. H.G.
11.4 99.3 17.2 At2g26810 817222 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBA O.I. C.G. H.G.
11.3 99.3 24.6 At1g03030 839473 phosphoribulokinase/uridine kinase family protein F:kinase activity, phosphotransferase activity, alcohol group as acceptor, ATP binding;P:biosynthetic process;C:chloroplast;BOFMPA O.I. C.G. H.G.
11.3 99.3 20.3 At1g76500 843983 SOB3 (SUPPRESSOR OF PHYB-4#3) Encodes an AT hook domain containing protein. Identified in a screen of activation tagged lines that suppress the long-hypocotyl phenotype of a weak phyB allele. Affects cell elongation in the hypocotyl and leaves.Acts redundantly with ESC to modulate hypocotyl growth inhibition in response to light O.I. C.G. H.G.
11.3 99.3 10.7 At3g22900 821862 NRPD7 Non-catalytic subunit specific to DNA-directed RNA polymerase IV; homologous to budding yeast RPB7 O.I. C.G. H.G.
11.1 99.2 9.9 At3g08000 819991 RNA-binding protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBA O.I. C.G. H.G.
11.0 99.2 181.2 At3g56400 824807 WRKY70 member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of JA-signaling is partly executed by NPR1. O.I. C.G. H.G.
10.9 99.2 51.9 At4g26070 828713 MEK1 (MAP KINASE/ ERK KINASE 1) Member of MAP Kinase Kinase. Likely functions in a stress-activated MAPK pathway. Can phosphorylate the MAPK AtMPK4, in response to stress. Gets phosphorylated by MEKK1 in response to wounding. O.I. C.G. H.G.
10.9 99.2 15.6 At3g03680 821190 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPFVA O.I. C.G. H.G.
10.6 99.2 16.7 At1g34380 840340 5'-3' exonuclease family protein F:5'-3' exonuclease activity, DNA binding, catalytic activity;P:biological_process unknown;C:chloroplast;BOPV O.I. C.G. H.G.
10.4 99.2 54.9 At2g47840 819396 tic20 protein-related F:unknown;P:unknown;C:mitochondrion, chloroplast, plastid, chloroplast envelope;OBP O.I. C.G. H.G.
10.4 99.2 14.0 At2g23380 816870 CLF (CURLY LEAF) Similar to the product of the Polycomb-group gene Enhancer of zeste. Required for stable repression of AG and AP3. Putative role in cell fate determination. Involved in the control of leaf morphogenesis. mutants exhibit curled, involute leaves. AGAMOUS and APETALA3 are ectopically expressed in the mutant. O.I. C.G. H.G.
10.2 99.2 34.3 At1g74440 843785 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BFOP O.I. C.G. H.G.
10.2 99.2 15.6 At5g60730 836194 anion-transporting ATPase family protein F:ATP binding;P:cellular metal ion homeostasis, anion transport;C:membrane;BOAMFP O.I. C.G. H.G.
9.8 99.1 37.7 At4g25390 828642 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA O.I. C.G. H.G.
9.8 99.1 12.1 At3g57700 824939 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
9.7 99.1 24.4 At3g21580 821712 cobalt ion transmembrane transporter F:cobalt ion transmembrane transporter activity;P:cobalt ion transport, cobalamin biosynthetic process;C:chloroplast;BOPA O.I. C.G. H.G.
9.7 99.1 18.6 At1g49630 841387 ATPREP2 (ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2) Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed in flower, leaf and root. Not expressed in silique and shoot. O.I. C.G. H.G.
9.6 99.1 38.7 At5g05250 830407 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
9.6 99.1 19.0 At3g27580 822380 ATPK7 a member of a subfamily of Ser/Thr PKs in plants. O.I. C.G. H.G.
9.5 99.1 11.3 At5g48170 834869 SLY2 (SLEEPY2) encodes an F-box protein whose protein sequence is similar to SLY1, which belongs to SCF-SLY1 E3 ligase complex. SCF-SLY1 E3 ligase degrades DELLA proteins that are involved in promoting growth. Overexpression of SLY2 can partially compensate sly1-10 mutant phenotype of dwarfism. O.I. C.G. H.G.
