Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-MEXP-148-raw-cel-350529179
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
152.599.978.5At2g18550816370HB-2 (HOMEOBOX-2)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.O.I.C.G.H.G.
86.799.912.2At1g31040839990unknown proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
75.599.9179.8At2g18050816317HIS1-3 (HISTONE H1-3)encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.O.I.C.G.H.G.
53.999.854.3At4g28703828989-F:molecular_function unknown;P:unknown;C:cellular_component unknown;BOPO.I.C.G.H.G.
52.399.885.1At4g35190829672unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAMO.I.C.G.H.G.
50.799.863.6At3g18960821429transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
49.899.837.1At1g71340843475glycerophosphoryl diester phosphodiesterase family proteinF:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:cellular_component unknown;BOAMPFVO.I.C.G.H.G.
44.399.815.7At5g05550830438transcription factorF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMOO.I.C.G.H.G.
40.299.814.8At5g49120834971senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OPFMBVO.I.C.G.H.G.
37.099.729.5At5g40910834092disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAVO.I.C.G.H.G.
36.899.783.9At5g60910836212AGL8 (agamous-like 8)MADS box gene negatively regulated by APETALA1O.I.C.G.H.G.
36.499.731.9At2g03710814898SEP4 (SEPALLATA 4)This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity.O.I.C.G.H.G.
36.399.759.3At2g47880819400glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBOO.I.C.G.H.G.
35.799.7207.7At2g19810816500zinc finger (CCCH-type) family proteinF:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;POMO.I.C.G.H.G.
34.399.741.5At2g45660819174AGL20 (AGAMOUS-LIKE 20)Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA.O.I.C.G.H.G.
33.399.741.2At1g54730841914sugar transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport;C:membrane;PMFBO.I.C.G.H.G.
33.099.7127.7At1g44760841040universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:unknown;PMOO.I.C.G.H.G.
33.099.747.9At3g57470824914peptidase M16 family protein / insulinase family proteinF:metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding;P:proteolysis;C:cellular_component unknown;BOMFPO.I.C.G.H.G.
32.699.773.6At4g22360828331SWIB complex BAF60b domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PFMBOO.I.C.G.H.G.
31.899.728.0At3g27870822407haloacid dehalogenase-like hydrolase family proteinF:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, ATP biosynthetic process, phospholipid transport;C:integral to membrane, membrane;MBOFPAVO.I.C.G.H.G.
31.699.7130.7At1g69490843282NAP (NAC-like, activated by AP3/PI)Encodes a member of the NAC transcription factor gene family. It is expressed in floral primordia and upregulated by AP3 and PI. Its expression is associated with leaf senescence.O.I.C.G.H.G.
30.499.736.5At3g49160824077pyruvate kinase family proteinExpression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.O.I.C.G.H.G.
29.799.774.9At1g53160841749SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4)Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.O.I.C.G.H.G.
29.499.759.5At1g26150839156PERK10 (PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 10)F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MBOFPVAO.I.C.G.H.G.
28.999.765.5At5g22290832289anac089 (Arabidopsis NAC domain containing protein 89)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
28.699.733.1At3g53310824499transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MBOFPVO.I.C.G.H.G.
27.799.715.3At4g36740829827ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.O.I.C.G.H.G.
26.599.763.9At4g00238825892DNA-binding storekeeper protein-relatedF:unknown;P:biological_process unknown;C:nucleolus;OMPFBVO.I.C.G.H.G.
26.299.7180.3At2g25900817131ATCTHputative Cys3His zinc finger protein (ATCTH) mRNA, completeO.I.C.G.H.G.
25.099.643.3At2g46270819235GBF3 (G-BOX BINDING FACTOR 3)encodes a bZIP G-box binding protein whose expression is induced by ABA. It has been shown to bind to Adh that contains the G-box and is induced by cold and water deprivation. GBF3 has been shown to be expressed mostly in the root and dark-grown leaves. GBF3 can act as homodimers and as heterodimers with GFB1, GBF2 and GBF4. In addition, GBF3s DNA binding activity is enhanced by GIP1, GPRI1 and GPRI2.O.I.C.G.H.G.
24.899.617.9At4g19510827692disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMOBFAO.I.C.G.H.G.
24.699.6124.0At5g02020831782unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
24.599.616.7At2g31150817671ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanismF:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding;P:ATP biosynthetic process;C:membrane;OMBFPVAO.I.C.G.H.G.
24.299.626.3At2g01930814724BPC1 (BASIC PENTACYSTEINE1)BASIC PENTACYSTEINE1 (BPC1) is a regulator of the homeotic Arabidopsis thaliana gene SEEDSTICK (STK), which controls ovule identity. BPC1 induces conformational changes by cooperative binding to purine-rich elements present in the STK regulatory sequence. STK is upregulated in bpc1 mutant.O.I.C.G.H.G.
24.199.614.2At3g17010820957transcriptional factor B3 family proteintranscriptional factor B3 family protein, contains Pfam profile PF02362: B3 DNA binding domain. Activated by AGAMOUS ina a cal-1, ap1-1 background. Expressed in stamen primordia, the placental region of developing carpels and the ovary.O.I.C.G.H.G.
22.999.632.8At3g54720824637AMP1 (ALTERED MERISTEM PROGRAM 1)Encodes glutamate carboxypeptidase. Various alleles show-increased cotyledon number and rate of leaf initiation, show transformation of leaves to cotyledons, altered flowering time and photomorphogenesis and an increased level of cytokinin biosynthesis. Involved in ethylene enhanced hypocotyl elongation in the light. Strong genetic interaction between TGH and AMP1.O.I.C.G.H.G.
22.699.625.9At3g11580820331DNA-binding protein, putativeF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
22.299.632.9At5g04790830358unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
22.099.687.5At1g65370842848meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
21.799.665.3At1g22640838870MYB3 (MYB DOMAIN PROTEIN 3)MYB-type transcription factor (MYB3) that represses phenylpropanoid biosynthesis gene expressionO.I.C.G.H.G.
21.699.6271.0At4g14270827068-Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins.O.I.C.G.H.G.
21.599.630.6At1g808003767731-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
21.599.619.6At5g01880831691zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.
21.599.611.5At3g26920822308-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO.I.C.G.H.G.
21.199.640.5At2g35750818147unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
21.099.651.7At3g57300824897INO80 (INO80 ORTHOLOG)Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family. Functions as a positive regulator of DNA homologous recombination (HR). In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type. Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration. INO80 was also shown to regulate a subset of the Arabidopsis transcriptome.O.I.C.G.H.G.
20.999.618.4At3g48710824032-F:unknown;P:unknown;C:unknown;MOBFPVAO.I.C.G.H.G.
20.899.621.0At5g03840831683TFL1 (TERMINAL FLOWER 1)Controls inflorescence meristem identity. Involved in the floral initiation process. Ortholog of the Antirrhinum gene CENTRORADIALIS (CEN). Involved in protein trafficking to the protein storage vacuole.O.I.C.G.H.G.
20.699.679.1At2g46550819267unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMO.I.C.G.H.G.
20.699.638.9At5g25475832622DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
20.699.615.1At3g06160819790transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POO.I.C.G.H.G.
20.599.612.5At1g56260842079unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
20.399.619.4At2g21470816686SAE2 (SUMO-ACTIVATING ENZYME 2)Encodes one of the two subunits of the SUMO activation enzyme required during sumolation. Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein.O.I.C.G.H.G.
20.199.693.3At3g61890825362ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Loss of function mutant has abnormally shaped leaves and stems.O.I.C.G.H.G.
20.199.620.6At1g62540842551FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2)belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolatesO.I.C.G.H.G.
19.999.672.2At2g02570814787nucleic acid bindingF:nucleic acid binding;P:unknown;C:unknown;MFOPBO.I.C.G.H.G.
19.799.619.0At4g01460828089basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMOO.I.C.G.H.G.
19.599.642.1At5g45760834615transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:heterotrimeric G-protein complex;MBFOPAO.I.C.G.H.G.
19.599.622.4At2g17550816262unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFABO.I.C.G.H.G.
19.399.647.3At1g60160842311potassium transporter family proteinF:potassium ion transmembrane transporter activity;P:potassium ion transport;C:chloroplast;BPOFAVO.I.C.G.H.G.
19.199.690.6At1g20650838654ATP binding / protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
19.199.619.8At2g35310818098transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
18.999.530.1At2g39580818543unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMPOFO.I.C.G.H.G.
18.999.518.8At5g16180831476CRS1 (ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1)F:RNA splicing factor activity, transesterification mechanism;P:Group II intron splicing;C:unknown;POMBAFO.I.C.G.H.G.
18.899.533.5At2g25590817098agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
18.899.56.5At3g08880820036unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMPFO.I.C.G.H.G.
18.599.540.6At1g17550838330HAB2Protein Phosphatase 2CO.I.C.G.H.G.
18.599.530.9At2g16480--O.I.C.G.H.G.
18.299.550.5At1g07530837267SCL14 (SCARECROW-LIKE 14)Encodes a member of the GRAS family of transcription factors. The protein interacts with the TGA2 transcription factor and affects the transcription of stress-responsive genes. The protein is found in the nucleus and is also exported to the cytoplasm.O.I.C.G.H.G.
18.099.523.3At5g51910835266TCP family transcription factor, putativeF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
17.899.524.4At5g07180830609ERL2 (ERECTA-LIKE 2)Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments.O.I.C.G.H.G.
17.799.518.3At4g01840828091KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5)Encodes AtTPK5, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK5 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo.O.I.C.G.H.G.
17.099.538.7At3g57170824884N-acetylglucosaminyl transferase component family protein / Gpi1 family proteinF:transferase activity, phosphatidylinositol N-acetylglucosaminyltransferase activity;P:GPI anchor biosynthetic process;C:endomembrane system, integral to membrane;MFOPO.I.C.G.H.G.
16.799.511.5At3g51110824275crooked neck protein, putative / cell cycle protein, putativeF:binding;P:RNA processing;C:intracellular;MFOPBAO.I.C.G.H.G.
16.399.546.3At2g19350816452unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO.I.C.G.H.G.
16.299.531.8At3g45900823733unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBAO.I.C.G.H.G.
16.199.546.0At3g44630823589disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation, defense response;C:intrinsic to membrane;PMBOFAVO.I.C.G.H.G.
16.099.531.5At5g06265830514hyaluronan mediated motility receptor-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
15.899.588.8At3g47295823883unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
15.899.532.6At3g19290821463ABF4 (ABRE BINDING FACTOR 4)bZIP transcription factor with specificity for abscisic acid-responsive elements (ABRE). Mediate ABA-dependent stress responses.O.I.C.G.H.G.
15.599.543.0At1g13350837895protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:nucleus, cytoplasm;MOFPBVAO.I.C.G.H.G.
15.499.560.1At1g72050843536TFIIIA (TRANSCRIPTION FACTOR IIIA)Encodes a transcriptional factor TFIIIA required for transcription of 5S rRNA gene. 5S rRNA is the smallest constituent of the ribosome. Work on one of the gene models AT1G72050.2 showed that it encodes a protein with nine Cys(2)-His(2)-type zinc fingers, a characteristic feature of TFIIIA proteins. AT1G72050.2 also contains a 23 amino acid spacer between fingers 1 and 2, a 66 amino acid spacer between fingers 4 and 5, and a 50 amino acid non-finger C-terminal tail. in vitro assay demonstrated that AT1g72050.2 binds to 5S rDNA and efficiently stimulates the transcription of 5S rRNA. AT1g72050.2 also binds to 5S rRNA in vitro. AT1g72050.2 is located at several nuclear foci including the nucleolus and is absent from the cytoplasm.O.I.C.G.H.G.
15.499.540.1At5g55120835603VTC5 (VITAMIN C DEFECTIVE 5)Encodes a GDP-L-galactose phosphorylase, with similar biochemical properties as VTC2.O.I.C.G.H.G.
15.299.471.0At5g24670832539catalytic/ hydrolase/ zinc ion bindingF:hydrolase activity, catalytic activity, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;BOFMPO.I.C.G.H.G.
15.299.444.1At1g63420842648-F:unknown;P:biological_process unknown;C:unknown;MPFBOVO.I.C.G.H.G.
15.299.441.3At1g01040839574DCL1 (DICER-LIKE 1)Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs.O.I.C.G.H.G.
15.199.47.8At2g35950818168EDA12 (embryo sac development arrest 12)F:molecular_function unknown;P:megagametogenesis;C:unknown;PO.I.C.G.H.G.
15.099.420.3At1g75190843856unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOFVPBAO.I.C.G.H.G.
15.099.418.7At4g02430828027pre-mRNA splicing factor, putative / SR1 protein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAO.I.C.G.H.G.
14.999.439.6At4g31430829270unknown proteinF:unknown;P:unknown;C:plasma membrane;OMPFBVO.I.C.G.H.G.
14.999.422.7At1g10570837598OTS2 (OVERLY TOLERANT TO SALT 2)Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave the C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. sYFP:OTS2 protein accumulates in nuclei in a punctate pattern. Double mutant analysis with ULP1D/OTS1 indicates that these genes are involved in salt stress responses and flowering time regulation.O.I.C.G.H.G.
14.899.464.3At4g33210829457F-box family protein (FBL15)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPOFBVO.I.C.G.H.G.
14.899.442.5At4g16860827395RPP4 (recognition of peronospora parasitica 4)Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing.O.I.C.G.H.G.
14.899.424.4At5g15310831383ATMYB16 (MYB DOMAIN PROTEIN 16)Member of the R2R3 factor gene family.O.I.C.G.H.G.
14.799.425.3At5g12480831123CPK7 (calmodulin-domain protein kinase 7)calmodulin-domain protein kinase CDPK isoform 7 (CPK7)O.I.C.G.H.G.
14.799.416.5At1g62030842498DC1 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
14.799.410.5At5g26980832756SYP41 (SYNTAXIN OF PLANTS 41)member of SYP4 Gene FamilyO.I.C.G.H.G.
14.699.413.4At1g52520841683FRS6 (FAR1-related sequence 6)F:zinc ion binding;P:response to red or far red light;C:cellular_component unknown;PFMOO.I.C.G.H.G.
14.699.413.2At1g77080844042--O.I.C.G.H.G.
14.599.421.5At3g08020819993protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFBO.I.C.G.H.G.



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