Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-MEXP-1725-raw-cel-1669614592
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
96.899.991.7At4g36410829793UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)ubiquitin-conjugating enzymeO.I.C.G.H.G.
95.199.970.2At4g27730828887OPT6 (OLIGOPEPTIDE TRANSPORTER 1)oligopeptide transporterO.I.C.G.H.G.
57.899.8317.6At5g62360836357invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
56.499.865.9At4g16563827356aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOO.I.C.G.H.G.
53.599.8200.1At3g23550821934MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAMO.I.C.G.H.G.
51.599.8125.2At5g12050831078unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBO.I.C.G.H.G.
49.599.8154.4At2g27690817315CYP94C1Encodes a CYP94C1. Has highest omega-hydroxylase activity with 9,10-epoxystearic acid, while also metabolized lauric acid (C12:0) and C18 unsaturated fatty acids. Gene expression is induced in response to wounding and jasmonic acid treatment.O.I.C.G.H.G.
48.199.8300.4At2g38240818403oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:response to salt stress;C:unknown;POBFMO.I.C.G.H.G.
41.099.8159.1At1g15010838066unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBO.I.C.G.H.G.
40.199.8156.1At5g02760831234protein phosphatase 2C family protein / PP2C family proteinF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBAVO.I.C.G.H.G.
38.499.842.1At5g46330834676FLS2 (FLAGELLIN-SENSITIVE 2)Encodes a leucine-rich repeat serine/threonine protein kinase that is expressed ubiquitously. FLS2 is involved in MAP kinase signalling relay involved in innate immunity. Essential in the perception of flagellin, a potent elicitor of the defense response. FLS2 is directed for degradation by the bacterial ubiquitin ligase AvrPtoB.O.I.C.G.H.G.
37.799.747.2At5g44260834449zinc finger (CCCH-type) family proteinF:transcription factor activity, nucleic acid binding;P:unknown;C:unknown;MOPFVO.I.C.G.H.G.
37.599.77.1At1g03010839556phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:unknown;PMO.I.C.G.H.G.
37.299.780.6At4g13340826964leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;MBPOFVAO.I.C.G.H.G.
36.199.754.3At4g34770829629auxin-responsive family proteinF:unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
35.299.724.9At2g31010817652protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVAO.I.C.G.H.G.
34.899.784.5At2g34930818058disease resistance family proteinF:protein binding;P:signal transduction, defense response to fungus, defense response;C:cell wall;PMOBFAVO.I.C.G.H.G.
34.699.768.4At5g03730831748CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1)Homologous to the RAF family of serine/threonine protein kinases. Negative regulator in the ethylene signal transduction pathway. Interacts with the putative ethylene receptors ETR1 and ERS. Constitutively expressed.O.I.C.G.H.G.
33.999.727.0At3g05660819733AtRLP33 (Receptor Like Protein 33)F:protein binding, kinase activity;P:signal transduction, defense response;C:chloroplast;PMOBFAVO.I.C.G.H.G.
33.399.7115.3At1g21910838793AP2 domain-containing transcription factor family proteinencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
33.299.742.7At5g23870832452pectinacetylesterase family proteinF:carboxylesterase activity;P:biological_process unknown;C:plant-type cell wall;PMOBO.I.C.G.H.G.
31.499.7360.8At5g44130834436FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR)F:molecular_function unknown;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall;PBOMAO.I.C.G.H.G.
31.299.741.2At2g42280818829basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMO.I.C.G.H.G.
31.099.7134.0At5g07010830592ST2A (SULFOTRANSFERASE 2A)Encodes a sulfotransferase that acts specifically on 11- and 12-hydroxyjasmonic acid. Transcript levels for this enzyme are increased by treatments with jasmonic acid (JA), 12-hydroxyJA, JA-isoleucine, and 12-oxyphytodienoic acid (a JA precursor).O.I.C.G.H.G.
30.699.771.9At4g21410827893protein kinase family proteinF:kinase activity;P:response to abscisic acid stimulus;C:plasma membrane, vacuole;MPOBFVAO.I.C.G.H.G.
29.799.790.7At4g37450829900AGP18 (ARABINOGALACTAN PROTEIN 18)AGP18 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP17 and AGP19, other lysine-rich AGPs. It is expressed in young leaves, shoots, roots and flowers.O.I.C.G.H.G.
29.799.752.8At1g61380842432SD1-29 (S-DOMAIN-1 29)F:carbohydrate binding, protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
29.499.7133.5At5g15410831393DND1 (DEFENSE NO DEATH 1)'defense, no death' gene (DND1) encodes a mutated cyclic nucleotide-gated cation channel; Same as CNGC2 (article ID 229): Cyclic nucleotide gated channel, activated by cAMP, conducts K+ and other monovalent cations but excludes Na+, does not contain the GYG amino acid sequence found in other channels with this conductivity profile. Conducts Ca2+ into cells which is linked to the generation of NO and the NO signaling pathway involved in the innate immune response to pathogens.O.I.C.G.H.G.
28.899.7262.9At1g19380838521unknown proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
27.599.769.4At1g21830838785unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
27.199.751.4At5g60860836207AtRABA1f (Arabidopsis Rab GTPase homolog A1f)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBAVO.I.C.G.H.G.
26.799.744.9At3g59900825160ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE)Encodes ARGOS (Auxin-Regulated Gene Involved in Organ Size). Inducible by auxin. Involved in lateral organ size control. Transgenic plants expressing sense or antisense ARGOS cDNA display enlarged or reduced aerial organs, respectively. The alteration in organ size is attributable mainly to changes in cell number and the duration of organ growth.O.I.C.G.H.G.
26.699.764.0At2g33570817922unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOAO.I.C.G.H.G.
25.999.7144.5At2g44080819014ARL (ARGOS-LIKE)Encodes ARL, a gene similar to ARGOS involved in cell expansion-dependent organ growth. Upregulated by brassinosteroid. Acts downstream of BRI1.O.I.C.G.H.G.
25.699.744.9At5g28300832914trihelix DNA-binding protein, putativeF:transcription factor activity;P:regulation of transcription;C:chloroplast;OMPFBVAO.I.C.G.H.G.
25.499.6169.2At5g05440830427unknown proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
25.199.635.5At4g23200828419protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:vacuole;MPOBFVAO.I.C.G.H.G.
24.899.6185.1At4g22470828342protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
24.799.6259.3At1g76160843948sks5 (SKU5 Similar 5)F:oxidoreductase activity, copper ion binding;P:unknown;C:apoplast, cell wall, plant-type cell wall;FBPMOAO.I.C.G.H.G.
23.999.632.2At1g18400838421BEE1 (BR Enhanced Expression 1)F:transcription factor activity;P:regulation of transcription;C:nucleus;PFMOO.I.C.G.H.G.
23.799.660.0At5g24030832468SLAH3 (SLAC1 HOMOLOGUE 3)Encodes a protein with ten predicted transmembrane helices. The SLAH3 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement an slac1-2 mutant suggesting that it performs a similar function. SLAH3:GFP localizes to the plasma membrane.O.I.C.G.H.G.
23.599.640.7At4g32800829416AP2 domain-containing transcription factor TINY, putativeencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
22.999.685.8At4g25260828629invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:shade avoidance;C:endomembrane system;PO.I.C.G.H.G.
22.499.659.8At5g62280836349unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.099.638.1At5g57760835884unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.799.636.1At3g23150821891ETR2 (ethylene response 2)Involved in ethylene perception in ArabidopsisO.I.C.G.H.G.
21.499.6158.0At1g80130844353bindingF:binding;P:response to oxidative stress;C:membrane;BPOMFAVO.I.C.G.H.G.
21.499.6109.7At2g38290818409ATAMT2 (AMMONIUM TRANSPORTER 2)encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively.O.I.C.G.H.G.
20.499.695.2At5g47370834784HAT2homeobox-leucine zipper genes induced by auxin, but not by other phytohormones. Plays opposite roles in the shoot and root tissues in regulating auxin-mediated morphogenesis.O.I.C.G.H.G.
20.199.672.8At4g00330828125CRCK2high overall homology to CRCK1O.I.C.G.H.G.
20.199.624.4At4g27970828910SLAH2 (SLAC1 HOMOLOGUE 2)Encodes a protein with ten predicted transmembrane helices. The SLAH2 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. But, it is not expressed in guard cells and cannot complement a slac1-2 mutant suggesting that it performs a different function. SLAH2:GFP localizes to the plasma membrane.O.I.C.G.H.G.
19.199.659.9At1g18570838438MYB51 (MYB DOMAIN PROTEIN 51)Encodes a member of the R2R3-MYB transcription family. Involved in indole glucosinolate biosynthesis.O.I.C.G.H.G.
19.099.5113.7At1g43160840915RAP2.6 (related to AP2 6)encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family (RAP2.6). The protein contains one AP2 domain. There are 7 members in this subfamily.O.I.C.G.H.G.
18.699.552.1At3g53800824547armadillo/beta-catenin repeat family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
18.599.534.2At4g21400827892protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
17.899.5102.3At1g14920838057GAI (GIBBERELLIC ACID INSENSITIVE)Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. GAI may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA.O.I.C.G.H.G.
17.899.568.7At3g63380825513calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)F:calmodulin binding, calcium-transporting ATPase activity;P:calcium ion transport, cation transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAVO.I.C.G.H.G.
17.799.5225.5At3g50480824212HR4 (HOMOLOG OF RPW8 4)Homolog of RPW8O.I.C.G.H.G.
17.799.561.3At4g39840830143unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMFBPVAO.I.C.G.H.G.
17.699.544.6At3g62150825388PGP21 (P-GLYCOPROTEIN 21)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPVO.I.C.G.H.G.
17.199.5123.6At2g19800816499MIOX2 (MYO-INOSITOL OXYGENASE 2)Encodes a myo-inositol oxygenase family gene.O.I.C.G.H.G.
16.899.569.2At5g12170831090--O.I.C.G.H.G.
16.899.535.9At4g03410827932peroxisomal membrane protein-relatedF:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast;MFPOO.I.C.G.H.G.
16.699.5331.3At4g08950826473EXO (EXORDIUM)F:molecular_function unknown;P:response to brassinosteroid stimulus;C:cell wall, plant-type cell wall;PBO.I.C.G.H.G.
16.499.571.6At1g10585837600transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
16.399.518.2At1g17230838294ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
16.099.528.6At5g06570830545hydrolaseF:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
15.899.569.0At2g41230818722unknown proteinF:unknown;P:biological_process unknown;C:unknown;PMO.I.C.G.H.G.
15.899.525.9At1g77640844099AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
15.799.527.0At4g30340829157ATDGK7 (Diacylglycerol kinase 7)encodes a diacylglycerol kinase. Applying a specific diacylglycerol kinase inhibitor to the growth media resulted in reduced root elongation and plant growth. Gene is expressed throughout the plant but is strongest in flowers and young seedlings.O.I.C.G.H.G.
15.499.587.3At2g40940818693ERS1 (ETHYLENE RESPONSE SENSOR 1)Ethylene receptor, subfamily 1. Has histidine kinase activity.O.I.C.G.H.G.
15.399.424.2At1g27910839684PUB45 (PLANT U-BOX 45)Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.O.I.C.G.H.G.
15.299.4167.3At5g54960835587PDC2 (pyruvate decarboxylase-2)pyruvate decarboxylase-2O.I.C.G.H.G.
15.299.4116.5At1g25560839143TEM1 (TEMPRANILLO 1)Encodes a member of the RAV transcription factor family that contains AP2 and B3 binding domains. Involved in the regulation of flowering under long days. Loss of function results in early flowering. Overexpression causes late flowering and repression of expression of FT.O.I.C.G.H.G.
15.199.449.3At1g35350840424-F:unknown;P:unknown;C:integral to membrane;FMPOBO.I.C.G.H.G.
15.199.436.7At5g58900836007myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOFO.I.C.G.H.G.
14.699.4337.1At1g08930837414ERD6 (EARLY RESPONSE TO DEHYDRATION 6)encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold.O.I.C.G.H.G.
14.399.444.8At2g18910816407hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBOVO.I.C.G.H.G.
14.399.418.1At4g31000829227calmodulin-binding proteinF:calmodulin binding;P:unknown;C:unknown;PMO.I.C.G.H.G.
13.899.4204.0At2g17840816293ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7)Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis.O.I.C.G.H.G.
13.899.4118.8At5g25350832607EBF2 (EIN3-BINDING F BOX PROTEIN 2)Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway.O.I.C.G.H.G.
13.899.4108.1At3g19680821505unknown proteinF:unknown;P:unknown;C:plasma membrane;OPMBFO.I.C.G.H.G.
13.699.447.8At2g41700818768ATPase, coupled to transmembrane movement of substances / amino acid transmembrane transporterF:ATPase activity, coupled to transmembrane movement of substances, amino acid transmembrane transporter activity;P:unknown;C:plasma membrane;BOMAFPVO.I.C.G.H.G.
13.499.437.9At2g30990817650unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBFO.I.C.G.H.G.
13.399.4290.6At2g41410818739calmodulin, putativeF:calcium ion binding;P:unknown;C:plasma membrane;MPFOBO.I.C.G.H.G.
13.299.4138.8At3g52500824415aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:cell wall, membrane, plant-type cell wall;PMFOO.I.C.G.H.G.
13.299.4138.7At4g2187082827626.5 kDa class P-related heat shock protein (HSP26.5-P)F:unknown;P:response to heat;C:cellular_component unknown;PBOFAO.I.C.G.H.G.
13.299.4126.2At3g19130821447ATRBP47B (RNA-binding protein 47B)F:RNA binding;P:unknown;C:unknown;MOPFBAVO.I.C.G.H.G.
13.299.437.2At1g14910838056epsin N-terminal homology (ENTH) domain-containing proteinF:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:N-terminal protein myristoylation, clathrin coat assembly;C:clathrin coat, mitochondrion;MPFOBAVO.I.C.G.H.G.
13.199.414.2At5g07000830591ST2B (SULFOTRANSFERASE 2B)Encodes a member of the sulfotransferase family of proteins. Although it has 85% amino acid identity with ST2A (At5g07010), this protein is not able to transfer a sulfate group to 11- or 12-hydroxyjasmonic acid in vitro. It may be able to act on structurally related jasmonates.O.I.C.G.H.G.
13.099.462.4At1g22570838863proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;BPOMFO.I.C.G.H.G.
13.099.413.7At2g02020814733proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;BPMOFO.I.C.G.H.G.
12.999.3235.4At1g52200841650unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:plasma membrane;PFMOO.I.C.G.H.G.
12.999.368.3At3g54140824581PTR1 (PEPTIDE TRANSPORTER 1)Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. GFP-tagged PTR1 localizes to the plasma membrane and has 8 to 11 predicted transmembrane domains. PTR1 is expressed in a number of different vascular tissues throughout the plant based on promoter:GUS expression analysis. ptr1 mutants have a lower dry weight than wild type plants when both are grown with Pro-Ala or Ala-Ala dipeptides as their nitrogen source, suggesting that PTR1 plays a role in dipeptide uptake in the roots. Furthermore N content of ptr1 mutants is lower than that of wild type plants when grown with Pro-Ala or a mixture of dipeptides as nitrogen sourceO.I.C.G.H.G.
12.899.3143.1At2g32240817784-F:molecular_function unknown;P:response to cadmium ion;C:plasma membrane;MOBFPAVO.I.C.G.H.G.
12.899.313.7At2g22810816812ACS4 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4)key regulatory enzyme in the biosynthesis of the plant hormone ethylene. ACS4 is specifically induced by indoleacetic acid (IAA).O.I.C.G.H.G.
12.499.359.4At1g23030838911armadillo/beta-catenin repeat family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;PMOFBVO.I.C.G.H.G.
12.399.3119.8At1g68560843185XYL1 (ALPHA-XYLOSIDASE 1)Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.O.I.C.G.H.G.
12.399.330.4At3g19850821522phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:endomembrane system;PO.I.C.G.H.G.
12.199.3273.3At3g16530820901legume lectin family proteinLectin like protein whose expression is induced upon treatment with chitin oligomers.O.I.C.G.H.G.



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