Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-MEXP-265-raw-cel-414618093
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
101.599.9140.5At3g11480820321BSMT1The gene encodes a SABATH methyltransferase that methylates both salicylic acid and benzoic acid. It is highly expressed in flowers, induced by biotic and abiotic stress and thought to be involved in direct defense mechanism.O.I.C.G.H.G.
64.299.852.9At2g36590818232ProT3 (PROLINE TRANSPORTER 3)Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed in leaves, flowers and siliques but to a much lesser extent in roots.O.I.C.G.H.G.
61.599.815.9At3g53790824546TRFL4 (TRF-LIKE 4)Arabidopsis thaliana telomere-binding protein, putative (At3g53790)O.I.C.G.H.G.
58.699.826.2At3g47090823862leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:chloroplast;MPOBFVAO.I.C.G.H.G.
53.199.8165.2At1g17420838314LOX3LipoxygenaseO.I.C.G.H.G.
51.899.899.0At4g16590827360ATCSLA01encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
48.699.876.9At1g19640838551JMT (JASMONIC ACID CARBOXYL METHYLTRANSFERASE)Encodes a S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase that catalyzes the formation of methyljasmonate from jasmonic acid. Its expression is induced in response to wounding or methyljasmonate treatment.O.I.C.G.H.G.
48.499.8101.6At2g20340816553tyrosine decarboxylase, putativeF:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, tyrosine decarboxylase activity;P:amino acid metabolic process, response to wounding;C:cellular_component unknown;MBOFPAVO.I.C.G.H.G.
48.199.8187.7At4g15440827215HPL1 (HYDROPEROXIDE LYASE 1)Encodes a hydroperoxide lyase. Also a member of the CYP74B cytochrome p450 family. In the ecotype Columbia (Col) the gene contains a 10-nucleotide deletion in its first exon that causes it to code for a truncated protein that results in a non-functional hydroperoxide lyase.O.I.C.G.H.G.
45.499.8171.7At1g44350841026ILL6encodes a protein similar to IAA amino acid conjugate hydrolase.O.I.C.G.H.G.
33.599.725.4At1g52770841710phototropic-responsive NPH3 family proteinF:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;PO.I.C.G.H.G.
27.699.717.5At2g308308176342-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenaseO.I.C.G.H.G.
27.499.735.1At5g52320835308CYP96A4member of CYP96AO.I.C.G.H.G.
27.399.7148.3At3g51450824308strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAFO.I.C.G.H.G.
27.399.7136.0At4g01080827902unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
26.599.7152.2At1g20510838639OPCL1 (OPC-8:0 COA LIGASE1)F:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, jasmonic acid biosynthetic process, response to wounding;C:peroxisome;BOFMPAVO.I.C.G.H.G.
25.199.6191.6At4g2187082827626.5 kDa class P-related heat shock protein (HSP26.5-P)F:unknown;P:response to heat;C:cellular_component unknown;PBOFAO.I.C.G.H.G.
24.799.646.6At2g46510819262ATAIB (ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR)Encodes a nuclear localized BLH domain containing transcriptional activator involved in response to ABA. Overexpression confers enhanced ABA responsiveness while loss of function mutants are ABA sensitive.O.I.C.G.H.G.
24.399.614.3At5g17540831620transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups;P:biological_process unknown;C:cellular_component unknown;PFBOO.I.C.G.H.G.
22.299.630.1At4g15660827243glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOBO.I.C.G.H.G.
21.799.622.0At1g12880837845atnudt12 (Arabidopsis thaliana Nudix hydrolase homolog 12)F:hydrolase activity;P:biological_process unknown;C:unknown;BMPOFO.I.C.G.H.G.
20.999.6240.1At2g33380817901RD20 (RESPONSIVE TO DESSICATION 20)Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers.O.I.C.G.H.G.
19.699.639.8At1g74430843784MYB95 (myb domain protein 95)Encodes a putative transcription factor (MYB95).O.I.C.G.H.G.
