Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-MEXP-285-raw-cel-440783213
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
393.9100.063.6At5g26120832681ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2)F:hydrolase activity, acting on glycosyl bonds, alpha-N-arabinofuranosidase activity;P:L-arabinose metabolic process;C:endomembrane system;BFPOO.I.C.G.H.G.
286.9100.091.2At1g43640840948AtTLP5 (TUBBY LIKE PROTEIN 5)Member of TLP familyO.I.C.G.H.G.
272.7100.050.2At3g17600821026IAA31 (INDOLE-3-ACETIC ACID INDUCIBLE 31)Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA31 shares several residues with the conserved domain II region, believed to act as a degron in many of the rapidly degraded Aux/IAA family members. An IAA31 fusion protein is quite long-lived, but can be degraded more rapidly in the presence of auxin. Unlike many other family members, IAA31 transcript levels do not rise in response to auxin. Nevertheless, overexpression of IAA31 leads to defects in auxin-related processes such as gravitropism, root development, shoot development, and cotyledon vascular development.O.I.C.G.H.G.
263.6100.0138.7At4g26790828786GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
250.4100.079.5At5g07260830617homeobox protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
240.6100.073.0At5g13670831212nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;BOPAMO.I.C.G.H.G.
236.7100.0119.1At2g25540817092CESA10 (CELLULOSE SYNTHASE 10)cellulose synthaseO.I.C.G.H.G.
231.1100.0150.0At4g26590828766OPT5 (OLIGOPEPTIDE TRANSPORTER 5)oligopeptide transporterO.I.C.G.H.G.
228.7100.0148.1At1g10540837595xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:membrane;BOMPFAVO.I.C.G.H.G.
225.7100.086.1At4g22110828300alcohol dehydrogenase, putativeF:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAVO.I.C.G.H.G.
221.7100.092.8At2g28650817414ATEXO70H8 (exocyst subunit EXO70 family protein H8)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.C.G.H.G.
205.5100.0217.2At5g50750835147RGP4 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 4)reversibly glycosylated polypeptide RGP-4 (RGP4)O.I.C.G.H.G.
203.2100.091.8At2g23550816887MES6 (METHYL ESTERASE 6)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.O.I.C.G.H.G.
202.9100.0152.6At3g59845825154NADP-dependent oxidoreductase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress;C:unknown;BOFMPAO.I.C.G.H.G.
189.8100.054.3At1g205008386384-coumarate-CoA ligaseF:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
174.1100.0100.6At5g47530834803auxin-responsive protein, putativeF:unknown;P:multicellular organismal development;C:membrane;PMFOBO.I.C.G.H.G.
164.7100.098.5At5g39220833918hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOMPAFO.I.C.G.H.G.
151.899.965.5At1g34580840362monosaccharide transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAO.I.C.G.H.G.
147.199.9275.1At5g49180834977pectinesterase family proteinEncodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds.O.I.C.G.H.G.
146.199.916.8At3g21850821739ASK9 (ARABIDOPSIS SKP1-LIKE 9)one of Arabidopsis SKP1 homologuesO.I.C.G.H.G.
144.299.9294.1At3g20210821565DELTA-VPEEncodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat.O.I.C.G.H.G.
142.799.923.6At5g52500835326unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
140.699.9101.3At2g22620816793lyaseF:lyase activity;P:carbohydrate metabolic process;C:unknown;PFBOO.I.C.G.H.G.
137.999.996.4At3g05400819704sugar transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOAO.I.C.G.H.G.
137.999.930.7At5g39130833906germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOBO.I.C.G.H.G.
133.999.9206.1At1g61720842469BAN (BANYULS)Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.O.I.C.G.H.G.
132.499.9188.1At5g07990830693TT7 (TRANSPARENT TESTA 7)Required for flavonoid 3' hydroxylase activity.O.I.C.G.H.G.
130.999.984.7At5g55250835618IAMT1 (IAA CARBOXYLMETHYLTRANSFERASE 1)Encodes an enzyme which specifically converts IAA to its methyl ester form MelIAA. This gene belongs to the family of carboxyl methyltransferases whose members catalyze the transfer of the methyl group from S-adenosyl-L-methionine to carboxylic acid-containing substrates to form small molecule methyl esters. Expression of TCP genes is downregulated in mutant iamt1-D.O.I.C.G.H.G.
127.799.9207.5At4g12890826901gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFO.I.C.G.H.G.
125.499.959.2At5g47150834761YDG/SRA domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBFO.I.C.G.H.G.
121.499.930.0At3g62610825435ATMYB11 (MYB DOMAIN PROTEIN 11)Member of the R2R3 factor gene family.O.I.C.G.H.G.
