CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-1468-raw-cel-1591138787

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
107.5 99.9 259.2 At5g02020 831782 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
72.1 99.9 34.5 At1g20390 3766766 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
58.3 99.8 45.3 At1g72070 843538 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMPFAV O.I. C.G. H.G.
54.8 99.8 147.8 At1g67810 843107 SUFE2 (SULFUR E 2) Encodes a protein capable of stimulating the cysteine desulfurase activity of CpNifS (AT1G08490) in vitro. SufE2:GFP localizes to the chloroplasts where it is likely to play a role in iron-sulfur cluster assembly. Transcript levels for this gene are high in the pollen relative to other organs based on RT-PCR analysis. O.I. C.G. H.G.
52.6 99.8 55.7 At4g11610 826766 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
46.9 99.8 30.5 At4g37580 829913 HLS1 (HOOKLESS 1) involved in apical hook development. putative N-acetyltransferase O.I. C.G. H.G.
45.3 99.8 417.4 At4g14130 827051 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) xyloglucan endotransglycosylase-related protein (XTR7) O.I. C.G. H.G.
42.5 99.8 263.1 At2g43050 818907 ATPMEPCRD F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
41.7 99.8 144.2 At1g67910 843119 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
39.7 99.8 127.7 At5g50760 835148 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
38.1 99.8 70.9 At5g63650 836485 SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5) encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. O.I. C.G. H.G.
37.9 99.8 49.3 At5g53660 835447 AtGRF7 (GROWTH-REGULATING FACTOR 7) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower. O.I. C.G. H.G.
37.4 99.7 319.8 At3g10985 2745879 SAG20 (SENESCENCE ASSOCIATED GENE 20) A senescence-associated gene whose expression is induced in response to treatment with Nep1, a fungal protein that causes necrosis. O.I. C.G. H.G.
36.8 99.7 111.9 At5g44440 834471 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM O.I. C.G. H.G.
36.3 99.7 108.7 At4g23700 828470 ATCHX17 (CATION/H+ EXCHANGER 17) member of Putative Na+/H+ antiporter family O.I. C.G. H.G.
35.0 99.7 308.2 At1g28330 839729 DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1) dormancy-associated protein (DRM1) O.I. C.G. H.G.
32.6 99.7 19.7 At1g70270 843363 ATP binding / DNA binding F:DNA binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
31.3 99.7 203.9 At3g60140 825184 DIN2 (DARK INDUCIBLE 2) Encodes a protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. O.I. C.G. H.G.
31.1 99.7 13.3 At1g62900 842591 O-methyltransferase, putative F:O-methyltransferase activity;P:unknown;C:cytosol;PBFOM O.I. C.G. H.G.
30.6 99.7 27.9 At1g55240 841967 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MP O.I. C.G. H.G.
30.4 99.7 85.3 At1g62770 842576 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
29.7 99.7 117.2 At5g15290 831381 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
29.1 99.7 55.7 At5g04770 830355 CAT6 (CATIONIC AMINO ACID TRANSPORTER 6) Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. Expressed in sink tissues. Induced during infestation of roots by the plant parasitic root-knot nematode, Meloidogyne incognita. Localized in the plasma membrane. O.I. C.G. H.G.
27.8 99.7 195.1 At5g66170 836749 - F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOA O.I. C.G. H.G.
27.5 99.7 171.4 At1g10070 837543 ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. O.I. C.G. H.G.
26.2 99.7 103.3 At4g16515 827350 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
25.8 99.7 37.6 At2g34020 817963 calcium ion binding F:calcium ion binding;P:biological_process unknown;C:unknown;POMBF O.I. C.G. H.G.
25.7 99.7 115.1 At5g04120 830290 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
25.4 99.6 260.0 At5g65390 836664 AGP7 F:unknown;P:unknown;C:anchored to membrane;BMOPFVA O.I. C.G. H.G.
25.0 99.6 42.3 At5g49700 835033 DNA-binding protein-related F:unknown;P:biological_process unknown;C:unknown;PMBF O.I. C.G. H.G.
