CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-1799-raw-cel-1665601126

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
66.7 99.8 33.3 At5g61290 836250 flavin-containing monooxygenase family protein / FMO family protein F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
51.9 99.8 78.5 At3g03190 821227 ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
26.0 99.7 54.9 At3g17680 821035 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF O.I. C.G. H.G.
25.7 99.7 110.0 At4g12030 826811 bile acid:sodium symporter family protein F:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport;C:membrane;OBMPA O.I. C.G. H.G.
25.1 99.6 42.8 At1g16400 838210 CYP79F2 Encodes cytochrome P450 CYP79F2. O.I. C.G. H.G.
24.3 99.6 245.4 At4g30140 829137 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
22.5 99.6 248.1 At4g22490 828344 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
22.4 99.6 23.1 At4g04750 825811 carbohydrate transmembrane transporter/ sugar:hydrogen symporter F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA O.I. C.G. H.G.
22.3 99.6 34.2 At5g07690 830662 ATMYB29 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 29) Encodes a putative transcription factor (MYB29). O.I. C.G. H.G.
22.3 99.6 21.5 At3g06433 3768778 - pseudogene of nodulin MtN3 family protein O.I. C.G. H.G.
21.5 99.6 145.4 At3g58990 825068 aconitase C-terminal domain-containing protein F:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOFAPM O.I. C.G. H.G.
20.1 99.6 26.1 At5g51600 835234 PLE (PLEIADE) Mutant has defective roots. Essential for giant cell ontogenesis. Role in organizing the mitotic microtubule array during both early and late mitosis in all plant organs. O.I. C.G. H.G.
19.1 99.6 67.8 At5g10140 830878 FLC (FLOWERING LOCUS C) MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3� to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex. O.I. C.G. H.G.
19.1 99.6 17.8 At1g33440 840237 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOF O.I. C.G. H.G.
18.8 99.5 34.6 At5g04360 830315 ATLDA (LIMIT DEXTRINASE) Encodes an enzyme thought to be involved in the hydrolysis of the α-1,6 linkages during starch degradation in seed endosperm. However, a knockout mutant of Arabidopsis lacking limit dextrinase has normal rates of starch degradation in the leaf at night, indicating that more than one isoamylases might be involved in this process. O.I. C.G. H.G.
17.1 99.5 43.4 At3g19590 821496 WD-40 repeat family protein / mitotic checkpoint protein, putative F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPA O.I. C.G. H.G.
16.3 99.5 52.1 At1g31710 840058 copper amine oxidase, putative F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA O.I. C.G. H.G.
16.2 99.5 36.9 At1g65860 842897 FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1) belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates O.I. C.G. H.G.
14.9 99.4 110.3 At2g43100 818912 aconitase C-terminal domain-containing protein F:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOAFPM O.I. C.G. H.G.
14.4 99.4 24.8 At5g48470 834902 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
13.9 99.4 38.5 At5g25090 832580 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;P O.I. C.G. H.G.
13.8 99.4 30.9 At4g15790 827259 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;OMBPFA O.I. C.G. H.G.
13.7 99.4 33.6 At5g48960 834954 5' nucleotidase family protein F:5'-nucleotidase activity;P:biological_process unknown;C:chloroplast, chloroplast stroma;MPBO O.I. C.G. H.G.
13.7 99.4 13.5 At2g45080 819115 cycp3 F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:cellular_component unknown;FOMPB O.I. C.G. H.G.
13.3 99.4 16.0 At1g34245 840324 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
13.2 99.4 49.3 At2g34490 818012 CYP710A2 (cytochrome P450, family 710, subfamily A, polypeptide 2) Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze the conversion of both 24-epi-campesterol and β-sitosterol to brassicasterol and stigmasterol, respectively, in the presence of NADPH. O.I. C.G. H.G.
13.0 99.4 59.7 At2g39330 818518 JAL23 (JACALIN-RELATED LECTIN 23) F:molecular_function unknown;P:biological_process unknown;C:vacuole;POF O.I. C.G. H.G.
12.9 99.3 44.8 At1g59740 842267 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport, response to nematode;C:plasma membrane, membrane;BPMOF O.I. C.G. H.G.
12.9 99.3 19.7 At4g24175 828518 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOP O.I. C.G. H.G.
12.7 99.3 67.6 At2g23000 816831 scpl10 (serine carboxypeptidase-like 10) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
12.3 99.3 128.8 At4g03060 828102 AOP2 (ALKENYL HYDROXALKYL PRODUCING 2) Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis. O.I. C.G. H.G.
12.3 99.3 27.5 At3g52110 824374 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB O.I. C.G. H.G.
11.7 99.3 7.7 At4g28430 828960 reticulon family protein F:unknown;P:biological_process unknown;C:endoplasmic reticulum, chloroplast;MPOF O.I. C.G. H.G.
11.6 99.3 21.1 At3g21950 821753 methyltransferase F:methyltransferase activity;P:response to cadmium ion;C:cellular_component unknown;POBMF O.I. C.G. H.G.
11.6 99.3 12.6 At3g20150 821558 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOFPBAV O.I. C.G. H.G.
11.5 99.3 50.9 At1g62560 842553 FMO GS-OX3 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 3) belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates O.I. C.G. H.G.
11.5 99.3 32.2 At5g58390 835952 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
11.4 99.3 18.1 At3g21300 821684 RNA methyltransferase family protein F:methyltransferase activity, RNA binding, RNA methyltransferase activity;P:RNA processing;C:unknown;BOMFAPV O.I. C.G. H.G.
11.3 99.3 38.1 At3g22740 821845 HMT3 homocysteine S-methyltransferase (HMT3) O.I. C.G. H.G.
11.0 99.2 46.4 At4g34160 829564 CYCD3 encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1. O.I. C.G. H.G.
11.0 99.2 28.3 At3g02120 821311 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:response to cyclopentenone;C:cellular_component unknown;P O.I. C.G. H.G.
10.8 99.2 34.4 At3g22880 821860 DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) Expression of the AtDMC1 is restricted to pollen mother cells in anthers and to megaspore mother cells in ovules. Similar to meiosis-specific yeast DMC gene. O.I. C.G. H.G.
10.8 99.2 9.2 At3g27650 822387 LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25) F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.7 99.2 20.2 At3g10870 820257 MES17 (METHYL ESTERASE 17) Encodes a methyl IAA esterase. Methyl IAA is believed to be an inactive form of auxin that needs to be demethylated to exert a biological effect. MES17 does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro. This gene is expressed in several tissues of seedlings and adult plants, with a higher relative level of expression in the seedling shoot apex and the adult stem. O.I. C.G. H.G.
10.7 99.2 16.7 At1g10780 837621 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
10.6 99.2 31.1 At5g13840 831230 FZR3 (FIZZY-RELATED 3) F:signal transducer activity;P:signal transduction;C:chloroplast, heterotrimeric G-protein complex;MFBOPA O.I. C.G. H.G.
10.5 99.2 18.1 At5g45700 834609 NLI interacting factor (NIF) family protein F:phosphatase activity;P:unknown;C:unknown;MOFPVB O.I. C.G. H.G.
10.4 99.2 8.2 At5g55820 835676 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
10.3 99.2 68.0 At1g10522 837593 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
10.3 99.2 22.2 At5g57590 835863 BIO1 (biotin auxotroph 1) Mutant complemented by E coli Bio A gene encoding 7,8-diaminopelargonic acid aminotransferase. O.I. C.G. H.G.
10.2 99.2 68.4 At5g10180 830882 AST68 Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation. O.I. C.G. H.G.
10.2 99.2 62.8 At1g78490 844185 CYP708A3 member of CYP708A O.I. C.G. H.G.
10.2 99.2 18.1 At4g05190 825867 ATK5 (ARABIDOPSIS THALIANA KINESIN 5) ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts. O.I. C.G. H.G.
10.1 99.2 21.8 At2g37300 818307 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OFPMB O.I. C.G. H.G.
10.1 99.2 12.6 At1g72670 843599 iqd8 (IQ-domain 8) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
9.9 99.1 42.2 At3g23890 821972 TOPII (TOPOISOMERASE II) Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues. O.I. C.G. H.G.
9.9 99.1 24.4 At1g11600 837704 CYP77B1 member of CYP77B O.I. C.G. H.G.
9.9 99.1 17.3 At1g80080 844348 TMM (TOO MANY MOUTHS) Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development. O.I. C.G. H.G.
9.9 99.1 16.4 At1g71990 843530 FUT13 (FUCOSYLTRANSFERASE 13) This gene encodes a Lewis-type alpha 1,4-fucosyltransferase O.I. C.G. H.G.
9.8 99.1 112.4 At4g22870 828386 leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative F:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
9.8 99.1 94.1 At5g47500 834800 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
9.8 99.1 25.1 At3g48350 823993 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
9.8 99.1 13.3 At5g15510 831404 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPFBV O.I. C.G. H.G.
9.7 99.1 43.9 At2g37790 818356 aldo/keto reductase family protein F:oxidoreductase activity;P:oxidation reduction;C:cytosol, nucleus;BOMFPA O.I. C.G. H.G.
9.7 99.1 31.9 At3g12870 820470 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.6 99.1 40.3 At3g14190 820636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.6 99.1 18.1 At1g60270 3767579 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
9.5 99.1 44.6 At1g03495 3766646 transferase/ transferase, transferring acyl groups other than amino-acyl groups F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PF O.I. C.G. H.G.
9.5 99.1 20.2 At4g02800 828171 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVA O.I. C.G. H.G.
9.3 99.1 143.4 At3g49680 824130 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. O.I. C.G. H.G.
9.3 99.1 119.9 At5g23020 832366 IMS2 (2-ISOPROPYLMALATE SYNTHASE 2) methylthioalkymalate synthase-like. Also known as 2-isopropylmalate synthase (IMS2). encodes a methylthioalkylmalate synthase involved in the biosynthesis of aliphatic glucosinolates which accepts all the omega-methylthio-2-oxoalkanoic acids needed to form the known C3 to C8 glucosinolates in Arabidopsis. O.I. C.G. H.G.
9.3 99.1 72.3 At5g61130 836234 PDCB1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1) Encodes a plasmodesmatal localized protein with callose binding activity. The function of PDCB1 is unknown but overexpression leads to the hyperaccumulation of callose. O.I. C.G. H.G.
9.3 99.1 46.0 At4g19100 2745715 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, membrane;MOBFPV O.I. C.G. H.G.
9.3 99.1 41.7 At5g51100 835183 FSD2 (FE SUPEROXIDE DISMUTASE 2) Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B. O.I. C.G. H.G.
9.3 99.1 18.1 At1g51310 841554 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase F:tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity;P:tRNA processing, RNA processing;C:chloroplast, cytoplasm;BOMFP O.I. C.G. H.G.
9.3 99.1 16.2 At1g76310 843964 CYCB2 core cell cycle genes O.I. C.G. H.G.
9.2 99.1 24.9 At1g80760 844415 NIP6 Encodes a protein with boron transporter activity. It helps to preferentially direct boron to young developing tissues in the shoot, such as immature leaves, under low boron conditions. This boron channel appears to be impermeable to water, unlike the closely related NIP5;1 boron transporter. This protein also allows the transport of glycerol, urea, and formimide but not larger uncharged solutes such as arabitol and sucrose when it is expressed heterologously. O.I. C.G. H.G.
9.1 99.1 57.9 At5g55920 835690 nucleolar protein, putative F:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVA O.I. C.G. H.G.
9.0 99.1 251.6 At3g19710 821508 BCAT4 (BRANCHED-CHAIN AMINOTRANSFERASE4) Belongs to the branched-chain amino acid aminotransferase gene family. Encodes a methionine-oxo-acid transaminase. Involved in the methionine chain elongation pathway that leads to the ultimate biosynthesis of methionine-derived glucosinolates. O.I. C.G. H.G.
