CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-173-raw-cel-357965452

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
176.7 100.0 43.5 At4g23310 828430 receptor-like protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:defense response;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
129.7 99.9 66.3 At2g24160 3768109 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
103.2 99.9 29.1 At2g29110 817459 ATGLR2.8 member of Putative ligand-gated ion channel subunit family O.I. C.G. H.G.
98.0 99.9 27.2 At1g66960 843014 lupeol synthase, putative / 2,3-oxidosqualene-triterpenoid cyclase, putative F:lupeol synthase activity;P:pentacyclic triterpenoid biosynthetic process;C:unknown;BPOFM O.I. C.G. H.G.
96.1 99.9 104.6 At4g23150 828414 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
95.1 99.9 76.1 At5g64000 836521 SAL2 3'(2'),5'-bisphosphate nucleotidase O.I. C.G. H.G.
78.5 99.9 25.6 At4g23250 828424 EMB1290 (EMBRYO DEFECTIVE 1290) F:protein kinase activity, kinase activity;P:embryonic development ending in seed dormancy, protein amino acid autophosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
60.4 99.8 22.3 At1g11300 837672 ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
55.5 99.8 74.7 At3g11010 820272 AtRLP34 (Receptor Like Protein 34) F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAV O.I. C.G. H.G.
50.2 99.8 24.3 At3g47090 823862 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:chloroplast;MPOBFVA O.I. C.G. H.G.
49.9 99.8 163.1 At1g35710 840475 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
45.9 99.8 131.4 At4g10500 826642 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:unknown;POBFM O.I. C.G. H.G.
43.6 99.8 44.5 At5g39100 833903 GLP6 (GERMIN-LIKE PROTEIN 6) germin-like protein (GLP6) O.I. C.G. H.G.
43.5 99.8 87.9 At2g32680 817828 AtRLP23 (Receptor Like Protein 23) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
43.2 99.8 28.7 At3g49340 824096 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:unknown;MOPVBAF O.I. C.G. H.G.
42.4 99.8 147.3 At1g65500 842862 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
41.6 99.8 180.4 At3g51860 824349 CAX3 (CATION EXCHANGER 3) F:cation:cation antiporter activity, calcium:cation antiporter activity, calcium:hydrogen antiporter activity;P:in 9 processes;C:plant-type vacuole membrane, vacuolar membrane, vacuole;BFOPAM O.I. C.G. H.G.
39.4 99.8 40.9 At2g29120 817460 ATGLR2.7 member of Putative ligand-gated ion channel subunit family O.I. C.G. H.G.
39.1 99.8 99.9 At1g21525 3766777 - pseudogene of unknown protein O.I. C.G. H.G.
38.3 99.8 150.9 At3g57240 824891 BG3 (BETA-1,3-GLUCANASE 3) encodes a member of glycosyl hydrolase family 17 O.I. C.G. H.G.
37.2 99.7 26.7 At1g52770 841710 phototropic-responsive NPH3 family protein F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
36.4 99.7 39.8 At1g57650 842141 - F:unknown;P:defense response;C:cellular_component unknown;PMBOFAV O.I. C.G. H.G.
35.5 99.7 150.7 At1g68570 843186 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. C.G. H.G.
35.5 99.7 51.7 At1g56510 842104 WRR4 (WHITE RUST RESISTANCE 4) TIR-NB-LRR protein that confers resistance to four races of Albugo candida. O.I. C.G. H.G.
35.4 99.7 87.9 At1g66880 843006 serine/threonine protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
35.0 99.7 59.8 At5g60900 836211 RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1) Encodes a receptor-like protein kinase. O.I. C.G. H.G.
34.1 99.7 105.3 At1g56120 842064 kinase F:kinase activity;P:protein amino acid phosphorylation;C:unknown;PMOBFVA O.I. C.G. H.G.
32.6 99.7 90.3 At3g13560 820558 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFO O.I. C.G. H.G.
32.2 99.7 38.8 At1g76970 844033 VHS domain-containing protein / GAT domain-containing protein F:protein transporter activity;P:intracellular protein transport, intra-Golgi vesicle-mediated transport;C:Golgi stack, intracellular;MFPOB O.I. C.G. H.G.
31.6 99.7 37.1 At3g23110 821886 AtRLP37 (Receptor Like Protein 37) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
30.8 99.7 97.8 At2g17040 816209 anac036 (Arabidopsis NAC domain containing protein 36) F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;P O.I. C.G. H.G.
29.3 99.7 21.2 At3g60470 825218 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
28.8 99.7 65.6 At4g00700 828031 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
28.2 99.7 13.8 At1g10920 837635 LOV1 Encodes LOV1, a disease susceptibility gene that, paradoxically, is a member of the NBS-LRR resistance gene family. Conditions susceptibility to the fungus Cochliobolus victoriae and victorin-dependent induction of defense-associated proteins. Saturation mutagenesis identified 59 lov mutations that all display reduced susceptibility to vitorin. Mutations in known defense response pathways do not prevent susceptibility to C. victoriae. O.I. C.G. H.G.
28.1 99.7 265.1 At2g43570 818959 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMV O.I. C.G. H.G.
28.1 99.7 64.1 At2g19130 816430 S-locus lectin protein kinase family protein F:protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
27.8 99.7 17.3 At4g11900 826797 S-locus lectin protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;PMOFBV O.I. C.G. H.G.
25.7 99.7 72.9 At5g46050 834646 PTR3 (PEPTIDE TRANSPORTER 3) Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies. O.I. C.G. H.G.
25.7 99.7 37.4 At1g29240 839798 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PF O.I. C.G. H.G.
25.5 99.7 24.2 At2g43850 818989 ankyrin protein kinase, putative (APK1) F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:regulation of signal transduction, protein amino acid phosphorylation;C:chloroplast;MOPBFVA O.I. C.G. H.G.
25.2 99.6 13.6 At1g09930 837525 ATOPT2 oligopeptide transporter O.I. C.G. H.G.
25.0 99.6 14.1 At4g16920 827400 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVA O.I. C.G. H.G.
24.2 99.6 31.9 At1g30410 839921 ATMRP13 member of MRP subfamily O.I. C.G. H.G.
24.0 99.6 170.4 At2g18660 816381 EXLB3 (EXPANSIN-LIKE B3 PRECURSOR) Encodes PNP-A (Plant Natriuretic Peptide A). PNPs are a class of systemically mobile molecules distantly related to expansins; their biological role has remained elusive. PNP-A contains a signal peptide domain and is secreted into the extracellular space. Co-expression analyses using microarray data suggest that PNP-A may function as a component of plant defence response and SAR in particular, and could be classified as a newly identified PR protein. O.I. C.G. H.G.
23.7 99.6 12.2 At4g21940 828283 CPK15 member of Calcium Dependent Protein Kinase O.I. C.G. H.G.
23.1 99.6 22.6 At3g07520 819940 GLR1.4 (GLUTAMATE RECEPTOR 1.4) member of Putative ligand-gated ion channel subunit family. Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis. O.I. C.G. H.G.
22.8 99.6 39.5 At1g23840 838995 unknown protein F:unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
22.7 99.6 36.7 At4g11000 826701 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA O.I. C.G. H.G.
22.6 99.6 50.9 At3g48090 823964 EDS1 (enhanced disease susceptibility 1) Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases. O.I. C.G. H.G.
22.1 99.6 9.0 At1g71390 843480 AtRLP11 (Receptor Like Protein 11) F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
21.6 99.6 44.0 At1g56150 842068 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
21.5 99.6 57.8 At4g34480 829599 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
21.2 99.6 40.3 At5g62620 836383 galactosyltransferase family protein F:transferase activity, transferring hexosyl groups, sugar binding, galactosyltransferase activity;P:protein amino acid glycosylation;C:chloroplast;MPOFB O.I. C.G. H.G.
20.5 99.6 24.7 At5g43910 834413 pfkB-type carbohydrate kinase family protein F:kinase activity, ribokinase activity;P:D-ribose metabolic process;C:cellular_component unknown;BOMPAF O.I. C.G. H.G.
