CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-300-raw-cel-460515489

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
182.3 100.0 32.1 At5g53240 835405 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
106.6 99.9 64.6 At1g36180 840522 ACC2 (ACETYL-COA CARBOXYLASE 2) acetyl-CoA carboxylase 2 (ACC2) O.I. C.G. H.G.
52.2 99.8 119.1 At2g21640 816702 - Encodes a protein of unknown function that is a marker for oxidative stress response. O.I. C.G. H.G.
41.1 99.8 15.3 At4g05370 825885 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
32.0 99.7 100.8 At5g09570 830816 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMFO O.I. C.G. H.G.
31.8 99.7 13.5 At3g09160 820071 RNA recognition motif (RRM)-containing protein F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
25.6 99.7 17.5 At5g64060 836527 anac103 (Arabidopsis NAC domain containing protein 103) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
24.3 99.6 19.2 At4g36580 829810 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;OBMFPAV O.I. C.G. H.G.
22.0 99.6 9.9 At1g13330 837893 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFAPV O.I. C.G. H.G.
21.2 99.6 58.8 At2g04050 814939 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
21.1 99.6 30.8 At1g67120 843032 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor binding F:nucleoside-triphosphatase activity, ATPase activity, transcription factor binding, nucleotide binding, ATP binding;P:regulation of transcription, DNA-dependent, regulation of protein complex assembly;C:chloroplast envelope;OMBFPVA O.I. C.G. H.G.
20.4 99.6 21.1 At5g37130 833685 binding F:binding;P:biological_process unknown;C:apoplast;OBAMFP O.I. C.G. H.G.
20.4 99.6 20.0 At2g01860 814717 EMB975 (EMBRYO DEFECTIVE 975) F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POF O.I. C.G. H.G.
19.4 99.6 29.3 At5g24280 832495 - F:unknown;P:unknown;C:unknown;PMOBF O.I. C.G. H.G.
19.2 99.6 33.8 At5g57780 835886 - F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
18.7 99.5 33.6 At2g34357 2745580 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MOFBPV O.I. C.G. H.G.
18.7 99.5 33.5 At3g44970 823632 cytochrome P450 family protein F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:endomembrane system;MPBFOAV O.I. C.G. H.G.
18.3 99.5 15.5 At2g38720 818454 MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5) F:microtubule binding;P:microtubule polymerization, anaphase;C:cortical microtubule, microtubule, preprophase band, spindle, phragmoplast;MOBFPAV O.I. C.G. H.G.
17.5 99.5 79.8 At4g27585 828868 band 7 family protein F:unknown;P:biological_process unknown;C:mitochondrion, plastid, membrane;BOMPAFV O.I. C.G. H.G.
17.3 99.5 88.8 At2g22980 816829 serine-type carboxypeptidase F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO O.I. C.G. H.G.
17.0 99.5 10.8 At5g15700 831424 DNA-directed RNA polymerase (RPOT2) F:DNA-directed RNA polymerase activity, DNA binding;P:transcription;C:unknown;OFPMVB O.I. C.G. H.G.
16.5 99.5 35.6 At1g32870 840181 ANAC13 (Arabidopsis thaliana NAC domain protein 13) F:transcription factor activity;P:multicellular organismal development, response to UV-B, response to red light;C:cellular_component unknown;POMF O.I. C.G. H.G.
16.1 99.5 32.4 At4g15680 827245 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;MPFOB O.I. C.G. H.G.
15.7 99.5 36.3 At1g47210 841124 cyclin family protein F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus, cytoplasm;MPFOV O.I. C.G. H.G.
14.9 99.4 41.0 At5g42670 834276 agenet domain-containing protein F:RNA binding;P:biological_process unknown;C:unknown;PMO O.I. C.G. H.G.
14.6 99.4 20.5 At4g30990 829224 binding F:binding;P:biological_process unknown;C:Golgi apparatus;MFOP O.I. C.G. H.G.
14.3 99.4 15.1 At5g16930 831556 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;OMBFPAV O.I. C.G. H.G.
14.2 99.4 47.2 At3g61520 825325 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA O.I. C.G. H.G.
14.2 99.4 17.8 At5g02220 831792 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.2 99.4 12.1 At2g03130 814842 ribosomal protein L12 family protein F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMF O.I. C.G. H.G.
13.3 99.4 127.2 At5g54510 835539 DFL1 (DWARF IN LIGHT 1) Encodes an IAA-amido synthase that conjugates Ala, Asp, Phe, and Trp to auxin. Lines overexpressing this gene accumulate IAA-ASP and are hypersensitive to several auxins. Identified as a dominant mutation that displays shorter hypocotyls in light grown plants when compared to wild type siblings. Protein is similar to auxin inducible gene from pea (GH3). O.I. C.G. H.G.
13.0 99.4 16.5 At2g26630 3768014 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
12.9 99.3 258.3 At5g14920 831344 gibberellin-regulated family protein F:unknown;P:response to gibberellin stimulus;C:endomembrane system;MBOFPVA O.I. C.G. H.G.
12.8 99.3 11.1 At1g35617 840460 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVF O.I. C.G. H.G.
12.5 99.3 34.4 At4g33000 829437 CBL10 (CALCINEURIN B-LIKE 10) Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis. O.I. C.G. H.G.
12.5 99.3 23.2 At1g23280 838937 MAK16 protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
12.2 99.3 31.5 At4g34770 829629 auxin-responsive family protein F:unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
11.9 99.3 149.4 At5g56350 835735 pyruvate kinase, putative F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFA O.I. C.G. H.G.
11.9 99.3 35.3 At4g30610 829184 BRS1 (BRI1 SUPPRESSOR 1) Encodes a secreted glycosylated serine carboxypeptidase with broad substrate preference that is involved in brassinosteroid signalling via BRI1. It is proteolytically processed in vivo by a separate as yet unidentified protease. O.I. C.G. H.G.
11.9 99.3 17.7 At5g55580 835652 mitochondrial transcription termination factor family protein / mTERF family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOFVB O.I. C.G. H.G.
11.6 99.3 31.6 At4g21800 828268 QQT2 (quatre-quart2) Encodes QQT2. Required for early embryo development. qqt1 mutant lines are embryo-defective. Participates in the organization of microtubules during cell division. Interacts with QQT1 (encoded by AT5G22370). O.I. C.G. H.G.
11.4 99.3 47.0 At5g24160 832482 SQE6 (SQUALENE MONOXYGENASE 6) F:squalene monooxygenase activity, oxidoreductase activity, FAD binding;P:sterol biosynthetic process;C:endomembrane system, integral to membrane;OBFMPA O.I. C.G. H.G.
11.4 99.3 20.1 At5g14090 831258 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
11.3 99.3 38.5 At3g06530 819831 binding F:binding;P:unknown;C:chloroplast, vacuole;MFOPB O.I. C.G. H.G.
11.2 99.2 23.8 At5g51810 835256 GA20OX2 (GIBBERELLIN 20 OXIDASE 2) Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock. O.I. C.G. H.G.
11.1 99.2 20.4 At3g03060 821146 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:cell wall, plant-type cell wall;OMBFPAV O.I. C.G. H.G.
11.0 99.2 58.2 At1g59990 842293 DEAD/DEAH box helicase, putative (RH22) F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:biological_process unknown;C:chloroplast;BMOFPAV O.I. C.G. H.G.
10.6 99.2 67.7 At1g10170 837555 ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response. O.I. C.G. H.G.
10.5 99.2 10.1 At3g20710 821619 F-box protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.5 99.2 10.0 At1g36940 840603 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.3 99.2 13.7 At3g51180 824281 zinc finger (CCCH-type) family protein F:nucleic acid binding;P:biological_process unknown;C:unknown;MPFBOV O.I. C.G. H.G.
10.3 99.2 13.1 At2g29760 817526 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:chloroplast;POMFBVA O.I. C.G. H.G.
10.2 99.2 24.9 At5g45140 834550 NRPC2 Encodes a subunit of RNA polymerase III (aka RNA polymerase C). O.I. C.G. H.G.
10.1 99.2 13.7 At1g24090 839020 RNase H domain-containing protein F:ribonuclease H activity, nucleic acid binding;P:biological_process unknown;C:unknown;PBOAM O.I. C.G. H.G.