9.5 99.1 9.0 At1g27060 839595 regulator of chromosome condensation (RCC1) family protein F:Ran GTPase binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAV O.I. C.G. H.G.
9.4 99.1 38.6 At3g19810 821518 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP O.I. C.G. H.G.
9.4 99.1 29.3 At2g37920 818368 emb1513 (embryo defective 1513) F:copper ion transmembrane transporter activity;P:embryonic development ending in seed dormancy;C:unknown;P O.I. C.G. H.G.
9.4 99.1 15.2 At3g28760 822508 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;AOBP O.I. C.G. H.G.
9.3 99.1 74.2 At3g57240 824891 BG3 (BETA-1,3-GLUCANASE 3) encodes a member of glycosyl hydrolase family 17 O.I. C.G. H.G.
9.3 99.1 16.6 At4g01860 827918 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPA O.I. C.G. H.G.
9.3 99.1 15.6 At3g24150 822001 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
9.1 99.1 8.8 At3g09310 820087 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPVM O.I. C.G. H.G.
9.0 99.1 70.2 At5g64030 836524 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:Golgi apparatus;OMBFPVA O.I. C.G. H.G.
9.0 99.1 30.3 At1g20030 838592 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PMFBOV O.I. C.G. H.G.
8.9 99.0 14.0 At5g56610 835762 dual specificity protein phosphatase family protein F:phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity;P:protein amino acid dephosphorylation, dephosphorylation;C:cellular_component unknown;MOBPFAV O.I. C.G. H.G.
8.8 99.0 62.7 At5g47320 834779 RPS19 (RIBOSOMAL PROTEIN S19) Nuclear encoded mitochondrial ribosome subunit. O.I. C.G. H.G.
8.7 99.0 38.2 At5g08400 830738 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP O.I. C.G. H.G.
8.7 99.0 25.6 At3g57320 824899 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
8.7 99.0 16.1 At5g09420 830801 ATTOC64-V (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V) F:amidase activity, binding, carbon-nitrogen ligase activity, with glutamine as amido-N-donor;P:protein targeting to mitochondrion;C:mitochondrion;BOMFPA O.I. C.G. H.G.
8.7 99.0 9.6 At5g24390 832510 RabGAP/TBC domain-containing protein F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular, chloroplast;MFOPB O.I. C.G. H.G.
8.6 99.0 67.4 At2g20270 816546 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:chloroplast, chloroplast stroma;BOPMFVA O.I. C.G. H.G.
8.6 99.0 46.2 At1g75370 843873 SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative F:transporter activity;P:transport;C:plasma membrane;MPFO O.I. C.G. H.G.
8.6 99.0 38.9 At4g08470 826406 MAPKKK10 member of MEKK subfamily O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
621.4	100.0	363.4	At5g61850	836307	LFY (LEAFY)	Encodes transcriptional regulator that promotes the transition to flowering.Involved in floral meristem development. LFY is involved in the regulation of AP3 expression, and appears to bring the F-box protein UFO to the AP3 promoter.	O.I.	C.G.	H.G.
486.5	100.0	40.3	At1g31630	840050	AGL86 (AGAMOUS-LIKE 86)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFB	O.I.	C.G.	H.G.
310.3	100.0	45.4	At5g55800	835674	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
299.9	100.0	197.1	At1g01900	839318	SBTI1.1	Encodes AtSBT1.1, a subtilisin-like serine protease. Cleaves the phytosulfokine AtPSK4, a growth promoting peptide.	O.I.	C.G.	H.G.
116.3	99.9	60.7	At5g48330	834886	regulator of chromosome condensation (RCC1) family protein	F:binding;P:biological_process unknown;C:unknown;MOBPFAV	O.I.	C.G.	H.G.
113.4	99.9	47.0	At3g14910	820720	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO	O.I.	C.G.	H.G.