19.299.610.5At1g61610842457S-locus lectin protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
18.999.5133.5At5g47240834771atnudt8 (Arabidopsis thaliana Nudix hydrolase homolog 8)F:hydrolase activity;P:response to wounding;C:cytosol;BOMPAFVO.I.C.G.H.G.
18.399.580.7At4g17230827435SCL13 (Scarecrow-like 13)Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family.O.I.C.G.H.G.
18.099.5234.4At1g19670838554ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1)Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation.O.I.C.G.H.G.
18.099.510.3At3g44560823581FAR8 (FATTY ACID REDUCTASE 8)F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:endomembrane system;MBOFPO.I.C.G.H.G.
17.799.512.1At4g23250828424EMB1290 (EMBRYO DEFECTIVE 1290)F:protein kinase activity, kinase activity;P:embryonic development ending in seed dormancy, protein amino acid autophosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
17.699.5173.7At2g29450817494ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5)Encodes a member of the TAU glutathione S-transferase gene family. Gene expression is induced by exposure to auxin, pathogen and herbicides. Naming convention according to Wagner et al. (2002)O.I.C.G.H.G.
17.599.599.9At4g37640829918ACA2 (CALCIUM ATPASE 2)Encodes a calmodulin-regulated Ca(2+)-pump located in the endoplasmic reticulum. Belongs to plant 2B ATPase's with an N-terminal autoinhibitor.O.I.C.G.H.G.
17.499.592.4At1g52720841705unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
17.399.5192.4At2g40100818599LHCB4.3 (light harvesting complex PSII)Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem IIO.I.C.G.H.G.
17.199.525.7At3g14440820667NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3)Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chloroplast stroma and thylakoid membrane.O.I.C.G.H.G.
17.199.513.6At5g38130833793transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:unknown;C:unknown;PFO.I.C.G.H.G.
17.199.58.5At3g03480821249CHAT (acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase)F:acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase activity;P:green leaf volatile biosynthetic process;C:cellular_component unknown;PFO.I.C.G.H.G.
16.999.590.5At1g52590841691-F:molecular_function unknown;P:biological_process unknown;C:plastoglobule;BOPO.I.C.G.H.G.
16.299.523.5At2g241603768109-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
15.999.542.4At1g19300838512PARVUS (PARVUS)The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening, and parvus mutants have thinner cell walls.O.I.C.G.H.G.
15.999.530.5At3g25180822110CYP82G1member of CYP82GO.I.C.G.H.G.
15.999.522.1At5g56860835788GNC (GATA, nitrate-inducible, carbon metabolism-involved)F:transcription factor activity;P:glucose mediated signaling, regulation of nitrogen compound metabolic process;C:nucleus;FPOMBO.I.C.G.H.G.
15.999.510.6At4g15200827184actin bindingF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:endomembrane system;MPBOFVAO.I.C.G.H.G.
15.599.5130.7At1g52890841722ANAC019 (Arabidopsis NAC domain containing protein 19)encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro.O.I.C.G.H.G.
15.499.552.3At2g32680817828AtRLP23 (Receptor Like Protein 23)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
15.199.4130.0At1g70700843407TIFY7JAZ9 is a protein presumed to be involved in jasmonate signaling. JAZ9 transcript levels rise in response to a jasmonate stimulus. JAZ9 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. The Jas domain appears to be important for JAZ9-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.O.I.C.G.H.G.
14.599.498.3At1g51760841602IAR3 (IAA-ALANINE RESISTANT 3)encodes a member of the six Arabidopsis IAA-amino acid conjugate hydrolase subfamily and conjugates and conjugates IAA-Ala in vitro. Gene is expressed most strongly in roots, stems, and flowers.O.I.C.G.H.G.
14.599.483.7At1g17380838310JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5)F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;PO.I.C.G.H.G.
14.299.4135.7At4g08870826458arginase, putativeEncodes one of the two arginase in the genome. Gene expression is enhanced by methyl jasmonate treatment.O.I.C.G.H.G.
14.299.428.6At3g55640824730mitochondrial substrate carrier family proteinF:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, plasma membrane;MFPOO.I.C.G.H.G.
14.099.418.3At5g64630836584FAS2 (FASCIATA 2)Chromatin Assembly Factor-1 (CAF-1) p60 subunit. Involved in organization of the shoot and root apical meristems. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis.O.I.C.G.H.G.
14.099.411.4At4g16740827377ATTPS03Monoterpene synthase, catalyzes the formation of the acyclic monoterpene (E)-beta-ocimene in response to wounding or treatment with jasmonic acid.O.I.C.G.H.G.
13.899.412.6At1g28010839694PGP14 (P-GLYCOPROTEIN 14)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:integral to membrane;BOMAFPVO.I.C.G.H.G.
13.799.437.1At3g11010820272AtRLP34 (Receptor Like Protein 34)F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAVO.I.C.G.H.G.
13.599.425.3At2g30540817603glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBOO.I.C.G.H.G.
13.499.415.7At2g46735819286unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.399.487.6At2g43020818904ATPAO2 (Polyamine oxidase 2)F:electron carrier activity, amine oxidase activity, oxidoreductase activity;P:unknown;C:cellular_component unknown;BMOPFAO.I.C.G.H.G.
13.399.435.9At2g47880819400glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBOO.I.C.G.H.G.
13.199.453.3At5g52570835334BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)Converts β-carotene to zeaxanthin via cryptoxanthin.O.I.C.G.H.G.
13.099.424.1At5g63450836464CYP94B1member of CYP94BO.I.C.G.H.G.
12.999.3137.6At4g24960828598ATHVA22DHomologous to a eukaryote specific ABA- and stress-inducible gene first isolated from barley. Groups in one subfamily with ATHVA22E. Along with other members of the ATHVA22 family, it may be involved in regulation of autophagy during development.O.I.C.G.H.G.
12.999.383.0At1g35710840475leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
12.999.351.9At1g31550840045GDSL-motif lipase, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuole;PBFOMO.I.C.G.H.G.
12.999.317.0At4g31770829305calcineurin-like phosphoesterase family proteinF:hydrolase activity, hydrolase activity, acting on ester bonds, protein serine/threonine phosphatase activity;P:mRNA processing;C:cellular_component unknown;MFOPBO.I.C.G.H.G.
12.999.314.8At5g381208337924-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinF:4-coumarate-CoA ligase activity;P:metabolic process;C:unknown;BOFMPAVO.I.C.G.H.G.
12.999.311.8At4g11900826797S-locus lectin protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;PMOFBVO.I.C.G.H.G.
12.899.38.9At4g21940828283CPK15member of Calcium Dependent Protein KinaseO.I.C.G.H.G.
12.799.323.0At1g25500839136choline transporter-relatedF:unknown;P:biological_process unknown;C:chloroplast;MFOPO.I.C.G.H.G.
12.599.379.0At5g13220831162JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)Plants overexpressing At5g13220.3, but not At5g13220.1 showed enhanced insensitivity to MeJa.O.I.C.G.H.G.
11.999.360.5At1g23090838917AST91 (SULFATE TRANSPORTER 91)Encodes AST91 mRNA for sulfate transporter.O.I.C.G.H.G.
11.999.335.3At5g55120835603VTC5 (VITAMIN C DEFECTIVE 5)Encodes a GDP-L-galactose phosphorylase, with similar biochemical properties as VTC2.O.I.C.G.H.G.
11.799.3203.2At5g19240832044unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
11.799.3136.5At1g61890842485MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
11.499.3182.4At2g24850817022TAT3 (TYROSINE AMINOTRANSFERASE 3)Encodes a tyrosine aminotransferase that is responsive to treatment with jasmonic acid.O.I.C.G.H.G.
11.499.337.5At2g33530817918scpl46 (serine carboxypeptidase-like 46)F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOBO.I.C.G.H.G.
11.399.318.9At5g66850836819MAPKKK5member of MEKK subfamilyO.I.C.G.H.G.
11.399.39.5At4g16920827400disease resistance protein (TIR-NBS-LRR class), putativeF:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVAO.I.C.G.H.G.
11.199.225.6At3g46670823820UGT76E11 (UDP-GLUCOSYL TRANSFERASE 76E11)F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
11.199.215.2At1g69720843308ho3 (HEME OXYGENASE 3)Encodes a member (HO3) of the heme oxygenase family.O.I.C.G.H.G.
10.999.292.4At3g06500819828beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putativeF:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:unknown;OPBO.I.C.G.H.G.
10.999.239.2At1g21790838783-F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MPOO.I.C.G.H.G.
10.999.221.8At1g49450841369transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFOBPAO.I.C.G.H.G.
10.899.299.1At4g31780829306MGD1 (MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 1)Encodes an A-type monogalactosyldiacylglycerol (MGDG) synthase. It represents the isoform responsible for the bulk of MGDG synthesis in Arabidopsis.O.I.C.G.H.G.
10.799.2125.2At1g74950843834TIFY10BF:molecular_function unknown;P:response to jasmonic acid stimulus, response to wounding;C:cellular_component unknown;PO.I.C.G.H.G.
10.699.284.3At2g35940818167BLH1 (BEL1-LIKE HOMEODOMAIN 1)Encodes a member of the BEL-like homeodomain protein family. Ecotopic expression in the embryo sac leads to defects in nuclear migration and cellularization and embryo sacs with multiple egg cells. Loss of function alleles have no female gametophyte defects. The ecotopic expression phenotype requires KNAT3 because it can be suppressed by loss of KNAT3 function alleles. Localized to the nucleus but interaction with OFP1 relocates it to the cytoplasm.O.I.C.G.H.G.
10.599.231.8At3g48720824033transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
10.599.29.8At1g03020839505glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
10.499.268.2At2g32160817775-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOPO.I.C.G.H.G.
10.399.255.0At2g28400817388unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
9.999.14.0At1g30100839889NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5)Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition.O.I.C.G.H.G.
9.799.144.7At2g34930818058disease resistance family proteinF:protein binding;P:signal transduction, defense response to fungus, defense response;C:cell wall;PMOBFAVO.I.C.G.H.G.
9.799.120.0At4g35550829707WOX13 (WUSCHEL-RELATED HOMEOBOX 13)Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. WOX13 is the only family member that does not contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.O.I.C.G.H.G.
9.699.154.9At3g53780824545rhomboid family proteinF:unknown;P:unknown;C:plasma membrane;BOMPAFO.I.C.G.H.G.
9.699.130.4At1g76130843945AMY2 (ALPHA-AMYLASE-LIKE 2)alpha-amylase, putative / 1,4-alpha-D-glucan glucanohydrolase, putative, strong similarity to alpha-amylase GI:7532799 from (Malus x domestica);contains Pfam profile PF00128: Alpha amylase, catalytic domain. Predicted to be secreted based on SignalP analysis.O.I.C.G.H.G.
9.399.136.3At5g46760834719basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POMFBVO.I.C.G.H.G.
9.299.148.1At3g09830820141protein kinase, putativeF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
9.099.174.4At5g49630835025AAP6 (AMINO ACID PERMEASE 6)Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem.O.I.C.G.H.G.
9.099.19.2At4g13410826972ATCSLA15encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
8.999.067.7At1g66940843012protein kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO.I.C.G.H.G.
8.999.034.0At4g24460828548unknown proteinF:unknown;P:unknown;C:chloroplast;OPBMO.I.C.G.H.G.
8.999.024.8At3g63110825486ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3)Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast.O.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage