Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-MEXP-265-raw-cel-414617890
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
303.0100.069.3At5g59305836049unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
268.9100.0123.2At5g05390830421LAC12 (laccase 12)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).O.I.C.G.H.G.
205.8100.044.8At2g31930817751unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
175.7100.0307.9At1g67750843100pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFOO.I.C.G.H.G.
153.899.945.9At2g35150818081EXL1 (EXORDIUM LIKE 1)F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO.I.C.G.H.G.
143.599.935.7At1g09610837488unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBO.I.C.G.H.G.
139.699.9189.4At5g17420831608IRX3 (IRREGULAR XYLEM 3)Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181).O.I.C.G.H.G.
138.899.9214.1At1g72230843555plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBO.I.C.G.H.G.
123.299.931.2At4g18630827597unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMOFO.I.C.G.H.G.
123.099.941.6At2g40130818604heat shock protein-relatedF:unknown;P:biological_process unknown;C:unknown;PBO.I.C.G.H.G.
122.999.9127.0At5g15630831417IRX6Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars.O.I.C.G.H.G.
122.099.9252.9At5g03170831914FLA11F:unknown;P:unknown;C:anchored to membrane;PBOMAFO.I.C.G.H.G.
121.199.9113.1At5g67210836856unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.C.G.H.G.
120.299.9227.1At5g44030834426CESA4 (CELLULOSE SYNTHASE A4)Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.O.I.C.G.H.G.
116.599.964.6At3g50220824184unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.C.G.H.G.
111.899.9295.1At3g54260824593unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PMO.I.C.G.H.G.
111.499.964.3At2g40120818603protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytoplasm;MOPFBVAO.I.C.G.H.G.
111.499.941.2At1g32770840171ANAC012 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 12)Encodes SND1, a NAC Domain transcription factor involved in secondary wall biosynthesis in fibers. Expressed specifically in interfascicular fibers and xylary fibers in stems. Expressed in the procambium of stem inflorescences and root. May act as a negative regulator of secondary wall thickening in xylary fibers. Acts redundantly with NST1 to control development of secondary walls in siliques.O.I.C.G.H.G.
109.399.9122.1At5g54690835558GAUT12 (GALACTURONOSYLTRANSFERASE 12)Encodes a protein with putative galacturonosyltransferase activity. Mutants defective in this gene displayed a notable reduction in xylose (>50%) in the cell walls from stems and roots and a reduction in cellulose (~25%).O.I.C.G.H.G.
107.599.9176.0At1g03820839400unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OPFMBO.I.C.G.H.G.
104.299.932.1At3g25130822104unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;OMFBPVAO.I.C.G.H.G.
99.199.926.6At5g01190831697LAC10 (laccase 10)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).O.I.C.G.H.G.
98.299.9205.3At3g16920820947chitinaseF:chitinase activity;P:cell wall macromolecule catabolic process;C:unknown;PBMOFO.I.C.G.H.G.
97.999.941.9At1g16530838223ASL9 (ASYMMETRIC LEAVES 2 LIKE 9)F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
92.999.9241.0At4g28250828940ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
92.699.9137.8At4g27435828852unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
88.799.944.1At5g48800834938phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;PO.I.C.G.H.G.
85.799.9206.4At2g38080818386IRX12 (IRREGULAR XYLEM 12)Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype.O.I.C.G.H.G.
85.499.939.1At1g79180844259MYB63 (MYB DOMAIN PROTEIN 63)Member of the R2R3 factor gene family.O.I.C.G.H.G.
84.899.937.4At5g03680831757PTL (PETAL LOSS)Recessive mutations are defective in organ initiation and orientation in the second whorl. This gene encodes a trihelix transcription factor whose expression is limited to margins of floral and vegetative organs. Overexpression and double mutant analyses suggest that this gene is involved in limiting lateral growth of organs.O.I.C.G.H.G.
84.099.985.7At2g37090818285IRX9 (IRREGULAR XYLEM 9)The IRX9 gene encodes a putative family 43 glycosyl transferase. It was coordinately expressed with the cellulose synthase subunits during secondary cell wall formation. Cell wall analysis revealed a decrease in the abundance of xylan in the irx9 mutant, indicating that IRX9 is required for xylan synthesis. Mutants have irregular xylem phenotype suggesting a role in secondary cell wall biosynthesis.O.I.C.G.H.G.