71.9	99.9	42.6	At4g38210	829977	ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20)	expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
69.2	99.9	35.5	At2g40200	818611	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFB	O.I.	C.G.	H.G.
66.7	99.8	24.2	At1g17665	838343	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OPMF	O.I.	C.G.	H.G.
56.8	99.8	89.3	At4g40045	830167	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
40.9	99.8	109.5	At5g40610	834060	glycerol-3-phosphate dehydrogenase (NAD+) / GPDH	F:in 9 functions;P:oxidation reduction, glycerol-3-phosphate metabolic process, glycerol-3-phosphate catabolic process, carbohydrate metabolic process, metabolic process;C:chloroplast, glycerol-3-phosphate dehydrogenase complex, cytoplasm;BOMFPA	O.I.	C.G.	H.G.
37.2	99.7	32.0	At3g48080	823963	lipase class 3 family protein / disease resistance protein-related	F:lipase activity, triacylglycerol lipase activity, signal transducer activity;P:lipid metabolic process;C:cellular_component unknown;POB	O.I.	C.G.	H.G.
37.0	99.7	88.6	At1g02450	837800	NIMIN1 (NIM1-INTERACTING 1)	NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression.	O.I.	C.G.	H.G.
35.2	99.7	13.1	At1g61160	842409	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
31.5	99.7	94.7	At4g02540	827919	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;POMF	O.I.	C.G.	H.G.
31.4	99.7	57.1	At1g73805	843716	calmodulin binding	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
30.0	99.7	41.6	At4g21610	828248	LOL2 (LSD ONE LIKE 2)	Contains the same novel zinc finger motif with LSD1, a negative regulator of cell death and defense response. Due to differential splicing, it encodes two different proteins, one of which contains an additional, putative DNA binding motif. Northern analysis demonstrated that LOL2 transcripts containing the additional DNA binding motif are predominantly upregulated after treatment with both virulent and avirulent Pseudomonas syringae pv maculicola strains.	O.I.	C.G.	H.G.
28.6	99.7	42.3	At2g45560	819164	CYP76C1	cytochrome P450 monooxygenase	O.I.	C.G.	H.G.
28.1	99.7	22.9	At4g38670	830023	pathogenesis-related thaumatin family protein	F:unknown;P:response to other organism;C:unknown;PMFBOV	O.I.	C.G.	H.G.
27.9	99.7	37.5	At3g55390	824705	integral membrane family protein	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
27.6	99.7	51.7	At1g45160	841084	kinase	F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA	O.I.	C.G.	H.G.
26.4	99.7	14.0	At3g62430	825416	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
25.6	99.7	125.3	At5g13740	831219	ZIF1 (ZINC INDUCED FACILITATOR 1)	F:carbohydrate transmembrane transporter activity, tetracycline:hydrogen antiporter activity, sugar:hydrogen symporter activity;P:response to nematode;C:integral to membrane, membrane;BOFMAP	O.I.	C.G.	H.G.
21.6	99.6	11.1	At4g15070	827170	DC1 domain-containing protein	F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
21.0	99.6	205.8	At3g17790	821047	PAP17	F:phosphatase activity, protein serine/threonine phosphatase activity, acid phosphatase activity;P:response to hydrogen peroxide, cellular phosphate ion homeostasis;C:cell surface;MOBPFA	O.I.	C.G.	H.G.
20.7	99.6	26.3	At2g40700	818665	DEAD/DEAH box helicase, putative (RH17)	F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
18.4	99.5	25.1	At4g14660	827116	NRPE7	Non-catalytic subunit specific to DNA-directed RNA polymerase V; homologous to budding yeast RPB7	O.I.	C.G.	H.G.
17.7	99.5	32.8	At3g05650	819732	AtRLP32 (Receptor Like Protein 32)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
17.2	99.5	81.2	At1g73800		-	-	O.I.	C.G.	H.G.
17.0	99.5	148.8	At3g56710	824838	SIB1 (SIGMA FACTOR BINDING PROTEIN 1)	Sig1 binding protein; interacts with Sig1R4. As well as Sig1, SibI is imported into chloroplasts and its expression is light-dependent in mature chloroplasts.	O.I.	C.G.	H.G.
16.6	99.5	144.8	At5g56760	835778	ATSERAT1	Encodes a cytosolic serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system.	O.I.	C.G.	H.G.
15.9	99.5	65.6	At5g01240	831866	amino acid permease, putative	F:transporter activity;P:amino acid transport;C:membrane;PFMO	O.I.	C.G.	H.G.
15.6	99.5	58.1	At3g06780	819863	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA	O.I.	C.G.	H.G.
15.4	99.5	17.5	At3g09780	820136	CCR1 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 1)	F:protein serine/threonine kinase activity, receptor activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
15.2	99.4	52.1	At5g01500	831861	mitochondrial substrate carrier family protein	encodes an ATP/ADP carrier that is located to the thylakoid membrane involved in providing ATP during thylakoid biogenesis and turnover	O.I.	C.G.	H.G.
14.9	99.4	34.4	At5g55170	835610	SUMO3 (SMALL UBIQUITIN-LIKE MODIFIER 3)	Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets.	O.I.	C.G.	H.G.
14.7	99.4	25.3	At3g23110	821886	AtRLP37 (Receptor Like Protein 37)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
14.4	99.4	82.0	At5g52540	835330	unknown protein	F:unknown;P:unknown;C:chloroplast envelope;BOPA	O.I.	C.G.	H.G.
14.3	99.4	255.3	At5g09440	830803	EXL4 (EXORDIUM LIKE 4)	F:molecular_function unknown;P:biological_process unknown;C:membrane;PB	O.I.	C.G.	H.G.
13.9	99.4	52.8	At5g64920	836616	CIP8 (COP1-INTERACTING PROTEIN 8)	Encodes a RING-H2 protein that interacts with the RING finger domain of COP1. CIP8 exhibits a strong interaction with the E2 ubiquitin conjugating enzyme AtUBC8 through its N-terminal domain and promotes ubiquitination in an E2-dependent fashion in vitro. It is possible that the AtUBC8-CIP8 module might interact with COP1 in vivo, thereby participating in proteasome-mediated degradation of HY5.	O.I.	C.G.	H.G.
13.9	99.4	20.3	At3g62780	825453	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOVFB	O.I.	C.G.	H.G.
13.7	99.4	178.0	At3g44990	823634	XTR8 (XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8)	xyloglucan endo-transglycosylase	O.I.	C.G.	H.G.
13.5	99.4	23.2	At1g05880	837098	nucleic acid binding / protein binding / structural molecule/ zinc ion binding	F:protein binding, structural molecule activity, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:tight junction;MOPF	O.I.	C.G.	H.G.
13.3	99.4	39.1	At3g48090	823964	EDS1 (enhanced disease susceptibility 1)	Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases.	O.I.	C.G.	H.G.
13.2	99.4	14.7	At5g41650	834167	lactoylglutathione lyase family protein / glyoxalase I family protein	F:catalytic activity;P:metabolic process;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
12.7	99.3	54.5	At3g59010	825070	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
12.5	99.3	83.8	At1g30820	839964	CTP synthase, putative / UTP--ammonia ligase, putative	F:CTP synthase activity, catalytic activity;P:pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process;C:unknown;OBMFAP	O.I.	C.G.	H.G.
12.4	99.3	13.5	At3g53220	824488	thioredoxin family protein	F:unknown;P:cell redox homeostasis;C:cellular_component unknown;BOMPFA	O.I.	C.G.	H.G.
12.2	99.3	28.3	At1g14140	837973	mitochondrial substrate carrier family protein	F:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOV	O.I.	C.G.	H.G.
12.2	99.3	23.6	At5g47650	834816	ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2)	Encodes an ADP-ribose pyrophosphatase that confers enhanced tolerance to oxidative stress.	O.I.	C.G.	H.G.
11.9	99.3	19.3	At1g15790	838148	unknown protein	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
11.9	99.3	16.7	At5g39940	833991	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPAF	O.I.	C.G.	H.G.