120.799.9227.6At3g16920820947chitinaseF:chitinase activity;P:cell wall macromolecule catabolic process;C:unknown;PBMOFO.I.C.G.H.G.
120.099.961.1At1g71690843495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.C.G.H.G.
116.699.989.2At1g79840844323GL2 (GLABRA 2)Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.O.I.C.G.H.G.
113.399.987.7At5g38180833798protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
112.899.965.6At4g24260828527ATGH9A3 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A3)Encodes a protein with similarity to endo-1,4-b-glucanases. KOR3 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.O.I.C.G.H.G.
111.099.9116.3At1g19640838551JMT (JASMONIC ACID CARBOXYL METHYLTRANSFERASE)Encodes a S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase that catalyzes the formation of methyljasmonate from jasmonic acid. Its expression is induced in response to wounding or methyljasmonate treatment.O.I.C.G.H.G.
109.099.9143.0At1g23200838928pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFAOMO.I.C.G.H.G.
104.699.9241.4At2g46960819310CYP709B1member of CYP709BO.I.C.G.H.G.
102.899.9111.5At1g65480842859FT (FLOWERING LOCUS T)FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1.O.I.C.G.H.G.
102.099.929.6At5g53100835390oxidoreductase, putativeF:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
101.499.9288.9At1g56100842062pectinesterase inhibitor domain-containing proteinF:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAVO.I.C.G.H.G.
99.299.972.2At5g58500835963LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5)F:molecular_function unknown;P:biological_process unknown;C:unknown;PMO.I.C.G.H.G.
96.599.951.9At1g19940838583AtGH9B5 (Arabidopsis thaliana Glycosyl Hydrolase 9B5)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
96.499.933.4At2g32370817798HDG3 (HOMEODOMAIN GLABROUS 3)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with ATML1 and PDF2, it is involved in cotyledon development.O.I.C.G.H.G.
94.299.981.0At5g60140836136transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;BOMFPVAO.I.C.G.H.G.
90.699.9296.5At4g15210827185BAM5 (BETA-AMYLASE 5)cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.O.I.C.G.H.G.
90.599.985.8At3g08900820039RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3)Encodes a reversible autoglycosylated protein peripherally associated with cell membranes. Highly expressed in roots ans suspension-cultured cells.O.I.C.G.H.G.
90.299.9129.1At3g25290822123auxin-responsive family proteinF:unknown;P:multicellular organismal development;C:plasma membrane, membrane;PFMOBO.I.C.G.H.G.
88.599.948.5At1g71890843520SUC5Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation.O.I.C.G.H.G.
87.999.9233.2At1g29050839779unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
84.999.945.7At3g50620824225nodulation protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
83.799.9193.8At5g59845836106gibberellin-regulated family proteinF:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.C.G.H.G.
83.699.977.7At1g16390838209ATOCT3 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:unknown;C:membrane;BMFPOAO.I.C.G.H.G.
83.299.931.6At5g39090833901transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PFOO.I.C.G.H.G.
81.499.9136.7At4g18780827612IRX1 (IRREGULAR XYLEM 1)Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.O.I.C.G.H.G.
81.099.990.0At5g57920835903plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
79.999.944.6At4g30110829134HMA2encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zincO.I.C.G.H.G.
79.699.966.8At5g54400835528methyltransferaseF:methyltransferase activity;P:metabolic process;C:plasma membrane;BOAFPMO.I.C.G.H.G.
73.899.944.7At5g51490835223pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOMO.I.C.G.H.G.
73.699.997.2At4g11180826720disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
73.499.9135.3At4g33790829521CER4 (ECERIFERUM 4)Encodes an alcohol-forming fatty acyl-CoA reductase, involved in cuticular wax biosynthesis. Lines carrying recessive mutations are deficient in primary alcohol and have glossy stem surfaces.O.I.C.G.H.G.
73.199.9294.0At4g12910826903scpl20 (serine carboxypeptidase-like 20)F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOBO.I.C.G.H.G.
69.599.9139.8At5g48100834862TT10 (TRANSPARENT TESTA 10)Encodes a protein that is similar to laccase-like polyphenol oxidases. Involved in lignin and flavonoids biosynthesis. It has four conserved copper binding domains. Expressed in developing testa, where it colocalizes with the flavonoid end products proanthocyanidins and flavonols. Mutant plants exhibited a delay in developmentally determined browning of the testa, characterized by the pale brown color of seed coat. The tt10 mutant seeds accumulate more epicatechin monomers and more soluble proanthocyanidins than wild-type seeds. Flavonol composition was also affected in tt10 seeds, which exhibited a higher ratio of quercetin rhamnoside monomers versus dimers than wild-type seeds.O.I.C.G.H.G.