10.1 99.2 4.3 At4g04260 825742 bromo-adjacent homology (BAH) domain-containing protein F:DNA binding, zinc ion binding;P:unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
10.0 99.2 21.0 At2g21150 816650 XCT (XAP5 CIRCADIAN TIMEKEEPER) XAP5 family protein involved in light regulation of the circadian clock and photomorphogenesis. Nuclear localized. O.I. C.G. H.G.
10.0 99.2 11.4 At5g17270 831592 tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;OBMAFP O.I. C.G. H.G.
10.0 99.2 10.0 At3g16360 820883 AHP4 (HPT PHOSPHOTRANSMITTER 4) Encodes AHP4, a histidine-containing phosphotransmitter involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHP4 is one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6). O.I. C.G. H.G.
9.9 99.1 31.9 At3g49140 824075 - F:unknown;P:unknown;C:unknown;PBMOFVA O.I. C.G. H.G.
9.7 99.1 46.3 At5g55200 835613 co-chaperone grpE protein, putative F:ATP binding;P:protein folding;C:mitochondrion;BOMFPA O.I. C.G. H.G.
9.4 99.1 96.1 At1g06950 837205 TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110) Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chloroplast and chloroplast biogenesis. O.I. C.G. H.G.
9.4 99.1 37.6 At5g58960 836013 GIL1 (GRAVITROPIC IN THE LIGHT) Mutant plants display impaired light-regulation of the hypocotyl randomization response. O.I. C.G. H.G.
9.4 99.1 36.5 At2g05140 815062 phosphoribosylaminoimidazole carboxylase family protein / AIR carboxylase family protein F:phosphoribosylaminoimidazole carboxylase activity;P:'de novo' IMP biosynthetic process;C:phosphoribosylaminoimidazole carboxylase complex;BOAFMP O.I. C.G. H.G.
9.4 99.1 18.0 At3g53210 824487 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;OBPAM O.I. C.G. H.G.
9.2 99.1 90.7 At2g19800 816499 MIOX2 (MYO-INOSITOL OXYGENASE 2) Encodes a myo-inositol oxygenase family gene. O.I. C.G. H.G.
9.1 99.1 107.2 At3g27740 822396 CARA (CARBAMOYL PHOSPHATE SYNTHETASE A) carbamoyl phosphate synthetase small subunit mRNA (carA), O.I. C.G. H.G.
9.1 99.1 12.0 At4g26600 828767 nucleolar protein, putative F:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVA O.I. C.G. H.G.
9.1 99.1 11.4 At5g62940 836414 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;POMFB O.I. C.G. H.G.
9.1 99.1 3.9 At4g10560 826648 MEE53 (maternal effect embryo arrest 53) F:protein binding, zinc ion binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P O.I. C.G. H.G.
9.0 99.1 16.3 At5g09420 830801 ATTOC64-V (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V) F:amidase activity, binding, carbon-nitrogen ligase activity, with glutamine as amido-N-donor;P:protein targeting to mitochondrion;C:mitochondrion;BOMFPA O.I. C.G. H.G.
9.0 99.1 4.6 At5g32460 3771028 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown O.I. C.G. H.G.
8.9 99.0 30.7 At5g18570 831975 GTP1/OBG family protein F:GTP binding, nucleotide binding;P:unknown;C:intracellular, chloroplast;BOMFAPV O.I. C.G. H.G.
8.9 99.0 8.4 At4g16920 827400 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVA O.I. C.G. H.G.
8.8 99.0 44.1 At1g12860 837843 SCRM2 (SCREAM 2) Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation. O.I. C.G. H.G.
8.8 99.0 43.7 At4g22290 828324 ubiquitin thiolesterase F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PMBO O.I. C.G. H.G.
8.8 99.0 30.5 At4g27820 828895 BGLU9 (BETA GLUCOSIDASE 9) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:peroxisome;BOPMFA O.I. C.G. H.G.
8.8 99.0 6.8 At3g57130 824880 BOP1 (BLADE ON PETIOLE 1) ankyrin repeat family protein / BTB/POZ domain-containing protein, contains Pfam domain, PF00023: Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain. Lines carrying recessive mutations exhibit a number of visible defects, most pronounced being ectopic outgrowths of in leaf petioles of rosette leaves.Along with bop2, bop1 is required for nectary development and formation of normal abscission zones. O.I. C.G. H.G.
8.7 99.0 174.4 At4g37910 829947 mtHsc70-1 (mitochondrial heat shock protein 70-1) F:ATP binding;P:protein folding, response to cadmium ion, response to salt stress, response to heat;C:mitochondrion, cell wall, plasma membrane, mitochondrial matrix;OBMFPVA O.I. C.G. H.G.
8.7 99.0 83.0 At5g66140 836746 PAD2 (PROTEASOME ALPHA SUBUNIT D 2) Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation. O.I. C.G. H.G.
8.6 99.0 77.7 At2g15090 815998 KCS8 (3-KETOACYL-COA SYNTHASE 8) Encodes KCS8, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
8.6 99.0 32.3 At3g55510 824716 RBL (REBELOTE) F:unknown;P:floral meristem determinacy;C:nucleus;MFOP O.I. C.G. H.G.
8.6 99.0 30.6 At1g54120 841852 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
8.6 99.0 21.7 At1g12350 837789 ATCOAB (4-phospho-panto-thenoylcysteine synthetase) At1g12350 encodes phosphopantothenoylcysteine synthetase (phosphopantothenoylcysteine ligase). Its molecular function was shown to add cysteine forming (R)-4�-phospho-N-pantothenoylcysteine (PPC) O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
182.3	100.0	32.1	At5g53240	835405	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
106.6	99.9	64.6	At1g36180	840522	ACC2 (ACETYL-COA CARBOXYLASE 2)	acetyl-CoA carboxylase 2 (ACC2)	O.I.	C.G.	H.G.
52.2	99.8	119.1	At2g21640	816702	-	Encodes a protein of unknown function that is a marker for oxidative stress response.	O.I.	C.G.	H.G.
41.1	99.8	15.3	At4g05370	825885	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
32.0	99.7	100.8	At5g09570	830816	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMFO	O.I.	C.G.	H.G.
31.8	99.7	13.5	At3g09160	820071	RNA recognition motif (RRM)-containing protein	F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
25.6	99.7	17.5	At5g64060	836527	anac103 (Arabidopsis NAC domain containing protein 103)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.3	99.6	19.2	At4g36580	829810	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;OBMFPAV	O.I.	C.G.	H.G.
22.0	99.6	9.9	At1g13330	837893	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFAPV	O.I.	C.G.	H.G.
21.2	99.6	58.8	At2g04050	814939	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
21.1	99.6	30.8	At1g67120	843032	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor binding	F:nucleoside-triphosphatase activity, ATPase activity, transcription factor binding, nucleotide binding, ATP binding;P:regulation of transcription, DNA-dependent, regulation of protein complex assembly;C:chloroplast envelope;OMBFPVA	O.I.	C.G.	H.G.
20.4	99.6	21.1	At5g37130	833685	binding	F:binding;P:biological_process unknown;C:apoplast;OBAMFP	O.I.	C.G.	H.G.
20.4	99.6	20.0	At2g01860	814717	EMB975 (EMBRYO DEFECTIVE 975)	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POF	O.I.	C.G.	H.G.
19.4	99.6	29.3	At5g24280	832495	-	F:unknown;P:unknown;C:unknown;PMOBF	O.I.	C.G.	H.G.
19.2	99.6	33.8	At5g57780	835886	-	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
18.7	99.5	33.6	At2g34357	2745580	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MOFBPV	O.I.	C.G.	H.G.
18.7	99.5	33.5	At3g44970	823632	cytochrome P450 family protein	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:endomembrane system;MPBFOAV	O.I.	C.G.	H.G.
18.3	99.5	15.5	At2g38720	818454	MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5)	F:microtubule binding;P:microtubule polymerization, anaphase;C:cortical microtubule, microtubule, preprophase band, spindle, phragmoplast;MOBFPAV	O.I.	C.G.	H.G.
17.5	99.5	79.8	At4g27585	828868	band 7 family protein	F:unknown;P:biological_process unknown;C:mitochondrion, plastid, membrane;BOMPAFV	O.I.	C.G.	H.G.
17.3	99.5	88.8	At2g22980	816829	serine-type carboxypeptidase	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
17.0	99.5	10.8	At5g15700	831424	DNA-directed RNA polymerase (RPOT2)	F:DNA-directed RNA polymerase activity, DNA binding;P:transcription;C:unknown;OFPMVB	O.I.	C.G.	H.G.
16.5	99.5	35.6	At1g32870	840181	ANAC13 (Arabidopsis thaliana NAC domain protein 13)	F:transcription factor activity;P:multicellular organismal development, response to UV-B, response to red light;C:cellular_component unknown;POMF	O.I.	C.G.	H.G.
16.1	99.5	32.4	At4g15680	827245	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;MPFOB	O.I.	C.G.	H.G.
15.7	99.5	36.3	At1g47210	841124	cyclin family protein	F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus, cytoplasm;MPFOV	O.I.	C.G.	H.G.
14.9	99.4	41.0	At5g42670	834276	agenet domain-containing protein	F:RNA binding;P:biological_process unknown;C:unknown;PMO	O.I.	C.G.	H.G.
14.6	99.4	20.5	At4g30990	829224	binding	F:binding;P:biological_process unknown;C:Golgi apparatus;MFOP	O.I.	C.G.	H.G.
14.3	99.4	15.1	At5g16930	831556	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;OMBFPAV	O.I.	C.G.	H.G.
14.2	99.4	47.2	At3g61520	825325	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA	O.I.	C.G.	H.G.
14.2	99.4	17.8	At5g02220	831792	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.2	99.4	12.1	At2g03130	814842	ribosomal protein L12 family protein	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMF	O.I.	C.G.	H.G.
13.3	99.4	127.2	At5g54510	835539	DFL1 (DWARF IN LIGHT 1)	Encodes an IAA-amido synthase that conjugates Ala, Asp, Phe, and Trp to auxin. Lines overexpressing this gene accumulate IAA-ASP and are hypersensitive to several auxins. Identified as a dominant mutation that displays shorter hypocotyls in light grown plants when compared to wild type siblings. Protein is similar to auxin inducible gene from pea (GH3).	O.I.	C.G.	H.G.
13.0	99.4	16.5	At2g26630	3768014	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
12.9	99.3	258.3	At5g14920	831344	gibberellin-regulated family protein	F:unknown;P:response to gibberellin stimulus;C:endomembrane system;MBOFPVA	O.I.	C.G.	H.G.
12.8	99.3	11.1	At1g35617	840460	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVF	O.I.	C.G.	H.G.
12.5	99.3	34.4	At4g33000	829437	CBL10 (CALCINEURIN B-LIKE 10)	Encodes a member of the calcineurin B-like calcium sensor gene family. Mediates salt tolerance by regulating ion homeostasis in Arabidopsis.	O.I.	C.G.	H.G.
12.5	99.3	23.2	At1g23280	838937	MAK16 protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
12.2	99.3	31.5	At4g34770	829629	auxin-responsive family protein	F:unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
11.9	99.3	149.4	At5g56350	835735	pyruvate kinase, putative	F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFA	O.I.	C.G.	H.G.
11.9	99.3	35.3	At4g30610	829184	BRS1 (BRI1 SUPPRESSOR 1)	Encodes a secreted glycosylated serine carboxypeptidase with broad substrate preference that is involved in brassinosteroid signalling via BRI1. It is proteolytically processed in vivo by a separate as yet unidentified protease.	O.I.	C.G.	H.G.
11.9	99.3	17.7	At5g55580	835652	mitochondrial transcription termination factor family protein / mTERF family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
11.6	99.3	31.6	At4g21800	828268	QQT2 (quatre-quart2)	Encodes QQT2. Required for early embryo development. qqt1 mutant lines are embryo-defective. Participates in the organization of microtubules during cell division. Interacts with QQT1 (encoded by AT5G22370).	O.I.	C.G.	H.G.
11.4	99.3	47.0	At5g24160	832482	SQE6 (SQUALENE MONOXYGENASE 6)	F:squalene monooxygenase activity, oxidoreductase activity, FAD binding;P:sterol biosynthetic process;C:endomembrane system, integral to membrane;OBFMPA	O.I.	C.G.	H.G.
11.4	99.3	20.1	At5g14090	831258	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
11.3	99.3	38.5	At3g06530	819831	binding	F:binding;P:unknown;C:chloroplast, vacuole;MFOPB	O.I.	C.G.	H.G.
11.2	99.2	23.8	At5g51810	835256	GA20OX2 (GIBBERELLIN 20 OXIDASE 2)	Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock.	O.I.	C.G.	H.G.
11.1	99.2	20.4	At3g03060	821146	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:cell wall, plant-type cell wall;OMBFPAV	O.I.	C.G.	H.G.
11.0	99.2	58.2	At1g59990	842293	DEAD/DEAH box helicase, putative (RH22)	F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:biological_process unknown;C:chloroplast;BMOFPAV	O.I.	C.G.	H.G.
10.6	99.2	67.7	At1g10170	837555	ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1)	Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response.	O.I.	C.G.	H.G.
10.5	99.2	10.1	At3g20710	821619	F-box protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.5	99.2	10.0	At1g36940	840603	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.3	99.2	13.7	At3g51180	824281	zinc finger (CCCH-type) family protein	F:nucleic acid binding;P:biological_process unknown;C:unknown;MPFBOV	O.I.	C.G.	H.G.
10.3	99.2	13.1	At2g29760	817526	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:unknown;C:chloroplast;POMFBVA	O.I.	C.G.	H.G.
10.2	99.2	24.9	At5g45140	834550	NRPC2	Encodes a subunit of RNA polymerase III (aka RNA polymerase C).	O.I.	C.G.	H.G.
10.1	99.2	13.7	At1g24090	839020	RNase H domain-containing protein	F:ribonuclease H activity, nucleic acid binding;P:biological_process unknown;C:unknown;PBOAM	O.I.	C.G.	H.G.
10.1	99.2	4.3	At4g04260	825742	bromo-adjacent homology (BAH) domain-containing protein	F:DNA binding, zinc ion binding;P:unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
10.0	99.2	21.0	At2g21150	816650	XCT (XAP5 CIRCADIAN TIMEKEEPER)	XAP5 family protein involved in light regulation of the circadian clock and photomorphogenesis. Nuclear localized.	O.I.	C.G.	H.G.
10.0	99.2	11.4	At5g17270	831592	tetratricopeptide repeat (TPR)-containing protein	F:binding;P:biological_process unknown;C:cellular_component unknown;OBMAFP	O.I.	C.G.	H.G.
10.0	99.2	10.0	At3g16360	820883	AHP4 (HPT PHOSPHOTRANSMITTER 4)	Encodes AHP4, a histidine-containing phosphotransmitter involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHP4 is one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	O.I.	C.G.	H.G.
9.9	99.1	31.9	At3g49140	824075	-	F:unknown;P:unknown;C:unknown;PBMOFVA	O.I.	C.G.	H.G.
9.7	99.1	46.3	At5g55200	835613	co-chaperone grpE protein, putative	F:ATP binding;P:protein folding;C:mitochondrion;BOMFPA	O.I.	C.G.	H.G.
9.4	99.1	96.1	At1g06950	837205	TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110)	Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chloroplast and chloroplast biogenesis.	O.I.	C.G.	H.G.
9.4	99.1	37.6	At5g58960	836013	GIL1 (GRAVITROPIC IN THE LIGHT)	Mutant plants display impaired light-regulation of the hypocotyl randomization response.	O.I.	C.G.	H.G.
9.4	99.1	36.5	At2g05140	815062	phosphoribosylaminoimidazole carboxylase family protein / AIR carboxylase family protein	F:phosphoribosylaminoimidazole carboxylase activity;P:'de novo' IMP biosynthetic process;C:phosphoribosylaminoimidazole carboxylase complex;BOAFMP	O.I.	C.G.	H.G.
9.4	99.1	18.0	At3g53210	824487	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;OBPAM	O.I.	C.G.	H.G.
9.2	99.1	90.7	At2g19800	816499	MIOX2 (MYO-INOSITOL OXYGENASE 2)	Encodes a myo-inositol oxygenase family gene.	O.I.	C.G.	H.G.
9.1	99.1	107.2	At3g27740	822396	CARA (CARBAMOYL PHOSPHATE SYNTHETASE A)	carbamoyl phosphate synthetase small subunit mRNA (carA),	O.I.	C.G.	H.G.
9.1	99.1	12.0	At4g26600	828767	nucleolar protein, putative	F:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVA	O.I.	C.G.	H.G.
9.1	99.1	11.4	At5g62940	836414	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
9.1	99.1	3.9	At4g10560	826648	MEE53 (maternal effect embryo arrest 53)	F:protein binding, zinc ion binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.0	99.1	16.3	At5g09420	830801	ATTOC64-V (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V)	F:amidase activity, binding, carbon-nitrogen ligase activity, with glutamine as amido-N-donor;P:protein targeting to mitochondrion;C:mitochondrion;BOMFPA	O.I.	C.G.	H.G.
9.0	99.1	4.6	At5g32460	3771028	DNA binding	F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown	O.I.	C.G.	H.G.
8.9	99.0	30.7	At5g18570	831975	GTP1/OBG family protein	F:GTP binding, nucleotide binding;P:unknown;C:intracellular, chloroplast;BOMFAPV	O.I.	C.G.	H.G.
8.9	99.0	8.4	At4g16920	827400	disease resistance protein (TIR-NBS-LRR class), putative	F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVA	O.I.	C.G.	H.G.
8.8	99.0	44.1	At1g12860	837843	SCRM2 (SCREAM 2)	Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation.	O.I.	C.G.	H.G.
8.8	99.0	43.7	At4g22290	828324	ubiquitin thiolesterase	F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PMBO	O.I.	C.G.	H.G.
8.8	99.0	30.5	At4g27820	828895	BGLU9 (BETA GLUCOSIDASE 9)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:peroxisome;BOPMFA	O.I.	C.G.	H.G.
8.8	99.0	6.8	At3g57130	824880	BOP1 (BLADE ON PETIOLE 1)	ankyrin repeat family protein / BTB/POZ domain-containing protein, contains Pfam domain, PF00023: Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain. Lines carrying recessive mutations exhibit a number of visible defects, most pronounced being ectopic outgrowths of in leaf petioles of rosette leaves.Along with bop2, bop1 is required for nectary development and formation of normal abscission zones.	O.I.	C.G.	H.G.
8.7	99.0	174.4	At4g37910	829947	mtHsc70-1 (mitochondrial heat shock protein 70-1)	F:ATP binding;P:protein folding, response to cadmium ion, response to salt stress, response to heat;C:mitochondrion, cell wall, plasma membrane, mitochondrial matrix;OBMFPVA	O.I.	C.G.	H.G.
8.7	99.0	83.0	At5g66140	836746	PAD2 (PROTEASOME ALPHA SUBUNIT D 2)	Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation.	O.I.	C.G.	H.G.
8.6	99.0	77.7	At2g15090	815998	KCS8 (3-KETOACYL-COA SYNTHASE 8)	Encodes KCS8, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
8.6	99.0	32.3	At3g55510	824716	RBL (REBELOTE)	F:unknown;P:floral meristem determinacy;C:nucleus;MFOP	O.I.	C.G.	H.G.
8.6	99.0	30.6	At1g54120	841852	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
8.6	99.0	21.7	At1g12350	837789	ATCOAB (4-phospho-panto-thenoylcysteine synthetase)	At1g12350 encodes phosphopantothenoylcysteine synthetase (phosphopantothenoylcysteine ligase). Its molecular function was shown to add cysteine forming (R)-4�-phospho-N-pantothenoylcysteine (PPC)	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-MEXP-300-raw-cel-460515489
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-300-raw-cel-460515489 GSE experiment -

GSM ID -

Assay name E-MEXP-300-raw-cel-460515489

GSE experiment -