24.6 99.6 133.1 At2g34500 818013 CYP710A1 (cytochrome P450, family 710, subfamily A, polypeptide 1) Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze in the presence of NADPH the conversion of β-sitosterol to stigmasterol, but not that of 24-epi-campesterol to brassicasterol (unlike CYP710A2). O.I. C.G. H.G.
24.4 99.6 131.9 At5g22500 832311 FAR1 (FATTY ACID REDUCTASE 1) F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:chloroplast;MBFOP O.I. C.G. H.G.
24.1 99.6 180.5 At1g73120 843643 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:unknown;P O.I. C.G. H.G.
23.7 99.6 95.6 At3g48970 824058 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBO O.I. C.G. H.G.
23.4 99.6 171.6 At5g54080 835494 HGO (HOMOGENTISATE 1,2-DIOXYGENASE) homogentisate 1,2-dioxygenase O.I. C.G. H.G.
23.4 99.6 70.7 At3g60530 825224 zinc finger (GATA type) family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM O.I. C.G. H.G.
23.4 99.6 50.3 At3g23880 821971 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:nucleus;PO O.I. C.G. H.G.
23.3 99.6 251.9 At4g32460 829381 - F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB O.I. C.G. H.G.
23.1 99.6 255.8 At2g01450 814673 ATMPK17 member of MAP Kinase O.I. C.G. H.G.
23.0 99.6 123.3 At1g64660 842774 ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE) Encodes a functional methionine gamma-lyase, a cytosolic enzyme catalyzes the degradation of methionine into methanethiol, alpha-ketobutyrate and ammonia. The catabolism of excess methionine is important to methionine homeostasis. O.I. C.G. H.G.
22.6 99.6 16.1 At3g29370 822596 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
21.7 99.6 91.1 At2g21060 816641 ATGRP2B (GLYCINE-RICH PROTEIN 2B) glycine-rich protein (AtGRP2b) O.I. C.G. H.G.
21.7 99.6 80.6 At3g21090 821661 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV O.I. C.G. H.G.
21.6 99.6 121.5 At1g73220 843656 AtOCT1 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER1) F:carnitine transporter activity, transporter activity, carbohydrate transmembrane transporter activity;P:unknown;C:plasma membrane, membrane;BMFPOA O.I. C.G. H.G.
20.9 99.6 233.6 At5g10430 830907 AGP4 (ARABINOGALACTAN PROTEIN 4) Encodes arabinogalactan-protein (AGP4). O.I. C.G. H.G.
20.9 99.6 85.5 At2g39980 818586 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
20.8 99.6 208.2 At5g18650 831983 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFA O.I. C.G. H.G.
20.5 99.6 235.6 At3g26510 822258 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein F:unknown;P:biological_process unknown;C:unknown;POFMBV O.I. C.G. H.G.
20.4 99.6 139.1 At4g27260 828834 WES1 encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. O.I. C.G. H.G.
20.1 99.6 146.6 At3g28740 822506 CYP81D1 Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions. O.I. C.G. H.G.
20.1 99.6 53.0 At3g60070 825177 - F:molecular_function unknown;P:biological_process unknown;C:membrane;BOMPF O.I. C.G. H.G.
20.0 99.6 34.9 At5g57240 835830 ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C) F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOP O.I. C.G. H.G.
19.9 99.6 357.2 At2g37130 818289 peroxidase 21 (PER21) (P21) (PRXR5) F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus;C:endomembrane system;PFO O.I. C.G. H.G.
19.8 99.6 118.2 At1g70710 843408 ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1) endo-1,4-beta-glucanase. Involved in cell elongation. O.I. C.G. H.G.
19.8 99.6 100.7 At5g04470 830326 SIM (SIAMESE) Encodes a novel nuclear 14-kD protein containing a cyclin binding motif and a motif found in ICK/KRP cell cycle inhibitor proteins. It is required for coordinating cell division and cell differentiation during the development of Arabidopsis trichomes, playing a key role in the mitosis-to-endoreduplication transition. It interacts with D-type cyclins in vivo. O.I. C.G. H.G.
19.8 99.6 15.6 At2g19660 816485 DC1 domain-containing protein F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
19.7 99.6 20.9 At5g66080 836740 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV O.I. C.G. H.G.
19.5 99.6 298.8 At5g09440 830803 EXL4 (EXORDIUM LIKE 4) F:molecular_function unknown;P:biological_process unknown;C:membrane;PB O.I. C.G. H.G.
19.5 99.6 142.9 At4g38580 830015 ATFP6 (FARNESYLATED PROTEIN 6) putative farnesylated protein (At4g38580) mRNA, complete O.I. C.G. H.G.
19.2 99.6 170.5 At5g11090 830977 serine-rich protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFB O.I. C.G. H.G.
19.1 99.6 185.4 At2g37750 818352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
19.0 99.5 49.9 At2g39705 818554 RTFL8 (ROTUNDIFOLIA LIKE 8) F:molecular_function unknown;P:shoot development;C:chloroplast;P O.I. C.G. H.G.
18.9 99.5 28.4 At1g34110 840310 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
18.6 99.5 232.4 At4g28240 828939 wound-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
18.6 99.5 33.1 At5g44260 834449 zinc finger (CCCH-type) family protein F:transcription factor activity, nucleic acid binding;P:unknown;C:unknown;MOPFV O.I. C.G. H.G.
18.3 99.5 78.8 At2g44010 819006 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
18.3 99.5 33.5 At4g25580 828663 stress-responsive protein-related F:unknown;P:unknown;C:cellular_component unknown;PMOFBV O.I. C.G. H.G.
18.0 99.5 46.2 At5g18060 831310 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
17.9 99.5 215.6 At1g58030 842170 CAT2 (CATIONIC AMINO ACID TRANSPORTER 2) Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Localized to the tonoplast. O.I. C.G. H.G.
17.6 99.5 180.0 At1g66180 842933 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFOM O.I. C.G. H.G.
17.6 99.5 61.6 At4g20070 827752 ATAAH (Arabidopsis thaliana Allantoate Amidohydrolase) The gene encoding Arabidopsis thaliana Allantoate Amidohydrolase (AtAAH)which catalyzes the allantoate deiminase reaction (EC 3.5.3.9)is expressed in all parts of the plant being consistent with a function in purine turnover in Arabidopsis. O.I. C.G. H.G.
17.3 99.5 48.4 At2g29660 817516 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:anchored to membrane;PFO O.I. C.G. H.G.
17.2 99.5 381.0 At3g21720 821726 ICL (ISOCITRATE LYASE) Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL). O.I. C.G. H.G.
17.2 99.5 55.7 At4g33750 - - O.I. C.G. H.G.
17.2 99.5 43.8 At3g20340 821578 - Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. O.I. C.G. H.G.
17.0 99.5 25.6 At4g01410 828166 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
16.9 99.5 168.5 At1g32170 840109 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) xyloglucan endotransglycosylase-related protein (XTR4) O.I. C.G. H.G.
16.8 99.5 227.3 At2g17500 816256 auxin efflux carrier family protein F:auxin:hydrogen symporter activity;P:auxin polar transport;C:endomembrane system, integral to membrane;PFOBA O.I. C.G. H.G.
16.8 99.5 116.8 At5g06370 830525 NC domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBMO O.I. C.G. H.G.
16.8 99.5 34.2 At5g02580 831095 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
16.7 99.5 157.3 At3g52060 824369 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB O.I. C.G. H.G.
16.7 99.5 142.8 At1g09570 837483 PHYA (PHYTOCHROME A) Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation. O.I. C.G. H.G.
16.6 99.5 59.0 At3g50660 824229 DWF4 (DWARF 4) Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate. O.I. C.G. H.G.
16.5 99.5 206.3 At5g25280 832600 serine-rich protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFB O.I. C.G. H.G.
16.5 99.5 112.6 At1g58180 842185 carbonic anhydrase family protein / carbonate dehydratase family protein F:carbonate dehydratase activity, zinc ion binding;P:carbon utilization;C:mitochondrion;BOPFMA O.I. C.G. H.G.
16.4 99.5 42.0 At2g46740 819287 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BOFPMA O.I. C.G. H.G.
16.1 99.5 79.7 At4g28040 828919 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOAM O.I. C.G. H.G.
15.9 99.5 169.2 At1g28660 839766 lipase, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
15.7 99.5 74.7 At4g28270 828942 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPFOV O.I. C.G. H.G.
15.4 99.5 181.1 At2g43535 818955 trypsin inhibitor, putative Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
15.4 99.5 147.0 At2g17710 816280 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
15.1 99.4 371.7 At5g64260 836547 EXL2 (EXORDIUM LIKE 2) F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;PB O.I. C.G. H.G.
15.1 99.4 29.8 At4g36930 829847 SPT (SPATULA) Encodes a transcription factor of the bHLH protein family. Mutants have abnormal, unfused carpels and reduced seed dormancy. O.I. C.G. H.G.
14.9 99.4 182.0 At5g53250 835406 AGP22 (ARABINOGALACTAN PROTEIN 22) F:unknown;P:unknown;C:anchored to membrane;P O.I. C.G. H.G.
14.9 99.4 52.7 At5g23050 832369 AAE17 (ACYL-ACTIVATING ENZYME 17) F:catalytic activity, ligase activity;P:metabolic process;C:cellular_component unknown;BOMFAP O.I. C.G. H.G.
14.8 99.4 126.6 At1g03090 838362 MCCA MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion. O.I. C.G. H.G.
14.7 99.4 61.4 At5g44920 834522 Toll-Interleukin-Resistance (TIR) domain-containing protein F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBO O.I. C.G. H.G.
14.7 99.4 31.9 At4g23870 828486 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
14.6 99.4 27.8 At4g35720 829724 unknown protein F:unknown;P:unknown;C:unknown;PO O.I. C.G. H.G.
14.5 99.4 138.1 At3g13720 820581 PRA8 F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;POMF O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
107.5	99.9	259.2	At5g02020	831782	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
72.1	99.9	34.5	At1g20390	3766766	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
58.3	99.8	45.3	At1g72070	843538	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMPFAV	O.I.	C.G.	H.G.
54.8	99.8	147.8	At1g67810	843107	SUFE2 (SULFUR E 2)	Encodes a protein capable of stimulating the cysteine desulfurase activity of CpNifS (AT1G08490) in vitro. SufE2:GFP localizes to the chloroplasts where it is likely to play a role in iron-sulfur cluster assembly. Transcript levels for this gene are high in the pollen relative to other organs based on RT-PCR analysis.	O.I.	C.G.	H.G.
52.6	99.8	55.7	At4g11610	826766	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
46.9	99.8	30.5	At4g37580	829913	HLS1 (HOOKLESS 1)	involved in apical hook development. putative N-acetyltransferase	O.I.	C.G.	H.G.
45.3	99.8	417.4	At4g14130	827051	XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)	xyloglucan endotransglycosylase-related protein (XTR7)	O.I.	C.G.	H.G.
42.5	99.8	263.1	At2g43050	818907	ATPMEPCRD	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
41.7	99.8	144.2	At1g67910	843119	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
39.7	99.8	127.7	At5g50760	835148	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
38.1	99.8	70.9	At5g63650	836485	SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)	encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.	O.I.	C.G.	H.G.
37.9	99.8	49.3	At5g53660	835447	AtGRF7 (GROWTH-REGULATING FACTOR 7)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.	O.I.	C.G.	H.G.
37.4	99.7	319.8	At3g10985	2745879	SAG20 (SENESCENCE ASSOCIATED GENE 20)	A senescence-associated gene whose expression is induced in response to treatment with Nep1, a fungal protein that causes necrosis.	O.I.	C.G.	H.G.
36.8	99.7	111.9	At5g44440	834471	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM	O.I.	C.G.	H.G.
36.3	99.7	108.7	At4g23700	828470	ATCHX17 (CATION/H+ EXCHANGER 17)	member of Putative Na+/H+ antiporter family	O.I.	C.G.	H.G.
35.0	99.7	308.2	At1g28330	839729	DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)	dormancy-associated protein (DRM1)	O.I.	C.G.	H.G.
32.6	99.7	19.7	At1g70270	843363	ATP binding / DNA binding	F:DNA binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
31.3	99.7	203.9	At3g60140	825184	DIN2 (DARK INDUCIBLE 2)	Encodes a protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.	O.I.	C.G.	H.G.
31.1	99.7	13.3	At1g62900	842591	O-methyltransferase, putative	F:O-methyltransferase activity;P:unknown;C:cytosol;PBFOM	O.I.	C.G.	H.G.
30.6	99.7	27.9	At1g55240	841967	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MP	O.I.	C.G.	H.G.
30.4	99.7	85.3	At1g62770	842576	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
29.7	99.7	117.2	At5g15290	831381	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
29.1	99.7	55.7	At5g04770	830355	CAT6 (CATIONIC AMINO ACID TRANSPORTER 6)	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. Expressed in sink tissues. Induced during infestation of roots by the plant parasitic root-knot nematode, Meloidogyne incognita. Localized in the plasma membrane.	O.I.	C.G.	H.G.
27.8	99.7	195.1	At5g66170	836749	-	F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOA	O.I.	C.G.	H.G.
27.5	99.7	171.4	At1g10070	837543	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)	Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.	O.I.	C.G.	H.G.
26.2	99.7	103.3	At4g16515	827350	unknown protein	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
25.8	99.7	37.6	At2g34020	817963	calcium ion binding	F:calcium ion binding;P:biological_process unknown;C:unknown;POMBF	O.I.	C.G.	H.G.
25.7	99.7	115.1	At5g04120	830290	phosphoglycerate/bisphosphoglycerate mutase family protein	F:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
25.4	99.6	260.0	At5g65390	836664	AGP7	F:unknown;P:unknown;C:anchored to membrane;BMOPFVA	O.I.	C.G.	H.G.
25.0	99.6	42.3	At5g49700	835033	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:unknown;PMBF	O.I.	C.G.	H.G.
24.6	99.6	133.1	At2g34500	818013	CYP710A1 (cytochrome P450, family 710, subfamily A, polypeptide 1)	Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze in the presence of NADPH the conversion of β-sitosterol to stigmasterol, but not that of 24-epi-campesterol to brassicasterol (unlike CYP710A2).	O.I.	C.G.	H.G.
24.4	99.6	131.9	At5g22500	832311	FAR1 (FATTY ACID REDUCTASE 1)	F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:chloroplast;MBFOP	O.I.	C.G.	H.G.
24.1	99.6	180.5	At1g73120	843643	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:unknown;P	O.I.	C.G.	H.G.
23.7	99.6	95.6	At3g48970	824058	copper-binding family protein	F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBO	O.I.	C.G.	H.G.
23.4	99.6	171.6	At5g54080	835494	HGO (HOMOGENTISATE 1,2-DIOXYGENASE)	homogentisate 1,2-dioxygenase	O.I.	C.G.	H.G.
23.4	99.6	70.7	At3g60530	825224	zinc finger (GATA type) family protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM	O.I.	C.G.	H.G.
23.4	99.6	50.3	At3g23880	821971	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:nucleus;PO	O.I.	C.G.	H.G.
23.3	99.6	251.9	At4g32460	829381	-	F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB	O.I.	C.G.	H.G.
23.1	99.6	255.8	At2g01450	814673	ATMPK17	member of MAP Kinase	O.I.	C.G.	H.G.
23.0	99.6	123.3	At1g64660	842774	ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE)	Encodes a functional methionine gamma-lyase, a cytosolic enzyme catalyzes the degradation of methionine into methanethiol, alpha-ketobutyrate and ammonia. The catabolism of excess methionine is important to methionine homeostasis.	O.I.	C.G.	H.G.
22.6	99.6	16.1	At3g29370	822596	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.7	99.6	91.1	At2g21060	816641	ATGRP2B (GLYCINE-RICH PROTEIN 2B)	glycine-rich protein (AtGRP2b)	O.I.	C.G.	H.G.
21.7	99.6	80.6	At3g21090	821661	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV	O.I.	C.G.	H.G.
21.6	99.6	121.5	At1g73220	843656	AtOCT1 (Arabidopsis thaliana ORGANIC CATION/CARNITINE TRANSPORTER1)	F:carnitine transporter activity, transporter activity, carbohydrate transmembrane transporter activity;P:unknown;C:plasma membrane, membrane;BMFPOA	O.I.	C.G.	H.G.
20.9	99.6	233.6	At5g10430	830907	AGP4 (ARABINOGALACTAN PROTEIN 4)	Encodes arabinogalactan-protein (AGP4).	O.I.	C.G.	H.G.
20.9	99.6	85.5	At2g39980	818586	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
20.8	99.6	208.2	At5g18650	831983	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFA	O.I.	C.G.	H.G.
20.5	99.6	235.6	At3g26510	822258	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	F:unknown;P:biological_process unknown;C:unknown;POFMBV	O.I.	C.G.	H.G.
20.4	99.6	139.1	At4g27260	828834	WES1	encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.	O.I.	C.G.	H.G.
20.1	99.6	146.6	At3g28740	822506	CYP81D1	Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions.	O.I.	C.G.	H.G.
20.1	99.6	53.0	At3g60070	825177	-	F:molecular_function unknown;P:biological_process unknown;C:membrane;BOMPF	O.I.	C.G.	H.G.
20.0	99.6	34.9	At5g57240	835830	ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C)	F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
19.9	99.6	357.2	At2g37130	818289	peroxidase 21 (PER21) (P21) (PRXR5)	F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus;C:endomembrane system;PFO	O.I.	C.G.	H.G.
19.8	99.6	118.2	At1g70710	843408	ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1)	endo-1,4-beta-glucanase. Involved in cell elongation.	O.I.	C.G.	H.G.
19.8	99.6	100.7	At5g04470	830326	SIM (SIAMESE)	Encodes a novel nuclear 14-kD protein containing a cyclin binding motif and a motif found in ICK/KRP cell cycle inhibitor proteins. It is required for coordinating cell division and cell differentiation during the development of Arabidopsis trichomes, playing a key role in the mitosis-to-endoreduplication transition. It interacts with D-type cyclins in vivo.	O.I.	C.G.	H.G.
19.8	99.6	15.6	At2g19660	816485	DC1 domain-containing protein	F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
19.7	99.6	20.9	At5g66080	836740	protein phosphatase 2C family protein / PP2C family protein	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV	O.I.	C.G.	H.G.
19.5	99.6	298.8	At5g09440	830803	EXL4 (EXORDIUM LIKE 4)	F:molecular_function unknown;P:biological_process unknown;C:membrane;PB	O.I.	C.G.	H.G.
19.5	99.6	142.9	At4g38580	830015	ATFP6 (FARNESYLATED PROTEIN 6)	putative farnesylated protein (At4g38580) mRNA, complete	O.I.	C.G.	H.G.
19.2	99.6	170.5	At5g11090	830977	serine-rich protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFB	O.I.	C.G.	H.G.
19.1	99.6	185.4	At2g37750	818352	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
19.0	99.5	49.9	At2g39705	818554	RTFL8 (ROTUNDIFOLIA LIKE 8)	F:molecular_function unknown;P:shoot development;C:chloroplast;P	O.I.	C.G.	H.G.
18.9	99.5	28.4	At1g34110	840310	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
18.6	99.5	232.4	At4g28240	828939	wound-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
18.6	99.5	33.1	At5g44260	834449	zinc finger (CCCH-type) family protein	F:transcription factor activity, nucleic acid binding;P:unknown;C:unknown;MOPFV	O.I.	C.G.	H.G.
18.3	99.5	78.8	At2g44010	819006	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
18.3	99.5	33.5	At4g25580	828663	stress-responsive protein-related	F:unknown;P:unknown;C:cellular_component unknown;PMOFBV	O.I.	C.G.	H.G.
18.0	99.5	46.2	At5g18060	831310	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
17.9	99.5	215.6	At1g58030	842170	CAT2 (CATIONIC AMINO ACID TRANSPORTER 2)	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Localized to the tonoplast.	O.I.	C.G.	H.G.
17.6	99.5	180.0	At1g66180	842933	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFOM	O.I.	C.G.	H.G.
17.6	99.5	61.6	At4g20070	827752	ATAAH (Arabidopsis thaliana Allantoate Amidohydrolase)	The gene encoding Arabidopsis thaliana Allantoate Amidohydrolase (AtAAH)which catalyzes the allantoate deiminase reaction (EC 3.5.3.9)is expressed in all parts of the plant being consistent with a function in purine turnover in Arabidopsis.	O.I.	C.G.	H.G.
17.3	99.5	48.4	At2g29660	817516	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:anchored to membrane;PFO	O.I.	C.G.	H.G.
17.2	99.5	381.0	At3g21720	821726	ICL (ISOCITRATE LYASE)	Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL).	O.I.	C.G.	H.G.
17.2	99.5	55.7	At4g33750		-	-	O.I.	C.G.	H.G.
17.2	99.5	43.8	At3g20340	821578	-	Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.	O.I.	C.G.	H.G.
17.0	99.5	25.6	At4g01410	828166	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
16.9	99.5	168.5	At1g32170	840109	XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4)	xyloglucan endotransglycosylase-related protein (XTR4)	O.I.	C.G.	H.G.
16.8	99.5	227.3	At2g17500	816256	auxin efflux carrier family protein	F:auxin:hydrogen symporter activity;P:auxin polar transport;C:endomembrane system, integral to membrane;PFOBA	O.I.	C.G.	H.G.
16.8	99.5	116.8	At5g06370	830525	NC domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBMO	O.I.	C.G.	H.G.
16.8	99.5	34.2	At5g02580	831095	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
16.7	99.5	157.3	At3g52060	824369	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB	O.I.	C.G.	H.G.
16.7	99.5	142.8	At1g09570	837483	PHYA (PHYTOCHROME A)	Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.	O.I.	C.G.	H.G.
16.6	99.5	59.0	At3g50660	824229	DWF4 (DWARF 4)	Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate.	O.I.	C.G.	H.G.
16.5	99.5	206.3	At5g25280	832600	serine-rich protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFB	O.I.	C.G.	H.G.
16.5	99.5	112.6	At1g58180	842185	carbonic anhydrase family protein / carbonate dehydratase family protein	F:carbonate dehydratase activity, zinc ion binding;P:carbon utilization;C:mitochondrion;BOPFMA	O.I.	C.G.	H.G.
16.4	99.5	42.0	At2g46740	819287	FAD-binding domain-containing protein	F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BOFPMA	O.I.	C.G.	H.G.
16.1	99.5	79.7	At4g28040	828919	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;PBOAM	O.I.	C.G.	H.G.
15.9	99.5	169.2	At1g28660	839766	lipase, putative	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
15.7	99.5	74.7	At4g28270	828942	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPFOV	O.I.	C.G.	H.G.
15.4	99.5	181.1	At2g43535	818955	trypsin inhibitor, putative	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
15.4	99.5	147.0	At2g17710	816280	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
15.1	99.4	371.7	At5g64260	836547	EXL2 (EXORDIUM LIKE 2)	F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;PB	O.I.	C.G.	H.G.
15.1	99.4	29.8	At4g36930	829847	SPT (SPATULA)	Encodes a transcription factor of the bHLH protein family. Mutants have abnormal, unfused carpels and reduced seed dormancy.	O.I.	C.G.	H.G.
14.9	99.4	182.0	At5g53250	835406	AGP22 (ARABINOGALACTAN PROTEIN 22)	F:unknown;P:unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
14.9	99.4	52.7	At5g23050	832369	AAE17 (ACYL-ACTIVATING ENZYME 17)	F:catalytic activity, ligase activity;P:metabolic process;C:cellular_component unknown;BOMFAP	O.I.	C.G.	H.G.
14.8	99.4	126.6	At1g03090	838362	MCCA	MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion.	O.I.	C.G.	H.G.
14.7	99.4	61.4	At5g44920	834522	Toll-Interleukin-Resistance (TIR) domain-containing protein	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBO	O.I.	C.G.	H.G.
14.7	99.4	31.9	At4g23870	828486	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.6	99.4	27.8	At4g35720	829724	unknown protein	F:unknown;P:unknown;C:unknown;PO	O.I.	C.G.	H.G.
14.5	99.4	138.1	At3g13720	820581	PRA8	F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;POMF	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-MEXP-1468-raw-cel-1591138787
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-1468-raw-cel-1591138787 GSE experiment -

GSM ID -

Assay name E-MEXP-1468-raw-cel-1591138787

GSE experiment -