11.9	99.3	11.9	At4g14610	3770075	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
11.9	99.3	5.1	At3g23010	821875	AtRLP36 (Receptor Like Protein 36)	F:protein binding;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAV	O.I.	C.G.	H.G.
11.5	99.3	121.7	At5g53450	835426	ORG1 (OBP3-responsive gene 1)	F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;PMOFB	O.I.	C.G.	H.G.
11.4	99.3	70.7	At1g28150	839709	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plastoglobule;BP	O.I.	C.G.	H.G.
11.4	99.3	17.2	At2g26810	817222	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBA	O.I.	C.G.	H.G.
11.3	99.3	24.6	At1g03030	839473	phosphoribulokinase/uridine kinase family protein	F:kinase activity, phosphotransferase activity, alcohol group as acceptor, ATP binding;P:biosynthetic process;C:chloroplast;BOFMPA	O.I.	C.G.	H.G.
11.3	99.3	20.3	At1g76500	843983	SOB3 (SUPPRESSOR OF PHYB-4#3)	Encodes an AT hook domain containing protein. Identified in a screen of activation tagged lines that suppress the long-hypocotyl phenotype of a weak phyB allele. Affects cell elongation in the hypocotyl and leaves.Acts redundantly with ESC to modulate hypocotyl growth inhibition in response to light	O.I.	C.G.	H.G.
11.3	99.3	10.7	At3g22900	821862	NRPD7	Non-catalytic subunit specific to DNA-directed RNA polymerase IV; homologous to budding yeast RPB7	O.I.	C.G.	H.G.
11.1	99.2	9.9	At3g08000	819991	RNA-binding protein, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBA	O.I.	C.G.	H.G.
11.0	99.2	181.2	At3g56400	824807	WRKY70	member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of JA-signaling is partly executed by NPR1.	O.I.	C.G.	H.G.
10.9	99.2	51.9	At4g26070	828713	MEK1 (MAP KINASE/ ERK KINASE 1)	Member of MAP Kinase Kinase. Likely functions in a stress-activated MAPK pathway. Can phosphorylate the MAPK AtMPK4, in response to stress. Gets phosphorylated by MEKK1 in response to wounding.	O.I.	C.G.	H.G.
10.9	99.2	15.6	At3g03680	821190	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPFVA	O.I.	C.G.	H.G.
10.6	99.2	16.7	At1g34380	840340	5'-3' exonuclease family protein	F:5'-3' exonuclease activity, DNA binding, catalytic activity;P:biological_process unknown;C:chloroplast;BOPV	O.I.	C.G.	H.G.
10.4	99.2	54.9	At2g47840	819396	tic20 protein-related	F:unknown;P:unknown;C:mitochondrion, chloroplast, plastid, chloroplast envelope;OBP	O.I.	C.G.	H.G.
10.4	99.2	14.0	At2g23380	816870	CLF (CURLY LEAF)	Similar to the product of the Polycomb-group gene Enhancer of zeste. Required for stable repression of AG and AP3. Putative role in cell fate determination. Involved in the control of leaf morphogenesis. mutants exhibit curled, involute leaves. AGAMOUS and APETALA3 are ectopically expressed in the mutant.	O.I.	C.G.	H.G.
10.2	99.2	34.3	At1g74440	843785	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BFOP	O.I.	C.G.	H.G.
10.2	99.2	15.6	At5g60730	836194	anion-transporting ATPase family protein	F:ATP binding;P:cellular metal ion homeostasis, anion transport;C:membrane;BOAMFP	O.I.	C.G.	H.G.
9.8	99.1	37.7	At4g25390	828642	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA	O.I.	C.G.	H.G.
9.8	99.1	12.1	At3g57700	824939	protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
9.7	99.1	24.4	At3g21580	821712	cobalt ion transmembrane transporter	F:cobalt ion transmembrane transporter activity;P:cobalt ion transport, cobalamin biosynthetic process;C:chloroplast;BOPA	O.I.	C.G.	H.G.