9.0 99.1 14.9 At5g64640 836585 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:plasma membrane, plant-type cell wall;PBFOM O.I. C.G. H.G.
9.0 99.1 10.9 At2g37380 818314 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPB O.I. C.G. H.G.
9.0 99.1 4.6 At5g32460 3771028 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown O.I. C.G. H.G.
8.9 99.0 69.1 At2g25060 817044 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;P O.I. C.G. H.G.
8.9 99.0 42.2 At2g39290 818514 PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) Encodes a phosphatidylglycerolphosphate synthase 2C which is dual-targeted into chloroplasts and mitochondria. Mutant plants have mutant chloroplasts but normal mitochondria. O.I. C.G. H.G.
8.9 99.0 10.3 At4g28590 828977 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFA O.I. C.G. H.G.
8.8 99.0 76.7 At2g47590 819372 PHR2 (photolyase/blue-light receptor 2) photolyase/blue light photoreceptor PHR2 (PHR2) mRNA, O.I. C.G. H.G.
8.8 99.0 9.1 At3g25905 822187 CLE27 (CLAVATA3/ESR-RELATED 27) Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. O.I. C.G. H.G.
8.6 99.0 43.4 At4g10380 826630 NIP5 Essential for efficient Boron uptake and plant development under boron limitation. Also functions in arsenite transport and tolerance. O.I. C.G. H.G.
8.6 99.0 42.0 At2g31890 817747 RAP Protein contains putative RNA binding domain. Expressed in response to Pseudomonas syringae infection. Resistance requires silencing of AtRAP suggesting it functions as a negative regulator of plant disease resistance. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
66.7	99.8	33.3	At5g61290	836250	flavin-containing monooxygenase family protein / FMO family protein	F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
51.9	99.8	78.5	At3g03190	821227	ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11)	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
26.0	99.7	54.9	At3g17680	821035	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF	O.I.	C.G.	H.G.
25.7	99.7	110.0	At4g12030	826811	bile acid:sodium symporter family protein	F:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport;C:membrane;OBMPA	O.I.	C.G.	H.G.
25.1	99.6	42.8	At1g16400	838210	CYP79F2	Encodes cytochrome P450 CYP79F2.	O.I.	C.G.	H.G.
24.3	99.6	245.4	At4g30140	829137	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
22.5	99.6	248.1	At4g22490	828344	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
22.4	99.6	23.1	At4g04750	825811	carbohydrate transmembrane transporter/ sugar:hydrogen symporter	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA	O.I.	C.G.	H.G.
22.3	99.6	34.2	At5g07690	830662	ATMYB29 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 29)	Encodes a putative transcription factor (MYB29).	O.I.	C.G.	H.G.
22.3	99.6	21.5	At3g06433	3768778	-	pseudogene of nodulin MtN3 family protein	O.I.	C.G.	H.G.
21.5	99.6	145.4	At3g58990	825068	aconitase C-terminal domain-containing protein	F:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOFAPM	O.I.	C.G.	H.G.
20.1	99.6	26.1	At5g51600	835234	PLE (PLEIADE)	Mutant has defective roots. Essential for giant cell ontogenesis. Role in organizing the mitotic microtubule array during both early and late mitosis in all plant organs.	O.I.	C.G.	H.G.
19.1	99.6	67.8	At5g10140	830878	FLC (FLOWERING LOCUS C)	MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3� to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.	O.I.	C.G.	H.G.
19.1	99.6	17.8	At1g33440	840237	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOF	O.I.	C.G.	H.G.
18.8	99.5	34.6	At5g04360	830315	ATLDA (LIMIT DEXTRINASE)	Encodes an enzyme thought to be involved in the hydrolysis of the α-1,6 linkages during starch degradation in seed endosperm. However, a knockout mutant of Arabidopsis lacking limit dextrinase has normal rates of starch degradation in the leaf at night, indicating that more than one isoamylases might be involved in this process.	O.I.	C.G.	H.G.
17.1	99.5	43.4	At3g19590	821496	WD-40 repeat family protein / mitotic checkpoint protein, putative	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPA	O.I.	C.G.	H.G.
16.3	99.5	52.1	At1g31710	840058	copper amine oxidase, putative	F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA	O.I.	C.G.	H.G.
16.2	99.5	36.9	At1g65860	842897	FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1)	belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates	O.I.	C.G.	H.G.
14.9	99.4	110.3	At2g43100	818912	aconitase C-terminal domain-containing protein	F:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOAFPM	O.I.	C.G.	H.G.
14.4	99.4	24.8	At5g48470	834902	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
13.9	99.4	38.5	At5g25090	832580	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
13.8	99.4	30.9	At4g15790	827259	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;OMBPFA	O.I.	C.G.	H.G.
13.7	99.4	33.6	At5g48960	834954	5' nucleotidase family protein	F:5'-nucleotidase activity;P:biological_process unknown;C:chloroplast, chloroplast stroma;MPBO	O.I.	C.G.	H.G.
13.7	99.4	13.5	At2g45080	819115	cycp3	F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:cellular_component unknown;FOMPB	O.I.	C.G.	H.G.
13.3	99.4	16.0	At1g34245	840324	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
13.2	99.4	49.3	At2g34490	818012	CYP710A2 (cytochrome P450, family 710, subfamily A, polypeptide 2)	Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze the conversion of both 24-epi-campesterol and β-sitosterol to brassicasterol and stigmasterol, respectively, in the presence of NADPH.	O.I.	C.G.	H.G.
13.0	99.4	59.7	At2g39330	818518	JAL23 (JACALIN-RELATED LECTIN 23)	F:molecular_function unknown;P:biological_process unknown;C:vacuole;POF	O.I.	C.G.	H.G.
12.9	99.3	44.8	At1g59740	842267	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport, response to nematode;C:plasma membrane, membrane;BPMOF	O.I.	C.G.	H.G.
12.9	99.3	19.7	At4g24175	828518	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOP	O.I.	C.G.	H.G.
12.7	99.3	67.6	At2g23000	816831	scpl10 (serine carboxypeptidase-like 10)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
12.3	99.3	128.8	At4g03060	828102	AOP2 (ALKENYL HYDROXALKYL PRODUCING 2)	Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis.	O.I.	C.G.	H.G.
12.3	99.3	27.5	At3g52110	824374	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB	O.I.	C.G.	H.G.
11.7	99.3	7.7	At4g28430	828960	reticulon family protein	F:unknown;P:biological_process unknown;C:endoplasmic reticulum, chloroplast;MPOF	O.I.	C.G.	H.G.
11.6	99.3	21.1	At3g21950	821753	methyltransferase	F:methyltransferase activity;P:response to cadmium ion;C:cellular_component unknown;POBMF	O.I.	C.G.	H.G.
11.6	99.3	12.6	At3g20150	821558	kinesin motor family protein	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOFPBAV	O.I.	C.G.	H.G.
11.5	99.3	50.9	At1g62560	842553	FMO GS-OX3 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 3)	belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates	O.I.	C.G.	H.G.
11.5	99.3	32.2	At5g58390	835952	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
11.4	99.3	18.1	At3g21300	821684	RNA methyltransferase family protein	F:methyltransferase activity, RNA binding, RNA methyltransferase activity;P:RNA processing;C:unknown;BOMFAPV	O.I.	C.G.	H.G.
11.3	99.3	38.1	At3g22740	821845	HMT3	homocysteine S-methyltransferase (HMT3)	O.I.	C.G.	H.G.
11.0	99.2	46.4	At4g34160	829564	CYCD3	encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1.	O.I.	C.G.	H.G.
11.0	99.2	28.3	At3g02120	821311	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:response to cyclopentenone;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.8	99.2	34.4	At3g22880	821860	DMC1 (DISRUPTION OF MEIOTIC CONTROL 1)	Expression of the AtDMC1 is restricted to pollen mother cells in anthers and to megaspore mother cells in ovules. Similar to meiosis-specific yeast DMC gene.	O.I.	C.G.	H.G.