69.599.9110.0At1g04645839459self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
69.199.9341.6At5g38160833796protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
69.099.947.1At3g25260822120proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;BPMOFO.I.C.G.H.G.
68.599.919.7At1g62900842591O-methyltransferase, putativeF:O-methyltransferase activity;P:unknown;C:cytosol;PBFOMO.I.C.G.H.G.
66.899.819.6At1g35625840462peptidase/ protein binding / zinc ion bindingF:peptidase activity, protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFBVO.I.C.G.H.G.
66.499.845.3At3g13640820568ATRLI1member of RLI subfamilyO.I.C.G.H.G.
64.599.830.9At1g27080839597NRT1.6 (NITRATE TRANSPORTER 1.6)Encodes a protein with low-affinity nitrate transporter activity that is expressed in the vascular tissue of the funiculus and the silique. This plasma membrane-localized enzyme is predicted to have 12 transmembrane domains. Plants lacking NRT1.6 have reduced levels of nitrate in their seeds and have increased levels of early embryonic developmental defects and seed abortion.O.I.C.G.H.G.
62.799.888.4At5g56300835729GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2)A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT2, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development.O.I.C.G.H.G.
62.599.843.2At5g18290831947SIP1Belongs to a family of plant aquaporins.Similar to yeast and radish aquaporins. Located on ERO.I.C.G.H.G.
61.899.886.3At1g78970844237LUP1 (LUPEOL SYNTHASE 1)Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17β-dammarenyl cation.O.I.C.G.H.G.
61.899.824.1At5g05030830385unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFBO.I.C.G.H.G.
61.799.8122.8At1g04220839578KCS2 (3-KETOACYL-COA SYNTHASE 2)Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
61.599.826.6At4g09500826534glycosyltransferase family proteinF:transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMOBFO.I.C.G.H.G.
61.299.881.1At2g35760818148integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
60.899.862.0At5g54530835541unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
60.399.857.8At3g60900825261FLA10F:unknown;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;OBPMFVAO.I.C.G.H.G.
60.299.856.8At4g21480828233carbohydrate transmembrane transporter/ sugar:hydrogen symporterF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAVO.I.C.G.H.G.
59.799.819.7At3g14520820677terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POO.I.C.G.H.G.
59.299.8147.9At3g20520821598SVL3 (SHV3-LIKE 3)F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOMO.I.C.G.H.G.
58.699.846.4At2g29370817486tropinone reductase, putative / tropine dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
58.299.8147.6At4g25830828688integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
58.099.833.2At5g01200831676myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMFO.I.C.G.H.G.
57.099.817.6At1g28170839711sulfotransferase family proteinF:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MOPBFO.I.C.G.H.G.
55.899.870.4At4g39210830076APL3Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL3 is the major large subunit isoform present in inflorescences, fruits and roots.O.I.C.G.H.G.
55.799.8124.0At5g62150836335peptidoglycan-binding LysM domain-containing proteinF:molecular_function unknown;P:cell wall macromolecule catabolic process;C:endomembrane system;PO.I.C.G.H.G.
53.299.853.6At5g01360830298-F:unknown;P:unknown;C:unknown;PMFO.I.C.G.H.G.
53.099.822.3At3g11180820289oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
52.299.8275.6At4g15750827253invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
51.699.835.3At4g32500829385AKT5member of Stelar K+ outward rectifying channel (SKOR) familyO.I.C.G.H.G.
50.999.8123.9At3g19550821491unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
50.099.854.6At4g37050829859PLP4 (PATATIN-LIKE PROTEIN 4)F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMFO.I.C.G.H.G.
49.999.868.9At2g21430816682cysteine proteinase A494, putative / thiol protease, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
49.699.870.2At1g27440839635GUT2F:glucuronoxylan glucuronosyltransferase activity, catalytic activity;P:secondary cell wall biogenesis, glucuronoxylan biosynthetic process;C:endomembrane system, membrane;PMOBFO.I.C.G.H.G.
48.599.821.6At5g55950835693transporter-relatedF:unknown;P:N-terminal protein myristoylation;C:membrane;PMFOBAO.I.C.G.H.G.
48.399.825.0At4g28500828968ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73)F:transcription factor activity, transcription activator activity;P:multicellular organismal development, regulation of secondary cell wall thickening;C:nucleus;POO.I.C.G.H.G.
46.199.850.5At3g15510820790ATNAC2 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2)Note of caution: not to be confused with another protein (AtNAC6 locus AT5G39610) which on occasion has also been referred to as AtNAC2.O.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage