Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-MEXP-1784-raw-cel-1661573032
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
132.499.9184.2At2g17850816295-F:molecular_function unknown;P:aging;C:endomembrane system;BOPAMFO.I.C.G.H.G.
71.699.9387.4At3g03270821303universal stress protein (USP) family protein / early nodulin ENOD18 family proteinF:unknown;P:response to stress;C:plasma membrane, membrane;PFMBOO.I.C.G.H.G.
60.799.894.3At5g13870831233EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)EXGT-A4, endoxyloglucan transferase,O.I.C.G.H.G.
48.399.861.1At3g27220822341kelch repeat-containing proteinF:unknown;P:biological_process unknown;C:Golgi apparatus;MBOVPFAO.I.C.G.H.G.
47.699.8180.1At5g15120831364unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
45.799.848.8At3g14370820658WAG2The WAG2 and its homolog, WAG1 each encodes protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons.O.I.C.G.H.G.
35.999.7109.9At2g19590816478ACO1 (ACC OXIDASE 1)encodes a protein whose sequence is similar to 1-aminocyclopropane-1-carboxylate oxidaseO.I.C.G.H.G.
35.299.7150.5At4g30290829152XTH19 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19)putative xyloglucan endotransglycosylase/hydrolase, expressed throughout both the main and the lateral root, with intensive expression at the dividing and elongating regions. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow.O.I.C.G.H.G.
34.499.7120.3At5g39890833986unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
34.199.763.7At2g29870817537major intrinsic family protein / MIP family proteinF:water channel activity;P:transport;C:membrane;BPMOFAO.I.C.G.H.G.
33.399.7143.3At1g76930844028ATEXT4 (EXTENSIN 4)Encodes an Arabidopsis extensin gene that belongs to cell-wall hydroxyproline-rich glycoproteins. The cross-link of extensins enforces cell wall strength. Transgenic plants overexpressing this gene show an increase in stem thickness.O.I.C.G.H.G.
32.899.7152.4At1g43800840977acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putativeF:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:membrane;PBOMO.I.C.G.H.G.
32.199.798.6At1g65310842839XTH17 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17)putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.O.I.C.G.H.G.
31.399.7119.9At1g11545837698xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOO.I.C.G.H.G.
31.199.7455.4At4g27450828854unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;PBOMFO.I.C.G.H.G.
30.699.7143.1At5g66985836833unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
30.599.7134.3At1g75780843911TUB1beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responsesO.I.C.G.H.G.
30.199.764.2At4g33560829495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
28.499.763.6At2g19580816477TET2 (TETRASPANIN2)Member of TETRASPANIN familyO.I.C.G.H.G.
27.399.789.8At3g25930822190universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:cellular_component unknown;PO.I.C.G.H.G.
26.799.716.8At1g27670839659unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
26.699.743.0At5g02580831095unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
26.199.7469.1At3g21720821726ICL (ISOCITRATE LYASE)Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL).O.I.C.G.H.G.
24.699.6147.8At1g33055840201unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
24.399.6325.7At2g16060816103AHB1 (ARABIDOPSIS HEMOGLOBIN 1)Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen.O.I.C.G.H.G.
24.399.656.0At3g23800821962SBP3 (selenium-binding protein 3)F:selenium binding;P:unknown;C:cellular_component unknown;OMBPAO.I.C.G.H.G.
23.899.6249.8At5g10430830907AGP4 (ARABINOGALACTAN PROTEIN 4)Encodes arabinogalactan-protein (AGP4).O.I.C.G.H.G.
23.499.640.3At4g23870828486unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
23.299.6158.1At3g43190823393SUS4Encodes a protein with sucrose synthase activity (SUS4).O.I.C.G.H.G.
23.199.663.8At5g53980835481ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.O.I.C.G.H.G.
23.099.638.7At4g13790827013auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus, response to red light, response to far red light;C:unknown;POO.I.C.G.H.G.
21.799.659.1At5g01320830867pyruvate decarboxylase, putativeF:in 6 functions;P:unknown;C:cellular_component unknown;BOFPAMVO.I.C.G.H.G.
21.499.625.6At2g45050819112zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMOVO.I.C.G.H.G.
21.499.624.9At2g20950816629-F:unknown;P:unknown;C:unknown;MPFOBAVO.I.C.G.H.G.
21.499.68.9At3g03830821123auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
21.399.675.1At3g28200822446peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBO.I.C.G.H.G.
21.199.625.9At4g14980827157-F:unknown;P:intracellular signaling cascade;C:unknown;POMFO.I.C.G.H.G.
20.999.652.5At5g63650836485SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.O.I.C.G.H.G.
20.899.6218.7At1g19530838540unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
19.899.6133.0At4g18970827632GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
19.799.688.8At5g47060834752senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
19.599.612.0At1g58410842210disease resistance protein (CC-NBS-LRR class), putativeF:protein binding, ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBOFAO.I.C.G.H.G.
19.499.621.5At1g13430837903ST4C (SULFOTRANSFERASE 4C)Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiements show that this enzyme does not act brassinosteroids. ST4C is expressed in the roots and transcript levels rise in response to cytokinin treatment.O.I.C.G.H.G.
19.199.641.0At3g10040820165transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVAO.I.C.G.H.G.
18.599.564.1At4g40090830172AGP3 (arabinogalactan-protein 3)F:unknown;P:multicellular organismal development;C:endomembrane system;PO.I.C.G.H.G.
17.999.585.0At3g25900822186HMT-1F:homocysteine S-methyltransferase activity;P:methionine biosynthetic process;C:cellular_component unknown;BOMPFAO.I.C.G.H.G.
17.899.573.7At3g29970822700germination protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
17.799.5264.2At5g19550832075ASP2 (ASPARTATE AMINOTRANSFERASE 2)Nitrogen metabolism. Major cytosolic isoenzyme controlling aspartate biosynthesis in the light.O.I.C.G.H.G.
17.599.5227.2At3g12610820441DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100)Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes.O.I.C.G.H.G.
17.399.5217.0At4g32460829381-F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PBO.I.C.G.H.G.
17.199.56.2At5g53410835422unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
16.799.5320.2At4g12510826863protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
16.799.5196.7At4g33070829444pyruvate decarboxylase, putativeF:in 6 functions;P:unknown;C:membrane;BOFPAMVO.I.C.G.H.G.
16.799.543.3At2g14210815907AGL44 (AGAMOUS-LIKE 44)MADS box gene, transcription factorO.I.C.G.H.G.
16.599.528.6At5g14390831290-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMPFVO.I.C.G.H.G.
16.599.512.0At5g42840834295DC1 domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
16.499.532.1At4g13860827020glycine-rich RNA-binding protein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAO.I.C.G.H.G.
16.199.527.3At3g48700824031ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13)F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAVO.I.C.G.H.G.
16.099.5176.1At1g04250839568AXR3 (AUXIN RESISTANT 3)Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.O.I.C.G.H.G.
15.999.5319.2At2g37130818289peroxidase 21 (PER21) (P21) (PRXR5)F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus;C:endomembrane system;PFOO.I.C.G.H.G.
15.699.513.3At4g23030828402MATE efflux protein-relatedF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAMO.I.C.G.H.G.
15.399.4153.2At5g26280832697meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PFOMO.I.C.G.H.G.
15.299.4119.9At5g24570832528unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
15.299.448.0At4g14465827093DNA-binding protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO.I.C.G.H.G.
15.299.48.3At1g77200844056AP2 domain-containing transcription factor TINY, putativeencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
15.199.474.5At5g02260831736ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
15.099.43.0At5g596403771538transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
14.999.489.9At3g13650820569disease resistance responseF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
14.999.432.1At3g52370824402FLA15 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15 PRECURSOR)F:unknown;P:cell adhesion;C:endomembrane system;BOMPFAVO.I.C.G.H.G.
14.899.4180.7At2g21140816649ATPRP2 (PROLINE-RICH PROTEIN 2)Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques.O.I.C.G.H.G.
14.799.4496.6At1g77120844047ADH1 (ALCOHOL DEHYDROGENASE 1)Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.O.I.C.G.H.G.
14.599.4214.2At3g27770822398unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOO.I.C.G.H.G.
14.599.4196.7At5g65390836664AGP7F:unknown;P:unknown;C:anchored to membrane;BMOPFVAO.I.C.G.H.G.
14.499.423.3At3g02610820709acyl-[acyl-carrier-protein] desaturase/ oxidoreductase/ transition metal ion bindingF:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOMO.I.C.G.H.G.
14.399.432.7At1g05810837091RABA5E (RAB GTPASE HOMOLOG A5E)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:chloroplast;MOFPBVAO.I.C.G.H.G.
14.399.421.6At1g62610842558short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
14.199.419.6At2g41310818730ATRR3 (RESPONSE REGULATOR 3)Encodes an A- type response Regulator that is primarily expressed in the root and is involved in cytokinin-mediated signalling.O.I.C.G.H.G.
14.199.48.5At5g49800835043-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPBFO.I.C.G.H.G.
14.199.48.3At1g35320840421unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.999.439.5At5g23220832386NIC3 (NICOTINAMIDASE 3)F:nicotinamidase activity, catalytic activity;P:metabolic process;C:unknown;BOAFPO.I.C.G.H.G.
13.899.4161.5At5g03240831899UBQ3 (POLYUBIQUITIN 3)encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments.O.I.C.G.H.G.
13.599.438.1At4g24110828511unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
13.499.478.6At4g40060830169ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 16)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.O.I.C.G.H.G.
13.499.419.4At4g02700828201SULTR3F:sulfate transmembrane transporter activity;P:sulfate transport, transport;C:integral to membrane, membrane;BOMPFAO.I.C.G.H.G.
13.399.4156.2At4g39675830122unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.199.417.7At2g34080817969cysteine proteinase, putativeF:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
13.199.414.4At2g05810815132armadillo/beta-catenin repeat family proteinF:binding;P:unknown;C:cellular_component unknown;PMFOO.I.C.G.H.G.
13.099.4227.4At1g04040839325acid phosphatase class B family proteinF:acid phosphatase activity;P:biological_process unknown;C:cell wall, plasma membrane, vacuole, plant-type cell wall;BPOMO.I.C.G.H.G.
12.899.3165.0At2g43535818955trypsin inhibitor, putativeEncodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
12.699.3702.3At2g38530818435LTP2 (LIPID TRANSFER PROTEIN 2)Involved in lipid transfer between membranes. Belongs to a family of Lipid transfer proteins. Sequence similarity to other plant/Arabidopsis LPT genes but highest similarity to LPT1. Stress and pathogen-inducible motifs found in the upstream region. Expressed in flower, leaves and siliques but absent in roots. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
12.699.3165.6At1g01120839395KCS1 (3-KETOACYL-COA SYNTHASE 1)Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis.O.I.C.G.H.G.
12.699.327.4At3g23150821891ETR2 (ethylene response 2)Involved in ethylene perception in ArabidopsisO.I.C.G.H.G.
12.599.3384.7At1g78850844222curculin-like (mannose-binding) lectin family proteincurculin-like (mannose-binding) lectin family protein, low similarity to ser/thr protein kinase from Zea mays (GI:2598067); contains Pfam lectin (probable mannose binding) domain PF01453 but not the protein kinase domain of the Z. mays proteinO.I.C.G.H.G.
12.599.316.7At5g02200830832FHL (FAR-RED-ELONGATED HYPOCOTYL1-LIKE)Encodes a small plant-specific protein with both nuclear localization and nuclear export signals that is specifically required, together with FHY1, for the light-regulated nuclear accumulation of phyA.O.I.C.G.H.G.
12.499.3111.9At4g10270826619wound-responsive family proteinF:molecular_function unknown;P:response to wounding;C:unknown;PO.I.C.G.H.G.
12.499.367.8At5g65640836690bHLH093 (beta HLH protein 93)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
12.499.310.7At4g02180827483DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
12.399.332.2At1g47210841124cyclin family proteinF:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus, cytoplasm;MPFOVO.I.C.G.H.G.
12.299.312.4At5g15150831367ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem.O.I.C.G.H.G.
12.199.3351.6At4g23400828439PIP1F:water channel activity;P:transport, response to salt stress;C:plasma membrane, membrane;BPMOFAVO.I.C.G.H.G.



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