10.8	99.2	9.2	At3g27650	822387	LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25)	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.7	99.2	20.2	At3g10870	820257	MES17 (METHYL ESTERASE 17)	Encodes a methyl IAA esterase. Methyl IAA is believed to be an inactive form of auxin that needs to be demethylated to exert a biological effect. MES17 does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro. This gene is expressed in several tissues of seedlings and adult plants, with a higher relative level of expression in the seedling shoot apex and the adult stem.	O.I.	C.G.	H.G.
10.7	99.2	16.7	At1g10780	837621	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
10.6	99.2	31.1	At5g13840	831230	FZR3 (FIZZY-RELATED 3)	F:signal transducer activity;P:signal transduction;C:chloroplast, heterotrimeric G-protein complex;MFBOPA	O.I.	C.G.	H.G.
10.5	99.2	18.1	At5g45700	834609	NLI interacting factor (NIF) family protein	F:phosphatase activity;P:unknown;C:unknown;MOFPVB	O.I.	C.G.	H.G.
10.4	99.2	8.2	At5g55820	835676	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
10.3	99.2	68.0	At1g10522	837593	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
10.3	99.2	22.2	At5g57590	835863	BIO1 (biotin auxotroph 1)	Mutant complemented by E coli Bio A gene encoding 7,8-diaminopelargonic acid aminotransferase.	O.I.	C.G.	H.G.
10.2	99.2	68.4	At5g10180	830882	AST68	Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation.	O.I.	C.G.	H.G.
10.2	99.2	62.8	At1g78490	844185	CYP708A3	member of CYP708A	O.I.	C.G.	H.G.
10.2	99.2	18.1	At4g05190	825867	ATK5 (ARABIDOPSIS THALIANA KINESIN 5)	ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts.	O.I.	C.G.	H.G.
10.1	99.2	21.8	At2g37300	818307	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OFPMB	O.I.	C.G.	H.G.
10.1	99.2	12.6	At1g72670	843599	iqd8 (IQ-domain 8)	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
9.9	99.1	42.2	At3g23890	821972	TOPII (TOPOISOMERASE II)	Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues.	O.I.	C.G.	H.G.
9.9	99.1	24.4	At1g11600	837704	CYP77B1	member of CYP77B	O.I.	C.G.	H.G.
9.9	99.1	17.3	At1g80080	844348	TMM (TOO MANY MOUTHS)	Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development.	O.I.	C.G.	H.G.
9.9	99.1	16.4	At1g71990	843530	FUT13 (FUCOSYLTRANSFERASE 13)	This gene encodes a Lewis-type alpha 1,4-fucosyltransferase	O.I.	C.G.	H.G.
9.8	99.1	112.4	At4g22870	828386	leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative	F:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
9.8	99.1	94.1	At5g47500	834800	pectinesterase family protein	F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
9.8	99.1	25.1	At3g48350	823993	cysteine proteinase, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
9.8	99.1	13.3	At5g15510	831404	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPFBV	O.I.	C.G.	H.G.
9.7	99.1	43.9	At2g37790	818356	aldo/keto reductase family protein	F:oxidoreductase activity;P:oxidation reduction;C:cytosol, nucleus;BOMFPA	O.I.	C.G.	H.G.
9.7	99.1	31.9	At3g12870	820470	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.6	99.1	40.3	At3g14190	820636	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.6	99.1	18.1	At1g60270	3767579	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
9.5	99.1	44.6	At1g03495	3766646	transferase/ transferase, transferring acyl groups other than amino-acyl groups	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PF	O.I.	C.G.	H.G.
9.5	99.1	20.2	At4g02800	828171	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVA	O.I.	C.G.	H.G.
9.3	99.1	143.4	At3g49680	824130	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.	O.I.	C.G.	H.G.
9.3	99.1	119.9	At5g23020	832366	IMS2 (2-ISOPROPYLMALATE SYNTHASE 2)	methylthioalkymalate synthase-like. Also known as 2-isopropylmalate synthase (IMS2). encodes a methylthioalkylmalate synthase involved in the biosynthesis of aliphatic glucosinolates which accepts all the omega-methylthio-2-oxoalkanoic acids needed to form the known C3 to C8 glucosinolates in Arabidopsis.	O.I.	C.G.	H.G.
