Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-MEXP-1799-raw-cel-1665601214
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
152.099.9105.2At1g16400838210CYP79F2Encodes cytochrome P450 CYP79F2.O.I.C.G.H.G.
123.199.9120.8At3g03190821227ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11)Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
111.899.976.6At5g07690830662ATMYB29 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 29)Encodes a putative transcription factor (MYB29).O.I.C.G.H.G.
97.699.9214.3At4g12030826811bile acid:sodium symporter family proteinF:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport;C:membrane;OBMPAO.I.C.G.H.G.
83.899.983.9At1g65860842897FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1)belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolatesO.I.C.G.H.G.
66.199.817.6At4g08800826451protein kinase, putativeF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MOPBFVAO.I.C.G.H.G.
65.399.891.8At3g22740821845HMT3homocysteine S-methyltransferase (HMT3)O.I.C.G.H.G.
64.799.8295.9At4g03060828102AOP2 (ALKENYL HYDROXALKYL PRODUCING 2)Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis.O.I.C.G.H.G.
57.199.8237.2At3g58990825068aconitase C-terminal domain-containing proteinF:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOFAPMO.I.C.G.H.G.
54.499.830.1At5g61290836250flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
49.899.825.8At2g45080819115cycp3F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:cellular_component unknown;FOMPBO.I.C.G.H.G.
42.899.8187.3At2g43100818912aconitase C-terminal domain-containing proteinF:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOAFPMO.I.C.G.H.G.
41.899.8137.3At1g18590838440SOT17 (SULFOTRANSFERASE 17)encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates.O.I.C.G.H.G.
39.299.8242.3At1g21440838742mutase family proteinF:isocitrate lyase activity, catalytic activity;P:metabolic process;C:chloroplast, chloroplast stroma;OBFPAMO.I.C.G.H.G.
32.399.751.0At4g29200829041beta-galactosidaseF:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;PO.I.C.G.H.G.
30.399.782.6At1g62560842553FMO GS-OX3 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 3)belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolatesO.I.C.G.H.G.
28.099.725.9At4g04750825811carbohydrate transmembrane transporter/ sugar:hydrogen symporterF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOAO.I.C.G.H.G.
24.699.635.1At5g67150836850transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
23.299.6199.0At4g39940830153AKN2 (APS-kinase 2)adenosine-5'-phosphosulfate-kinase (akn2) mRNA, completeO.I.C.G.H.G.
23.199.645.6At5g58390835952peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.C.G.H.G.
22.799.676.4At1g72810843612threonine synthase, putativeF:pyridoxal phosphate binding, catalytic activity, threonine synthase activity;P:amino acid metabolic process, threonine biosynthetic process, metabolic process;C:chloroplast;BOAMPFO.I.C.G.H.G.
21.299.6113.3At2g31790817736UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
21.099.628.4At3g21950821753methyltransferaseF:methyltransferase activity;P:response to cadmium ion;C:cellular_component unknown;POBMFO.I.C.G.H.G.
20.799.610.9At5g52170835293HDG7 (HOMEODOMAIN GLABROUS 7)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.O.I.C.G.H.G.
20.499.6136.7At5g07460830637PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)ubiquitous enzyme that repairs oxidatively damaged proteins. Methionine sulfoxide reductase activity. Mutant lacking reductase activity showed increased protein oxidation, nitration and glycation of specific amino acid residues during darkness.O.I.C.G.H.G.
20.499.672.9At3g24770822075CLE41 (CLAVATA3/ESR-RELATED 41)Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The C-terminal 12 amino acid sequence of CLE41 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation. TDIF sequence is also identical to the C-terminal 12 amino acids of CLE44 (At4g13195).O.I.C.G.H.G.
20.299.6211.7At3g49680824130BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.O.I.C.G.H.G.
19.999.614.3At2g03130814842ribosomal protein L12 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMFO.I.C.G.H.G.
19.599.666.1At1g24120839024ARL1 (ARG1-LIKE 1)encodes a DnaJ-like protein similar to ARG1 and ARL2 that are both involved in root and hypocotyl gravitropism response. However, null mutation in this gene does not result in defects in gravitropism. Gene is expressed in all tissues examined.O.I.C.G.H.G.
19.599.631.7At1g16060838176ovule development protein, putativeF:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBVO.I.C.G.H.G.
19.199.6365.8At3g19710821508BCAT4 (BRANCHED-CHAIN AMINOTRANSFERASE4)Belongs to the branched-chain amino acid aminotransferase gene family. Encodes a methionine-oxo-acid transaminase. Involved in the methionine chain elongation pathway that leads to the ultimate biosynthesis of methionine-derived glucosinolates.O.I.C.G.H.G.
19.099.5228.4At4g22490828344protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
18.899.582.9At5g59440836063ZEU1 (ZEUS1)Encodes thymidylate kinase which exists in two isoforms in plants. The longer variant of 263 amino acids with a N-terminal extension that is required for localization to the mitochondrion. The second isoform of 224 residues is localized to the cytoplasm and nucleoplasm. Peak of expression occurs during G1/S phase transition.O.I.C.G.H.G.
18.799.5147.1At2g20610816585SUR1 (SUPERROOT 1)Confers auxin overproduction. Mutants have an over-proliferation of lateral roots. Encodes a C-S lyase involved in converting S-alkylthiohydroximate to thiohydroximate in glucosinolate biosynthesis.O.I.C.G.H.G.
17.799.570.5At1g31230840011AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I)Encodes a bifunctional aspartate kinase/homoserine dehydrogenase. These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine.O.I.C.G.H.G.
17.599.5168.9At5g14800831332P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE)Delta 1-pyrroline-5-carboxylate reductase, catalyzes the final step in proline biosynthesis from glutamate and ornithine.In situ hybridization indicated that under normal growth conditions, the highest concentration of P5CR transcripts occurs in the cortical parenchyma, phloem, vascular cambium and pith parenchyma in the vicinity of the protoxylem. Single gene in Arabidopsis.O.I.C.G.H.G.
17.199.5117.3At3g23570821936dienelactone hydrolase family proteinF:hydrolase activity;P:response to salt stress;C:cellular_component unknown;BFPOMAO.I.C.G.H.G.
17.199.588.3At5g10180830882AST68Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation.O.I.C.G.H.G.
17.099.5371.7At1g78370844173ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
16.599.550.7At1g59740842267proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport, response to nematode;C:plasma membrane, membrane;BPMOFO.I.C.G.H.G.
15.899.528.7At4g28950829016ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9)A member of ROP GTPase gene family.O.I.C.G.H.G.
15.399.4146.7At2g14750815963APK (APS KINASE)Encodes a functional APS kinaseO.I.C.G.H.G.
15.199.417.8At1g62540842551FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2)belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolatesO.I.C.G.H.G.
15.199.415.8At1g33440840237proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOFO.I.C.G.H.G.
15.199.412.0At2g31725817729unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.C.G.H.G.
15.099.417.6At2g18190816332AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:response to salt stress;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
14.899.4293.0At4g13770827011CYP83A1 (CYTOCHROME P450 83A1)Encodes a cytochrome p450 enzyme that catalyzes the initial conversion of aldoximes to thiohydroximates in the synthesis of glucosinolates not derived from tryptophan. Also has a role in auxin homeostasis.O.I.C.G.H.G.
14.499.449.4At3g61620825335RRP41exonuclease RRP41 (RRP41)O.I.C.G.H.G.
14.499.411.5At3g63330825508protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVAO.I.C.G.H.G.
14.499.410.7At3g27650822387LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25)F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.399.411.5At5g26790832737unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.899.4160.0At1g74090843749SOT18 (DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18)encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates.O.I.C.G.H.G.
13.899.4158.6At1g311808400063-isopropylmalate dehydrogenase, chloroplast, putativeThe AtIMD3 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids.O.I.C.G.H.G.
13.899.472.9At1g78490844185CYP708A3member of CYP708AO.I.C.G.H.G.
13.799.464.6At5g61420836263MYB28 (myb domain protein 28)Encodes a nuclear localized member of the MYB transcription factor family. Involved in positive regulation of aliphatic glucosinolate biosynthesis.Expression is induced by touch, wounding and glucose.O.I.C.G.H.G.
13.699.453.4At1g034953766646transferase/ transferase, transferring acyl groups other than amino-acyl groupsF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PFO.I.C.G.H.G.
13.599.438.6At3g19590821496WD-40 repeat family protein / mitotic checkpoint protein, putativeF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPAO.I.C.G.H.G.
13.199.4180.3At4g30140829137GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
12.999.380.7At5g17220831586ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12)Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems.O.I.C.G.H.G.
12.999.317.3At3g07860819977unknown proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;MPOO.I.C.G.H.G.
12.799.3126.5At3g02020821287AK3 (ASPARTATE KINASE 3)encodes a monofunctional aspartate kinaseO.I.C.G.H.G.
12.799.325.2At3g23295--O.I.C.G.H.G.
12.699.332.0At4g09510826535beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putativeF:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:cellular_component unknown;OPBO.I.C.G.H.G.
12.599.39.3At3g12890820472ASML2 (ACTIVATOR OF SPOMIN::LUC2)Encodes a protein belonging to a class of CCT (CONSTANS, CONSTANS-like, TOC1) domain proteins. The protein contains a 43 amino acid-long sequence with high homology to the CCT domain but does not have any B-box or GATA-type zinc finger domains. Functions as a transcriptional activator and regulates the expression of at least a subset of sugar-inducible genes.O.I.C.G.H.G.
12.599.36.6At1g26530839193unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
12.399.342.9At2g19670816486PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A)F:protein-arginine N-methyltransferase activity;P:unknown;C:unknown;MBOPFAO.I.C.G.H.G.
12.399.328.1At3g462108237663' exoribonuclease family domain 1-containing proteinF:3'-5'-exoribonuclease activity, RNA binding;P:RNA processing;C:cellular_component unknown;BOMAFPO.I.C.G.H.G.
12.299.366.1At2g23000816831scpl10 (serine carboxypeptidase-like 10)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
12.299.333.1At1g17560838332HLL (HUELLENLOS)Mutant shows abnormal ovule developmentO.I.C.G.H.G.
12.199.321.5At3g10870820257MES17 (METHYL ESTERASE 17)Encodes a methyl IAA esterase. Methyl IAA is believed to be an inactive form of auxin that needs to be demethylated to exert a biological effect. MES17 does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro. This gene is expressed in several tissues of seedlings and adult plants, with a higher relative level of expression in the seedling shoot apex and the adult stem.O.I.C.G.H.G.
12.099.381.1At1g09815837513POLD4 (POLYMERASE DELTA 4)F:DNA-directed DNA polymerase activity;P:DNA replication;C:nucleus;FMPOO.I.C.G.H.G.
12.099.375.5At5g15610831413proteasome family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
12.099.355.2At4g14090827046UDP-glucoronosyl/UDP-glucosyl transferase family proteinThe At4g14090 encodes a anthocyanidin 5-O-glucosyltransferase specifically glucosylating the 5-position of the flavonoid A-ring.O.I.C.G.H.G.
12.099.336.1At2g37400818316chloroplast lumen common family proteinF:binding;P:biological_process unknown;C:mitochondrion, chloroplast thylakoid lumen, plastid, chloroplast envelope;BOAMPFO.I.C.G.H.G.
11.699.382.1At3g05060819668SAR DNA-binding protein, putativeSAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like proteinO.I.C.G.H.G.
11.699.316.2At1g16070838177AtTLP8 (TUBBY LIKE PROTEIN 8)Member of TLP familyO.I.C.G.H.G.
11.399.3123.0At3g57050824872CBL (cystathionine beta-lyase)Encodes second enzyme in the methionine biosynthetic pathwayO.I.C.G.H.G.
11.399.325.2At4g37490829904CYCB1Cyclin-dependent protein kinase CYCB1;1. Functions as an effector of growth control at G2/M. Regulated by TCP20.O.I.C.G.H.G.
11.399.323.9At5g19260832046unknown proteinF:unknown;P:unknown;C:unknown;MOFPBVO.I.C.G.H.G.
11.199.241.4At2g29540817503ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT)RNA polymerase I(A) and III(C) 14 kDa subunitO.I.C.G.H.G.
11.199.212.9At4g20350827783unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MFOPBVO.I.C.G.H.G.
11.099.2101.2At1g73490843684RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
11.099.290.0At5g44720834501molybdenum cofactor sulfurase family proteinF:molybdenum ion binding, Mo-molybdopterin cofactor sulfurase activity, pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:cellular_component unknown;BMFOPAO.I.C.G.H.G.
11.099.238.5At3g60520825223unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.999.2111.2At2g46650819277CB5-C (CYTOCHROME B5 ISOFORM C)member of Cytochromes b5O.I.C.G.H.G.
10.999.227.5At4g15790827259unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;OMBPFAO.I.C.G.H.G.
10.899.226.8At2g46610819273arginine/serine-rich splicing factor, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBVAO.I.C.G.H.G.
10.799.261.9At4g14680827118APS3ATP sulfurylaseO.I.C.G.H.G.
10.799.243.0At4g30620829185unknown proteinF:unknown;P:biological_process unknown;C:chloroplast, chloroplast envelope;BOPO.I.C.G.H.G.
10.799.234.6At5g42670834276agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:unknown;PMOO.I.C.G.H.G.
10.699.238.9At5g62980836418dihydroneopterin aldolase, putativeF:dihydroneopterin aldolase activity;P:folic acid and derivative metabolic process;C:cellular_component unknown;BOPAO.I.C.G.H.G.
10.699.237.3At3g61630825336CRF6 (CYTOKININ RESPONSE FACTOR 6)CRF6 encodes one of the six cytokinin response factors. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves.O.I.C.G.H.G.
10.699.227.4At1g60850842377ATRPAC42F:DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding;P:transcription;C:nucleolus;OMFAPO.I.C.G.H.G.
10.499.217.9At1g74890843828ARR15 (RESPONSE REGULATOR 15)Encodes a nuclear response regulator that acts as a negative regulator in cytokinin-mediated signal transduction. Transcript accumulates in leaves and roots in response to cytokinin treatment.O.I.C.G.H.G.
10.199.2170.6At1g14810838046semialdehyde dehydrogenase family proteinencodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesisO.I.C.G.H.G.
10.199.296.5At4g24830828586arginosuccinate synthase familyF:argininosuccinate synthase activity, ATP binding;P:arginine biosynthetic process;C:chloroplast stroma, chloroplast;OBMAFPO.I.C.G.H.G.
10.199.267.4At2g03090814838ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
10.199.218.8At5g19380832058unknown proteinF:unknown;P:unknown;C:chloroplast;OPBMAO.I.C.G.H.G.
10.099.269.1At5g3985083398140S ribosomal protein S9 (RPS9C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, membrane;POBMFAO.I.C.G.H.G.
10.099.215.3At4g22280828323F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.



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