20.3 99.6 14.0 At1g35617 840460 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVF O.I. C.G. H.G.
20.2 99.6 27.4 At1g20350 838623 ATTIM17-1 mitochondrial inner membrane translocase O.I. C.G. H.G.
20.0 99.6 44.7 At4g37560 829911 formamidase, putative / formamide amidohydrolase, putative F:formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;P:metabolic process;C:cellular_component unknown;BOFAP O.I. C.G. H.G.
19.7 99.6 26.5 At4g23610 828461 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.6 99.6 88.4 At1g48320 841252 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPM O.I. C.G. H.G.
19.1 99.6 189.3 At1g08450 837365 CRT3 (CALRETICULIN 3) Encodes calreticulin CRT3. O.I. C.G. H.G.
18.9 99.5 93.7 At5g52540 835330 unknown protein F:unknown;P:unknown;C:chloroplast envelope;BOPA O.I. C.G. H.G.
18.6 99.5 43.9 At1g73805 843716 calmodulin binding F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
18.5 99.5 18.8 At1g17610 838337 disease resistance protein-related F:transmembrane receptor activity, ATP binding;P:signal transduction, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBOMF O.I. C.G. H.G.
18.3 99.5 48.6 At5g61010 836222 ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. O.I. C.G. H.G.
18.1 99.5 13.4 At4g38560 830013 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBAFV O.I. C.G. H.G.
17.7 99.5 17.8 At4g23130 828412 CRK5 (CYSTEINE-RICH RLK5) Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) O.I. C.G. H.G.
17.5 99.5 40.2 At5g41400 834142 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
17.3 99.5 81.4 At1g73800 - - O.I. C.G. H.G.
16.7 99.5 71.8 At1g74710 843810 isochorismate synthase 1 (ICS1) / isochorismate mutase Encodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870). O.I. C.G. H.G.
16.7 99.5 44.0 At4g25000 828603 AMY1 (ALPHA-AMYLASE-LIKE) Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830). O.I. C.G. H.G.
16.7 99.5 37.5 At1g11330 837675 S-locus lectin protein kinase family protein F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
16.5 99.5 51.8 At3g15350 820766 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein F:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process;C:endomembrane system, integral to membrane, membrane;MPBVO O.I. C.G. H.G.
16.2 99.5 123.4 At5g53370 835418 PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F) F:pectinesterase activity;P:cell wall modification;C:cell wall;PBFMO O.I. C.G. H.G.
16.1 99.5 24.0 At5g06610 830549 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
15.8 99.5 136.6 At1g55210 841964 disease resistance response F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
15.8 99.5 38.5 At2g33580 817923 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein F:kinase activity;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
15.8 99.5 13.9 At4g23320 828431 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
15.7 99.5 33.3 At3g12830 820465 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
15.6 99.5 25.4 At4g23880 828487 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPF O.I. C.G. H.G.
15.5 99.5 53.4 At3g27110 822330 peptidase M48 family protein F:metalloendopeptidase activity;P:proteolysis;C:chloroplast, membrane;BOAPF O.I. C.G. H.G.
15.5 99.5 18.0 At1g69720 843308 ho3 (HEME OXYGENASE 3) Encodes a member (HO3) of the heme oxygenase family. O.I. C.G. H.G.
15.4 99.5 66.7 At5g38990 833891 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
15.4 99.5 17.7 At1g42705 3767274 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
15.2 99.4 58.6 At4g37310 829886 CYP81H1 member of CYP81H O.I. C.G. H.G.
15.1 99.4 24.1 At2g23200 816852 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
14.4 99.4 21.8 At4g18890 827623 brassinosteroid signalling positive regulator-related F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;POMBF O.I. C.G. H.G.
14.4 99.4 17.9 At1g14260 837987 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV O.I. C.G. H.G.
14.3 99.4 73.3 At2g26190 817159 calmodulin-binding family protein F:calmodulin binding;P:N-terminal protein myristoylation;C:unknown;PFOB O.I. C.G. H.G.
14.3 99.4 15.7 At2g29090 817457 CYP707A2 Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition. O.I. C.G. H.G.
14.3 99.4 10.7 At3g26320 822236 CYP71B36 putative cytochrome P450 O.I. C.G. H.G.
14.2 99.4 73.4 At4g23810 828481 WRKY53 member of WRKY Transcription Factor; Group III O.I. C.G. H.G.
14.1 99.4 35.4 At5g44870 834517 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA O.I. C.G. H.G.
13.9 99.4 17.7 At3g24090 821995 glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase F:sugar binding, transaminase activity, glutamine-fructose-6-phosphate transaminase (isomerizing) activity;P:carbohydrate biosynthetic process, carbohydrate metabolic process, metabolic process;C:cytoplasm;OBMAFPV O.I. C.G. H.G.
13.7 99.4 231.5 At5g55450 835638 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:response to other organism, lipid transport;C:endomembrane system;P O.I. C.G. H.G.
13.7 99.4 49.3 At1g71330 843474 ATNAP5 member of NAP subfamily O.I. C.G. H.G.
13.6 99.4 72.9 At2g29350 817484 SAG13 senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase O.I. C.G. H.G.
13.6 99.4 24.0 At4g19240 827664 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.5 99.4 68.4 At1g10340 837573 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA O.I. C.G. H.G.
13.5 99.4 41.2 At4g28490 828967 HAE (HAESA) member of Receptor kinase-like protein family O.I. C.G. H.G.
13.4 99.4 177.1 At5g24530 832524 DMR6 (DOWNY MILDEW RESISTANT 6) Encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
176.7	100.0	43.5	At4g23310	828430	receptor-like protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:defense response;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
129.7	99.9	66.3	At2g24160	3768109	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
103.2	99.9	29.1	At2g29110	817459	ATGLR2.8	member of Putative ligand-gated ion channel subunit family	O.I.	C.G.	H.G.
98.0	99.9	27.2	At1g66960	843014	lupeol synthase, putative / 2,3-oxidosqualene-triterpenoid cyclase, putative	F:lupeol synthase activity;P:pentacyclic triterpenoid biosynthetic process;C:unknown;BPOFM	O.I.	C.G.	H.G.
96.1	99.9	104.6	At4g23150	828414	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
95.1	99.9	76.1	At5g64000	836521	SAL2	3'(2'),5'-bisphosphate nucleotidase	O.I.	C.G.	H.G.
78.5	99.9	25.6	At4g23250	828424	EMB1290 (EMBRYO DEFECTIVE 1290)	F:protein kinase activity, kinase activity;P:embryonic development ending in seed dormancy, protein amino acid autophosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
60.4	99.8	22.3	At1g11300	837672	ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
55.5	99.8	74.7	At3g11010	820272	AtRLP34 (Receptor Like Protein 34)	F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAV	O.I.	C.G.	H.G.
50.2	99.8	24.3	At3g47090	823862	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:chloroplast;MPOBFVA	O.I.	C.G.	H.G.
49.9	99.8	163.1	At1g35710	840475	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
45.9	99.8	131.4	At4g10500	826642	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:unknown;POBFM	O.I.	C.G.	H.G.
43.6	99.8	44.5	At5g39100	833903	GLP6 (GERMIN-LIKE PROTEIN 6)	germin-like protein (GLP6)	O.I.	C.G.	H.G.
43.5	99.8	87.9	At2g32680	817828	AtRLP23 (Receptor Like Protein 23)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
43.2	99.8	28.7	At3g49340	824096	cysteine proteinase, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:unknown;MOPVBAF	O.I.	C.G.	H.G.
42.4	99.8	147.3	At1g65500	842862	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
41.6	99.8	180.4	At3g51860	824349	CAX3 (CATION EXCHANGER 3)	F:cation:cation antiporter activity, calcium:cation antiporter activity, calcium:hydrogen antiporter activity;P:in 9 processes;C:plant-type vacuole membrane, vacuolar membrane, vacuole;BFOPAM	O.I.	C.G.	H.G.
39.4	99.8	40.9	At2g29120	817460	ATGLR2.7	member of Putative ligand-gated ion channel subunit family	O.I.	C.G.	H.G.
39.1	99.8	99.9	At1g21525	3766777	-	pseudogene of unknown protein	O.I.	C.G.	H.G.
38.3	99.8	150.9	At3g57240	824891	BG3 (BETA-1,3-GLUCANASE 3)	encodes a member of glycosyl hydrolase family 17	O.I.	C.G.	H.G.
37.2	99.7	26.7	At1g52770	841710	phototropic-responsive NPH3 family protein	F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
36.4	99.7	39.8	At1g57650	842141	-	F:unknown;P:defense response;C:cellular_component unknown;PMBOFAV	O.I.	C.G.	H.G.
35.5	99.7	150.7	At1g68570	843186	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF	O.I.	C.G.	H.G.
35.5	99.7	51.7	At1g56510	842104	WRR4 (WHITE RUST RESISTANCE 4)	TIR-NB-LRR protein that confers resistance to four races of Albugo candida.	O.I.	C.G.	H.G.
35.4	99.7	87.9	At1g66880	843006	serine/threonine protein kinase family protein	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
35.0	99.7	59.8	At5g60900	836211	RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1)	Encodes a receptor-like protein kinase.	O.I.	C.G.	H.G.
34.1	99.7	105.3	At1g56120	842064	kinase	F:kinase activity;P:protein amino acid phosphorylation;C:unknown;PMOBFVA	O.I.	C.G.	H.G.
32.6	99.7	90.3	At3g13560	820558	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFO	O.I.	C.G.	H.G.
32.2	99.7	38.8	At1g76970	844033	VHS domain-containing protein / GAT domain-containing protein	F:protein transporter activity;P:intracellular protein transport, intra-Golgi vesicle-mediated transport;C:Golgi stack, intracellular;MFPOB	O.I.	C.G.	H.G.
31.6	99.7	37.1	At3g23110	821886	AtRLP37 (Receptor Like Protein 37)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
30.8	99.7	97.8	At2g17040	816209	anac036 (Arabidopsis NAC domain containing protein 36)	F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;P	O.I.	C.G.	H.G.
29.3	99.7	21.2	At3g60470	825218	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
28.8	99.7	65.6	At4g00700	828031	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
28.2	99.7	13.8	At1g10920	837635	LOV1	Encodes LOV1, a disease susceptibility gene that, paradoxically, is a member of the NBS-LRR resistance gene family. Conditions susceptibility to the fungus Cochliobolus victoriae and victorin-dependent induction of defense-associated proteins. Saturation mutagenesis identified 59 lov mutations that all display reduced susceptibility to vitorin. Mutations in known defense response pathways do not prevent susceptibility to C. victoriae.	O.I.	C.G.	H.G.
28.1	99.7	265.1	At2g43570	818959	chitinase, putative	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMV	O.I.	C.G.	H.G.
28.1	99.7	64.1	At2g19130	816430	S-locus lectin protein kinase family protein	F:protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
27.8	99.7	17.3	At4g11900	826797	S-locus lectin protein kinase family protein	F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;PMOFBV	O.I.	C.G.	H.G.
25.7	99.7	72.9	At5g46050	834646	PTR3 (PEPTIDE TRANSPORTER 3)	Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies.	O.I.	C.G.	H.G.
25.7	99.7	37.4	At1g29240	839798	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PF	O.I.	C.G.	H.G.
25.5	99.7	24.2	At2g43850	818989	ankyrin protein kinase, putative (APK1)	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:regulation of signal transduction, protein amino acid phosphorylation;C:chloroplast;MOPBFVA	O.I.	C.G.	H.G.
25.2	99.6	13.6	At1g09930	837525	ATOPT2	oligopeptide transporter	O.I.	C.G.	H.G.
25.0	99.6	14.1	At4g16920	827400	disease resistance protein (TIR-NBS-LRR class), putative	F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVA	O.I.	C.G.	H.G.
24.2	99.6	31.9	At1g30410	839921	ATMRP13	member of MRP subfamily	O.I.	C.G.	H.G.
24.0	99.6	170.4	At2g18660	816381	EXLB3 (EXPANSIN-LIKE B3 PRECURSOR)	Encodes PNP-A (Plant Natriuretic Peptide A). PNPs are a class of systemically mobile molecules distantly related to expansins; their biological role has remained elusive. PNP-A contains a signal peptide domain and is secreted into the extracellular space. Co-expression analyses using microarray data suggest that PNP-A may function as a component of plant defence response and SAR in particular, and could be classified as a newly identified PR protein.	O.I.	C.G.	H.G.
23.7	99.6	12.2	At4g21940	828283	CPK15	member of Calcium Dependent Protein Kinase	O.I.	C.G.	H.G.
23.1	99.6	22.6	At3g07520	819940	GLR1.4 (GLUTAMATE RECEPTOR 1.4)	member of Putative ligand-gated ion channel subunit family. Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis.	O.I.	C.G.	H.G.
22.8	99.6	39.5	At1g23840	838995	unknown protein	F:unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
22.7	99.6	36.7	At4g11000	826701	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA	O.I.	C.G.	H.G.
22.6	99.6	50.9	At3g48090	823964	EDS1 (enhanced disease susceptibility 1)	Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases.	O.I.	C.G.	H.G.
22.1	99.6	9.0	At1g71390	843480	AtRLP11 (Receptor Like Protein 11)	F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
21.6	99.6	44.0	At1g56150	842068	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
21.5	99.6	57.8	At4g34480	829599	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
21.2	99.6	40.3	At5g62620	836383	galactosyltransferase family protein	F:transferase activity, transferring hexosyl groups, sugar binding, galactosyltransferase activity;P:protein amino acid glycosylation;C:chloroplast;MPOFB	O.I.	C.G.	H.G.
20.5	99.6	24.7	At5g43910	834413	pfkB-type carbohydrate kinase family protein	F:kinase activity, ribokinase activity;P:D-ribose metabolic process;C:cellular_component unknown;BOMPAF	O.I.	C.G.	H.G.
20.3	99.6	14.0	At1g35617	840460	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVF	O.I.	C.G.	H.G.
20.2	99.6	27.4	At1g20350	838623	ATTIM17-1	mitochondrial inner membrane translocase	O.I.	C.G.	H.G.
20.0	99.6	44.7	At4g37560	829911	formamidase, putative / formamide amidohydrolase, putative	F:formamidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;P:metabolic process;C:cellular_component unknown;BOFAP	O.I.	C.G.	H.G.
19.7	99.6	26.5	At4g23610	828461	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.6	99.6	88.4	At1g48320	841252	thioesterase family protein	F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPM	O.I.	C.G.	H.G.
19.1	99.6	189.3	At1g08450	837365	CRT3 (CALRETICULIN 3)	Encodes calreticulin CRT3.	O.I.	C.G.	H.G.
18.9	99.5	93.7	At5g52540	835330	unknown protein	F:unknown;P:unknown;C:chloroplast envelope;BOPA	O.I.	C.G.	H.G.
18.6	99.5	43.9	At1g73805	843716	calmodulin binding	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.5	99.5	18.8	At1g17610	838337	disease resistance protein-related	F:transmembrane receptor activity, ATP binding;P:signal transduction, apoptosis, innate immune response;C:intrinsic to membrane, endomembrane system;PBOMF	O.I.	C.G.	H.G.
18.3	99.5	48.6	At5g61010	836222	ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2)	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	O.I.	C.G.	H.G.
18.1	99.5	13.4	At4g38560	830013	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBAFV	O.I.	C.G.	H.G.
17.7	99.5	17.8	At4g23130	828412	CRK5 (CYSTEINE-RICH RLK5)	Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)	O.I.	C.G.	H.G.
17.5	99.5	40.2	At5g41400	834142	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
17.3	99.5	81.4	At1g73800		-	-	O.I.	C.G.	H.G.
16.7	99.5	71.8	At1g74710	843810	isochorismate synthase 1 (ICS1) / isochorismate mutase	Encodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870).	O.I.	C.G.	H.G.
16.7	99.5	44.0	At4g25000	828603	AMY1 (ALPHA-AMYLASE-LIKE)	Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830).	O.I.	C.G.	H.G.