9.3	99.1	72.3	At5g61130	836234	PDCB1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1)	Encodes a plasmodesmatal localized protein with callose binding activity. The function of PDCB1 is unknown but overexpression leads to the hyperaccumulation of callose.	O.I.	C.G.	H.G.
9.3	99.1	46.0	At4g19100	2745715	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast, membrane;MOBFPV	O.I.	C.G.	H.G.
9.3	99.1	41.7	At5g51100	835183	FSD2 (FE SUPEROXIDE DISMUTASE 2)	Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B.	O.I.	C.G.	H.G.
9.3	99.1	18.1	At1g51310	841554	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	F:tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity;P:tRNA processing, RNA processing;C:chloroplast, cytoplasm;BOMFP	O.I.	C.G.	H.G.
9.3	99.1	16.2	At1g76310	843964	CYCB2	core cell cycle genes	O.I.	C.G.	H.G.
9.2	99.1	24.9	At1g80760	844415	NIP6	Encodes a protein with boron transporter activity. It helps to preferentially direct boron to young developing tissues in the shoot, such as immature leaves, under low boron conditions. This boron channel appears to be impermeable to water, unlike the closely related NIP5;1 boron transporter. This protein also allows the transport of glycerol, urea, and formimide but not larger uncharged solutes such as arabitol and sucrose when it is expressed heterologously.	O.I.	C.G.	H.G.
9.1	99.1	57.9	At5g55920	835690	nucleolar protein, putative	F:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVA	O.I.	C.G.	H.G.
9.0	99.1	251.6	At3g19710	821508	BCAT4 (BRANCHED-CHAIN AMINOTRANSFERASE4)	Belongs to the branched-chain amino acid aminotransferase gene family. Encodes a methionine-oxo-acid transaminase. Involved in the methionine chain elongation pathway that leads to the ultimate biosynthesis of methionine-derived glucosinolates.	O.I.	C.G.	H.G.
9.0	99.1	14.9	At5g64640	836585	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:plasma membrane, plant-type cell wall;PBFOM	O.I.	C.G.	H.G.
9.0	99.1	10.9	At2g37380	818314	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPB	O.I.	C.G.	H.G.
9.0	99.1	4.6	At5g32460	3771028	DNA binding	F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown	O.I.	C.G.	H.G.
8.9	99.0	69.1	At2g25060	817044	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
8.9	99.0	42.2	At2g39290	818514	PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1)	Encodes a phosphatidylglycerolphosphate synthase 2C which is dual-targeted into chloroplasts and mitochondria. Mutant plants have mutant chloroplasts but normal mitochondria.	O.I.	C.G.	H.G.
8.9	99.0	10.3	At4g28590	828977	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFA	O.I.	C.G.	H.G.
8.8	99.0	76.7	At2g47590	819372	PHR2 (photolyase/blue-light receptor 2)	photolyase/blue light photoreceptor PHR2 (PHR2) mRNA,	O.I.	C.G.	H.G.
8.8	99.0	9.1	At3g25905	822187	CLE27 (CLAVATA3/ESR-RELATED 27)	Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.	O.I.	C.G.	H.G.
8.6	99.0	43.4	At4g10380	826630	NIP5	Essential for efficient Boron uptake and plant development under boron limitation. Also functions in arsenite transport and tolerance.	O.I.	C.G.	H.G.
8.6	99.0	42.0	At2g31890	817747	RAP	Protein contains putative RNA binding domain. Expressed in response to Pseudomonas syringae infection. Resistance requires silencing of AtRAP suggesting it functions as a negative regulator of plant disease resistance.	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	-
Assay name	E-MEXP-1799-raw-cel-1665601126
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-1799-raw-cel-1665601126 GSE experiment -

GSM ID -

Assay name E-MEXP-1799-raw-cel-1665601126

GSE experiment -