9.7	99.1	18.6	At1g49630	841387	ATPREP2 (ARABIDOPSIS THALIANA PRESEQUENCE PROTEASE 2)	Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed in flower, leaf and root. Not expressed in silique and shoot.	O.I.	C.G.	H.G.
9.6	99.1	38.7	At5g05250	830407	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
9.6	99.1	19.0	At3g27580	822380	ATPK7	a member of a subfamily of Ser/Thr PKs in plants.	O.I.	C.G.	H.G.
9.5	99.1	11.3	At5g48170	834869	SLY2 (SLEEPY2)	encodes an F-box protein whose protein sequence is similar to SLY1, which belongs to SCF-SLY1 E3 ligase complex. SCF-SLY1 E3 ligase degrades DELLA proteins that are involved in promoting growth. Overexpression of SLY2 can partially compensate sly1-10 mutant phenotype of dwarfism.	O.I.	C.G.	H.G.
9.5	99.1	9.0	At1g27060	839595	regulator of chromosome condensation (RCC1) family protein	F:Ran GTPase binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAV	O.I.	C.G.	H.G.
9.4	99.1	38.6	At3g19810	821518	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP	O.I.	C.G.	H.G.
9.4	99.1	29.3	At2g37920	818368	emb1513 (embryo defective 1513)	F:copper ion transmembrane transporter activity;P:embryonic development ending in seed dormancy;C:unknown;P	O.I.	C.G.	H.G.
9.4	99.1	15.2	At3g28760	822508	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;AOBP	O.I.	C.G.	H.G.
9.3	99.1	74.2	At3g57240	824891	BG3 (BETA-1,3-GLUCANASE 3)	encodes a member of glycosyl hydrolase family 17	O.I.	C.G.	H.G.
9.3	99.1	16.6	At4g01860	827918	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPA	O.I.	C.G.	H.G.
9.3	99.1	15.6	At3g24150	822001	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
9.1	99.1	8.8	At3g09310	820087	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPVM	O.I.	C.G.	H.G.
9.0	99.1	70.2	At5g64030	836524	dehydration-responsive protein-related	F:unknown;P:biological_process unknown;C:Golgi apparatus;OMBFPVA	O.I.	C.G.	H.G.
9.0	99.1	30.3	At1g20030	838592	pathogenesis-related thaumatin family protein	F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PMFBOV	O.I.	C.G.	H.G.
8.9	99.0	14.0	At5g56610	835762	dual specificity protein phosphatase family protein	F:phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity;P:protein amino acid dephosphorylation, dephosphorylation;C:cellular_component unknown;MOBPFAV	O.I.	C.G.	H.G.
8.8	99.0	62.7	At5g47320	834779	RPS19 (RIBOSOMAL PROTEIN S19)	Nuclear encoded mitochondrial ribosome subunit.	O.I.	C.G.	H.G.
8.7	99.0	38.2	At5g08400	830738	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP	O.I.	C.G.	H.G.
8.7	99.0	25.6	At3g57320	824899	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
8.7	99.0	16.1	At5g09420	830801	ATTOC64-V (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V)	F:amidase activity, binding, carbon-nitrogen ligase activity, with glutamine as amido-N-donor;P:protein targeting to mitochondrion;C:mitochondrion;BOMFPA	O.I.	C.G.	H.G.
8.7	99.0	9.6	At5g24390	832510	RabGAP/TBC domain-containing protein	F:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular, chloroplast;MFOPB	O.I.	C.G.	H.G.
8.6	99.0	67.4	At2g20270	816546	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:chloroplast, chloroplast stroma;BOPMFVA	O.I.	C.G.	H.G.
8.6	99.0	46.2	At1g75370	843873	SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative	F:transporter activity;P:transport;C:plasma membrane;MPFO	O.I.	C.G.	H.G.
8.6	99.0	38.9	At4g08470	826406	MAPKKK10	member of MEKK subfamily	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-MEXP-432-raw-cel-590864395
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-432-raw-cel-590864395 GSE experiment -

GSM ID -

Assay name E-MEXP-432-raw-cel-590864395

GSE experiment -