Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-MEXP-1468-raw-cel-1591138985
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
159.599.9193.2At1g49570841381peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBO.I.C.G.H.G.
121.699.981.6At2g34020817963calcium ion bindingF:calcium ion binding;P:biological_process unknown;C:unknown;POMBFO.I.C.G.H.G.
87.499.971.8At4g11610826766C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.C.G.H.G.
68.799.934.0At4g15330827199CYP705A1a member of the cytochrome P450 familyO.I.C.G.H.G.
67.799.960.0At4g35720829724unknown proteinF:unknown;P:unknown;C:unknown;POO.I.C.G.H.G.
65.699.8118.3At3g60530825224zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOMO.I.C.G.H.G.
60.399.860.6At5g57240835830ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C)F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOPO.I.C.G.H.G.
54.599.819.8At2g46990819313IAA20 (INDOLE-3-ACETIC ACID INDUCIBLE 20)Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA20 lacks the conserved degron (domain II) found in many family members, and IAA20 fusion proteins are stable in Arabidopsis seedlings. IAA20 transcripts are induced by auxin treatment, and overexpression of IAA20 leads to defects in gravitropism, root development, root meristem maintenance, etiolation, and cotyledon vascular development.O.I.C.G.H.G.
53.199.820.0At3g15370820776ATEXPA12 (ARABIDOPSIS THALIANA EXPANSIN 12)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
50.199.8152.7At5g19110832031extracellular dermal glycoprotein-related / EDGP-relatedF:aspartic-type endopeptidase activity;P:proteolysis, N-terminal protein myristoylation;C:endomembrane system;PO.I.C.G.H.G.
49.699.8181.0At1g64660842774ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE)Encodes a functional methionine gamma-lyase, a cytosolic enzyme catalyzes the degradation of methionine into methanethiol, alpha-ketobutyrate and ammonia. The catabolism of excess methionine is important to methionine homeostasis.O.I.C.G.H.G.
49.599.856.3At5g53660835447AtGRF7 (GROWTH-REGULATING FACTOR 7)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.O.I.C.G.H.G.
49.099.8434.1At4g14130827051XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)xyloglucan endotransglycosylase-related protein (XTR7)O.I.C.G.H.G.
48.799.8130.7At2g39980818586transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO.I.C.G.H.G.
47.099.8147.7At5g54190835507PORAlight-dependent NADPH:protochlorophyllide oxidoreductase AO.I.C.G.H.G.
46.899.835.3At4g15340827200ATPEN1 (ARABIDOPSIS THALIANA PENTACYCLIC TRITERPENE SYNTHASE 1)Encodes a protein that catalyzes the production of the tricyclic triterpene arabidiol when expressed in yeast.O.I.C.G.H.G.
46.499.8130.5At5g02260831736ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
45.399.816.1At1g35625840462peptidase/ protein binding / zinc ion bindingF:peptidase activity, protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFBVO.I.C.G.H.G.
45.199.8123.9At5g44440834471FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAMO.I.C.G.H.G.
43.699.883.5At5g62280836349unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
41.499.840.0At5g67060836841HEC1 (HECATE 1)F:transcription factor activity;P:transmitting tissue development, carpel formation, regulation of transcription;C:nucleus;PMBOFAO.I.C.G.H.G.
41.399.891.9At5g23840832449MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
41.399.873.8At5g63650836485SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.O.I.C.G.H.G.
40.299.848.7At5g44260834449zinc finger (CCCH-type) family proteinF:transcription factor activity, nucleic acid binding;P:unknown;C:unknown;MOPFVO.I.C.G.H.G.
37.299.7199.4At1g10070837543ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.O.I.C.G.H.G.
36.899.727.0At4g37580829913HLS1 (HOOKLESS 1)involved in apical hook development. putative N-acetyltransferaseO.I.C.G.H.G.
35.999.751.0At4g13290826959CYP71A19putative cytochrome P450O.I.C.G.H.G.
35.899.735.2At2g36080818181DNA-binding protein, putativeEncodes a plant-specific B3 DNA-binding domain transcription factor. Has transcription repressor activity.O.I.C.G.H.G.
34.599.7131.2At1g67910843119unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
33.199.7121.9At4g11190826721disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
33.099.723.3At1g203903766766transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
32.099.7105.8At2g38750818457ANNAT4 (ANNEXIN ARABIDOPSIS 4)Annexins are a family of calcium dependent membrane binding proteins though to be involved in Golgi mediated secretion. This is one of four annexins identified in Arabidopsis.O.I.C.G.H.G.
30.299.77.6At1g65890842901AAE12 (ACYL ACTIVATING ENZYME 12)F:catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
29.499.770.3At1g76410843974ATL8F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
29.199.7122.1At4g22610828357protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
29.099.731.9At1g72070843538DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMPFAVO.I.C.G.H.G.
29.099.727.2At3g59710825140short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAO.I.C.G.H.G.
28.599.7156.9At3g59930825163-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
28.299.7379.0At3g47340823888ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.O.I.C.G.H.G.
27.699.762.0At3g60070825177-F:molecular_function unknown;P:biological_process unknown;C:membrane;BOMPFO.I.C.G.H.G.
27.699.711.0At2g22200816754AP2 domain-containing transcription factorencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.O.I.C.G.H.G.
27.099.767.1At1g76640843997calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOBVO.I.C.G.H.G.
26.799.750.2At1g34630840367unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
26.399.773.5At2g34930818058disease resistance family proteinF:protein binding;P:signal transduction, defense response to fungus, defense response;C:cell wall;PMOBFAVO.I.C.G.H.G.
26.099.7127.5At5g02020831782unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
25.999.7145.3At5g06370830525NC domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBMOO.I.C.G.H.G.
24.599.693.3At4g28270828942zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPFOVO.I.C.G.H.G.
24.599.635.6At2g38760818458ANNAT3 (ANNEXIN ARABIDOPSIS 3)Annexins are calcium binding proteins that are localized in the cytoplasm. When cytosolic Ca2+ increases, they relocate to the plasma membrane.O.I.C.G.H.G.
24.099.6255.2At1g28330839729DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)dormancy-associated protein (DRM1)O.I.C.G.H.G.
23.899.655.8At2g39705818554RTFL8 (ROTUNDIFOLIA LIKE 8)F:molecular_function unknown;P:shoot development;C:chloroplast;PO.I.C.G.H.G.
23.799.626.9At2g45050819112zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMOVO.I.C.G.H.G.
23.599.6129.5At5g22500832311FAR1 (FATTY ACID REDUCTASE 1)F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:chloroplast;MBFOPO.I.C.G.H.G.
23.499.629.9At4g39070830062zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:response to chitin, regulation of transcription;C:intracellular;POMO.I.C.G.H.G.
23.099.6137.8At2g47780819390rubber elongation factor (REF) protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.699.6199.0At5g45280834564pectinacetylesterase, putativeF:carboxylesterase activity;P:biological_process unknown;C:cell wall;PMOBAO.I.C.G.H.G.
22.599.637.6At4g13860827020glycine-rich RNA-binding protein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAO.I.C.G.H.G.
21.699.6242.9At3g109852745879SAG20 (SENESCENCE ASSOCIATED GENE 20)A senescence-associated gene whose expression is induced in response to treatment with Nep1, a fungal protein that causes necrosis.O.I.C.G.H.G.
21.699.640.4At1g62760842574invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:unknown;MOFBPVAO.I.C.G.H.G.
21.599.6250.6At4g21830828271methionine sulfoxide reductase domain-containing protein / SeIR domain-containing proteinF:peptide-methionine-(S)-S-oxide reductase activity;P:response to singlet oxygen;C:cellular_component unknown;OBMPFAVO.I.C.G.H.G.
21.499.691.7At5g42600834267MRN1 (MARNERAL SYNTHASE)Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral.O.I.C.G.H.G.
21.299.636.4At1g09530837479PIF3 (PHYTOCHROME INTERACTING FACTOR 3)Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.O.I.C.G.H.G.
21.199.637.3At5g57760835884unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
20.799.6172.6At5g23830832448MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
20.499.638.5At1g77380844074AAP3Amino acid permease which transports basic amino acids.O.I.C.G.H.G.
20.399.6144.0At5g25350832607EBF2 (EIN3-BINDING F BOX PROTEIN 2)Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway.O.I.C.G.H.G.
20.199.610.4At4g10240826615zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMO.I.C.G.H.G.
18.899.5226.4At4g32460829381-F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PBO.I.C.G.H.G.
18.799.5151.1At1g09570837483PHYA (PHYTOCHROME A)Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.O.I.C.G.H.G.
18.699.5100.7At5g48010834852THAS1 (THALIANOL SYNTHASE 1)Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism.O.I.C.G.H.G.
18.599.544.5At5g04770830355CAT6 (CATIONIC AMINO ACID TRANSPORTER 6)Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. Expressed in sink tissues. Induced during infestation of roots by the plant parasitic root-knot nematode, Meloidogyne incognita. Localized in the plasma membrane.O.I.C.G.H.G.
18.299.5110.3At2g37640818341EXP3member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
17.899.5122.8At5g01210831901transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO.I.C.G.H.G.
17.499.5313.7At4g22212828313-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
17.499.5135.5At4g33150829452lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymeF:unknown;P:unknown;C:unknown;OBFMPAO.I.C.G.H.G.
17.299.5311.0At5g65020836626ANNAT2 (Annexin Arabidopsis 2)Annexins are calcium binding proteins that are localized in the cytoplasm. When cytosolic Ca2+ increases, they relocate to the plasma membrane. They may be involved in the Golgi-mediated secretion of polysaccharides.O.I.C.G.H.G.
17.299.513.6At1g01390837790UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOFO.I.C.G.H.G.
16.999.5145.5At2g38400818421AGT3 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 3)alanine:glyoxylate aminotransferase 2 homolog (AGT3) mRNA,O.I.C.G.H.G.
16.899.598.1At3g28290822455AT14AEncodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed.O.I.C.G.H.G.
16.799.578.5At1g52100841640jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PFOO.I.C.G.H.G.
16.699.579.5At4g29270829048acid phosphatase class B family proteinF:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOO.I.C.G.H.G.
16.699.525.3At4g01410828166harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
16.499.527.1At2g42870818887PAR1 (PHY RAPIDLY REGULATED 1)Encodes PHYTOCHROME RAPIDLY REGULATED1 (PAR1), an atypical basic helix-loop-helix (bHLP) protein. Closely related to PAR2 (At3g58850). Up regulated after simulated shade perception. Acts in the nucleus to control plant development and as a negative regulator of shade avoidance response. Functions as transcriptional repressor of auxin-responsive genes SAUR15 (AT4G38850) and SAUR68 (AT1G29510).O.I.C.G.H.G.
16.399.597.1At3g03640821201BGLU25 (BETA GLUCOSIDASE 25)Encodes beta-glucosidase (GLUC).O.I.C.G.H.G.
16.099.567.6At1g78660844202gamma-glutamyl hydrolase, putative / gamma-Glu-X carboxypeptidase, putative / conjugase, putativeThe Arabidopsis protein AtGGH1 is a gamma-glutamyl hydrolase cleaving pentaglutamates to yield di- and triglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole.O.I.C.G.H.G.
15.999.515.6At4g29140829035MATE efflux protein-relatedF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
15.899.516.8At2g35170818084MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPFO.I.C.G.H.G.
15.799.5135.6At5g26260832695meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFO.I.C.G.H.G.
15.799.561.3At1g62770842576invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
15.799.546.1At2g29660817516zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:anchored to membrane;PFOO.I.C.G.H.G.
15.799.519.8At1g04310839549ERS2 (ETHYLENE RESPONSE SENSOR 2)encodes an ethylene receptor related to bacterial two-component histidine kinases.O.I.C.G.H.G.
15.699.572.6At3g29575822619AFP3 (ABI FIVE BINDING PROTEIN 3)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
15.599.5139.6At5g54080835494HGO (HOMOGENTISATE 1,2-DIOXYGENASE)homogentisate 1,2-dioxygenaseO.I.C.G.H.G.
15.599.532.8At4g19230827663CYP707A1Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. CYP707A1 appears to play an important role in determining the ABA levels in dry seeds. Gene involved in postgermination growth. Overexpression of CYP707A1 leads to a decrease in ABA levels and a reduction in after-ripening period to break dormancy.O.I.C.G.H.G.
15.499.5159.3At3g29250822580copper ion binding / oxidoreductaseF:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAVO.I.C.G.H.G.
15.499.577.2At1g75540843890STH2 (SALT TOLERANCE HOMOLOG2)F:transcription factor activity, zinc ion binding;P:unknown;C:intracellular;POMFO.I.C.G.H.G.
15.199.4104.1At1g14890838054enzyme inhibitor/ pectinesterase/ pectinesterase inhibitorF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
15.099.4252.4At4g21850828273methionine sulfoxide reductase domain-containing protein / SeIR domain-containing proteinF:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;OBMPFAVO.I.C.G.H.G.
15.099.440.2At3g23880821971F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:nucleus;POO.I.C.G.H.G.
14.899.436.0At4g37330829888CYP81D4member of CYP81DO.I.C.G.H.G.
14.799.4120.6At4g19160827654unknown proteinF:unknown;P:biological_process unknown;C:unknown;BPOMO.I.C.G.H.G.



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