82.199.922.7At1g30515839931unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
80.499.9117.2At3g62020825375GLP10 (GERMIN-LIKE PROTEIN 10)germin-like protein (GLP10)O.I.C.G.H.G.
80.099.9257.9At3g45160823652unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
79.099.956.8At3g45070823642sulfotransferase family proteinF:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MOPBFO.I.C.G.H.G.
78.899.930.5At3g62930825468glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
77.099.987.5At1g27440839635GUT2F:glucuronoxylan glucuronosyltransferase activity, catalytic activity;P:secondary cell wall biogenesis, glucuronoxylan biosynthetic process;C:endomembrane system, membrane;PMOBFO.I.C.G.H.G.
76.699.9247.4At2g42610818861LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
75.699.940.7At3g63440825519CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6)This gene used to be called AtCKX7. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.O.I.C.G.H.G.
74.799.9364.9At1g04680839452pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:membrane;PBFOO.I.C.G.H.G.
74.499.968.4At2g34410818004O-acetyltransferase family proteinF:O-acetyltransferase activity;P:biological_process unknown;C:endomembrane system;MPFOO.I.C.G.H.G.
72.199.944.9At2g41610818759unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
71.099.951.2At3g15050820734IQD10 (IQ-domain 10)F:calmodulin binding;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
70.699.966.0At1g08340837354rac GTPase activating protein, putativeF:Rac GTPase activator activity;P:signal transduction;C:intracellular;MOFPVBAO.I.C.G.H.G.
70.299.979.0At1g73640843698AtRABA6a (Arabidopsis Rab GTPase homolog A6a)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVAO.I.C.G.H.G.
69.899.947.1At4g22160828305unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
68.299.9131.4At5g44400834466FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BFOPAMO.I.C.G.H.G.
67.999.932.6At1g09440837467protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
67.399.8159.6At5g60490836170FLA12F:unknown;P:unknown;C:plasma membrane, anchored to membrane;PBOMAFO.I.C.G.H.G.
65.799.837.7At1g03620839448phagocytosis and cell motility protein ELMO1-relatedF:molecular_function unknown;P:phagocytosis;C:cytoskeleton;MPOFO.I.C.G.H.G.
65.699.820.9At1g07120837222-F:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;POMFBO.I.C.G.H.G.
64.899.830.8At3g30340822735nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;OBPAMO.I.C.G.H.G.
64.099.8287.7At5g42180834223peroxidase 64 (PER64) (P64) (PRXR4)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBMO.I.C.G.H.G.
63.099.8236.6At4g29080829029PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)phytochrome-associated protein 2 (PAP2)O.I.C.G.H.G.
62.799.813.1At5g46115834653unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
62.699.835.1At1g79620844301leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
61.899.883.8At1g10480837588ZFP5 (ZINC FINGER PROTEIN 5)Encodes a zinc finger protein containing only a single zinc finger.O.I.C.G.H.G.
60.099.8411.1At4g24780828580pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:membrane;PBFOO.I.C.G.H.G.
60.099.825.6At1g31490840039transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, quinone binding, amine oxidase activity, copper ion binding, transferase activity;P:cellular amine metabolic process;C:chloroplast;PFO.I.C.G.H.G.
58.299.819.4At3g62740825449BGLU7 (BETA GLUCOSIDASE 7)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAO.I.C.G.H.G.
57.999.827.4At4g28500828968ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73)F:transcription factor activity, transcription activator activity;P:multicellular organismal development, regulation of secondary cell wall thickening;C:nucleus;POO.I.C.G.H.G.
56.899.8139.3At5g39110833904germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOO.I.C.G.H.G.
56.599.829.9At4g39320830087microtubule-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBPO.I.C.G.H.G.
55.799.8165.1At3g10340820196PAL4 (Phenylalanine ammonia-lyase 4)F:ammonia-lyase activity, ammonia ligase activity, catalytic activity;P:L-phenylalanine catabolic process, biosynthetic process;C:cytoplasm;BPOFMAO.I.C.G.H.G.
53.699.841.8At5g26670832722pectinacetylesterase, putativeF:carboxylesterase activity;P:unknown;C:endomembrane system;PMOBO.I.C.G.H.G.
53.699.823.6At2g45900819198unknown proteinF:molecular_function unknown;P:response to gibberellin stimulus;C:cellular_component unknown;POMFBO.I.C.G.H.G.
53.399.8110.7At4g18780827612IRX1 (IRREGULAR XYLEM 1)Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.O.I.C.G.H.G.
53.299.8143.3At1g78490844185CYP708A3member of CYP708AO.I.C.G.H.G.
50.099.839.5At3g42950823351glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.C.G.H.G.
49.999.875.1At1g19300838512PARVUS (PARVUS)The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening, and parvus mutants have thinner cell walls.O.I.C.G.H.G.
49.899.8187.7At1g70710843408ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1)endo-1,4-beta-glucanase. Involved in cell elongation.O.I.C.G.H.G.
48.699.89.6At1g65890842901AAE12 (ACYL ACTIVATING ENZYME 12)F:catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
48.599.871.9At1g05710837078ethylene-responsive protein, putativeF:transcription factor activity;P:response to ethylene stimulus, regulation of transcription;C:nucleus;PO.I.C.G.H.G.
48.599.851.5At3g19370821471-F:unknown;P:unknown;C:plasma membrane;MOBFPAVO.I.C.G.H.G.
47.899.885.4At1g60590842353polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVAO.I.C.G.H.G.
47.199.859.8At5g24310832498ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVO.I.C.G.H.G.
46.899.830.7At2g28870817436unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
46.599.8184.4At2g01610814690invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
45.099.843.5At2g40480818643unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPBFVO.I.C.G.H.G.
44.799.896.4At3g23290821908--O.I.C.G.H.G.
44.699.899.0At2g28760817426NAD-dependent epimerase/dehydratase family proteinF:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, nucleotide-sugar metabolic process, metabolic process;C:plasma membrane;OBPMAFVO.I.C.G.H.G.
44.399.8300.0At5g48485834904DIR1 (DEFECTIVE IN INDUCED RESISTANCE 1)encodes a putative apoplastic lipid transfer protein that is involved in systemic acquired resistance. Mutants in this gene exhibit wild-type local resistance to avirulent and virulent Pseudomonas syringae, but pathogenesis-related gene expression is abolished in uninoculated distant leaves and fail to develop SAR to virulent Pseudomonas or Peronospora parasitica.O.I.C.G.H.G.
43.899.828.8At1g23380838946KNAT6homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants.O.I.C.G.H.G.
43.199.847.9At1g30840839967ATPUP4Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.O.I.C.G.H.G.
43.199.810.6At1g05370837038-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPMOO.I.C.G.H.G.
42.999.8104.8At1g22480838854plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PFOO.I.C.G.H.G.
42.799.846.3At3g23295--O.I.C.G.H.G.
41.699.8136.6At2g03090814838ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
40.899.810.9At2g46770819290EMB2301 (EMBRYO DEFECTIVE 2301)NAC transcription factor NST1. NST1 and NST2 are redundant in regulating secondary wall thickening in anther walls and siliques. NST1 promoter was detected in various tissues in which lignified secondary walls develop.O.I.C.G.H.G.
40.799.871.1At1g60390842334BURP domain-containing protein / polygalacturonase, putativeF:polygalacturonase activity;P:biological_process unknown;C:endomembrane system;OMBPFVAO.I.C.G.H.G.
40.699.838.0At1g78815844218LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7)F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMO.I.C.G.H.G.
40.499.822.9At1g68200843149zinc finger (CCCH-type) family proteinF:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;MOPFO.I.C.G.H.G.
40.399.8392.3At1g75280843865isoflavone reductase, putativeisoflavone reductase, putative, identical to SP:P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile PF02716: isoflavone reductase. Involved in response to oxidative stress.O.I.C.G.H.G.
38.599.8299.8At5g05960830481protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
38.599.839.7At4g15660827243glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOBO.I.C.G.H.G.
37.599.780.8At3g02885821194GASA5 (GAST1 PROTEIN HOMOLOG 5)F:unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.C.G.H.G.
37.299.784.2At1g10640837607polygalacturonaseF:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMAO.I.C.G.H.G.
37.199.725.8At4g23720828472unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
36.899.727.4At5g16600831522MYB43 (myb domain protein 43)Encodes a putative transcription factor (MYB43).O.I.C.G.H.G.
36.599.7262.7At2g39700818553ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)putative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.



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