16.7	99.5	37.5	At1g11330	837675	S-locus lectin protein kinase family protein	F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
16.5	99.5	51.8	At3g15350	820766	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	F:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:carbohydrate biosynthetic process;C:endomembrane system, integral to membrane, membrane;MPBVO	O.I.	C.G.	H.G.
16.2	99.5	123.4	At5g53370	835418	PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F)	F:pectinesterase activity;P:cell wall modification;C:cell wall;PBFMO	O.I.	C.G.	H.G.
16.1	99.5	24.0	At5g06610	830549	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
15.8	99.5	136.6	At1g55210	841964	disease resistance response	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
15.8	99.5	38.5	At2g33580	817923	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein	F:kinase activity;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
15.8	99.5	13.9	At4g23320	828431	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
15.7	99.5	33.3	At3g12830	820465	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
15.6	99.5	25.4	At4g23880	828487	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPF	O.I.	C.G.	H.G.
15.5	99.5	53.4	At3g27110	822330	peptidase M48 family protein	F:metalloendopeptidase activity;P:proteolysis;C:chloroplast, membrane;BOAPF	O.I.	C.G.	H.G.
15.5	99.5	18.0	At1g69720	843308	ho3 (HEME OXYGENASE 3)	Encodes a member (HO3) of the heme oxygenase family.	O.I.	C.G.	H.G.
15.4	99.5	66.7	At5g38990	833891	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
15.4	99.5	17.7	At1g42705	3767274	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
15.2	99.4	58.6	At4g37310	829886	CYP81H1	member of CYP81H	O.I.	C.G.	H.G.
15.1	99.4	24.1	At2g23200	816852	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
14.4	99.4	21.8	At4g18890	827623	brassinosteroid signalling positive regulator-related	F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;POMBF	O.I.	C.G.	H.G.
14.4	99.4	17.9	At1g14260	837987	zinc finger (C3HC4-type RING finger) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV	O.I.	C.G.	H.G.
14.3	99.4	73.3	At2g26190	817159	calmodulin-binding family protein	F:calmodulin binding;P:N-terminal protein myristoylation;C:unknown;PFOB	O.I.	C.G.	H.G.
14.3	99.4	15.7	At2g29090	817457	CYP707A2	Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition.	O.I.	C.G.	H.G.
14.3	99.4	10.7	At3g26320	822236	CYP71B36	putative cytochrome P450	O.I.	C.G.	H.G.
14.2	99.4	73.4	At4g23810	828481	WRKY53	member of WRKY Transcription Factor; Group III	O.I.	C.G.	H.G.
14.1	99.4	35.4	At5g44870	834517	disease resistance protein (TIR-NBS-LRR class), putative	F:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	C.G.	H.G.
13.9	99.4	17.7	At3g24090	821995	glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase	F:sugar binding, transaminase activity, glutamine-fructose-6-phosphate transaminase (isomerizing) activity;P:carbohydrate biosynthetic process, carbohydrate metabolic process, metabolic process;C:cytoplasm;OBMAFPV	O.I.	C.G.	H.G.
13.7	99.4	231.5	At5g55450	835638	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:response to other organism, lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
13.7	99.4	49.3	At1g71330	843474	ATNAP5	member of NAP subfamily	O.I.	C.G.	H.G.
13.6	99.4	72.9	At2g29350	817484	SAG13	senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase	O.I.	C.G.	H.G.
13.6	99.4	24.0	At4g19240	827664	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.5	99.4	68.4	At1g10340	837573	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA	O.I.	C.G.	H.G.
13.5	99.4	41.2	At4g28490	828967	HAE (HAESA)	member of Receptor kinase-like protein family	O.I.	C.G.	H.G.
13.4	99.4	177.1	At5g24530	832524	DMR6 (DOWNY MILDEW RESISTANT 6)	Encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew.	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	-
Assay name	E-MEXP-173-raw-cel-357965452
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-173-raw-cel-357965452 GSE experiment -

GSM ID -

Assay name E-MEXP-173-raw-cel-357965452

GSE experiment -