Microarray experiments to specifically-expressed genes

GSM ID -
Assay name E-MEXP-1454-raw-cel-1585858509
GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
52.199.8589.1At5g49730835036ATFRO6 (FERRIC REDUCTION OXIDASE 6)Encodes a plasma membrane-located ferric chelate reductase. Its mRNA is expressed in green aerial tissues (shoot, flower and cotyledon) in a light- and cell differentiation-specific manner.O.I.C.G.H.G.
46.699.848.8At2g15020815991unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
35.799.792.8At1g20070838596unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
33.699.7158.5At5g06530830541ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:plasma membrane;BOMFAPVO.I.C.G.H.G.
27.799.724.9At4g38850830040SAUR15 (SMALL AUXIN UPREGULATED 15)mRNA is rapidly induced by auxin and is very short-lived. Has been used as a reporter gene in studying auxin mutants.O.I.C.G.H.G.
25.599.7146.1At5g63800836500MUM2 (MUCILAGE-MODIFIED 2)Involved in mucilage formation. Mutants form columella and outer cell wall architecture of the mucilage cells resembles wild-type. However, mum2 seeds completely lack seed coat mucilage. This mutation appears to represent a later step in the development of this cell-type. Encodes a beta-galactosidase involved in seed coat mucilage biosynthesis. Member of Glycoside Hydrolase Family 35O.I.C.G.H.G.
24.799.6469.3At1g67865843114unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
24.399.658.4At1g53870841824unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.999.6230.0At4g19170827655NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4)chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenaseO.I.C.G.H.G.
21.799.67.1At4g044103769846transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
21.699.622.9At1g29450839821auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
21.499.695.2At5g64770836598unknown proteinF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
21.399.6301.0At1g73600843694methyltransferase/ phosphoethanolamine N-methyltransferaseF:methyltransferase activity, phosphoethanolamine N-methyltransferase activity;P:metabolic process;C:unknown;BOFAPMVO.I.C.G.H.G.
20.899.622.9At5g28030832873cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putativeF:pyridoxal phosphate binding, cysteine synthase activity, catalytic activity;P:cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process;C:unknown;BOFPMAO.I.C.G.H.G.
20.299.649.2At2g32870817848meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
19.499.655.5At5g37300833704WSD1Encodes a bifunctional enzyme, wax ester synthase (WS) and diacylglycerol acyltransferase (DGAT). In vitro assay indicated a ratio of 10.9 between its WS and DGAT activities. Both mutant and in vivo expression/analysis in yeast studies indicated a role in wax biosynthesis.O.I.C.G.H.G.
19.399.6146.1At5g24150832480SQP1squalene monooxygenase gene homologO.I.C.G.H.G.
18.299.5137.3At1g55960842047-F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOO.I.C.G.H.G.
17.799.543.6At1g13650837926-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
17.299.532.8At4g16890827397SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1)Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.O.I.C.G.H.G.
17.199.569.3At5g45820834622CIPK20 (CBL-INTERACTING PROTEIN KINASE 20)Encodes a CBL-interacting serine/threonine protein kinase comprised of an N-terminal kinase catalytic domain similar to SNF1/AMPK and a unique C-terminal regulatory domain.O.I.C.G.H.G.
17.099.527.3At4g168703770172transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
16.899.553.2At5g59080836025unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:chloroplast;PO.I.C.G.H.G.
16.199.5189.4At5g35970833589DNA-binding protein, putativeF:DNA binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BMOFPAO.I.C.G.H.G.
16.199.543.1At5g62430836364CDF1 (CYCLING DOF FACTOR 1)Dof-type zinc finger domain-containing protein, similar to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Represses expression of Constans (CO), a circadian regulator of flowering time. Interacts with LKP2 and FKF1. Expression oscillates under constant light conditions. Mainly expressed in the vasculature of cotyledons, leaves and hypocotyls, but also in stomata. Localized to the nucleus and acts as a repressor of CONSTANS through binding to the Dof binding sites in the CO promoter. Protein gets degraded by FKF1 in the afternoon.O.I.C.G.H.G.
15.999.584.2At2g32160817775-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOPO.I.C.G.H.G.
15.899.5405.0At5g59320836051LTP3 (LIPID TRANSFER PROTEIN 3)Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
15.799.520.2At5g67520836888adenylylsulfate kinase, putativeF:kinase activity, transferase activity, transferring phosphorus-containing groups, ATP binding;P:sulfate assimilation;C:chloroplast;BOMFPAVO.I.C.G.H.G.
15.699.528.6At5g07690830662ATMYB29 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 29)Encodes a putative transcription factor (MYB29).O.I.C.G.H.G.
15.499.58.6At5g10250830889DOT3 (DEFECTIVELY ORGANIZED TRIBUTARIES 3)Encodes a protein with an N-terminal BTB/POZ domain and a C-terminal NPH3 family domain. dot3 mutants have defects in shoot and primary root growth and produce an aberrant parallel venation pattern in juvenile leaves.O.I.C.G.H.G.
14.799.460.0At5g28020832872CYSD2 (CYSTEINE SYNTHASE D2)Encodes cysteine synthase CysD2.O.I.C.G.H.G.
14.599.428.3At1g64380842745AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.O.I.C.G.H.G.
13.899.418.6At4g30110829134HMA2encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zincO.I.C.G.H.G.
13.799.437.5At3g61210825293embryo-abundant protein-relatedF:unknown;P:unknown;C:cellular_component unknown;BPFOMAO.I.C.G.H.G.
13.499.4122.7At1g67860843113unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.399.440.9At5g57340835839unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBAO.I.C.G.H.G.
13.299.4237.5At5g23010832365MAM1 (METHYLTHIOALKYLMALATE SYNTHASE 1)Encodes a methylthioalkylmalate synthase, catalyzes the condensation reactions of the first two rounds of methionine chain elongation in the biosynthesis of methionine-derived glucosinolates.O.I.C.G.H.G.
12.699.3127.4At5g53450835426ORG1 (OBP3-responsive gene 1)F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;PMOFBO.I.C.G.H.G.
12.699.397.8At5g35170833471adenylate kinase family proteinF:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, phosphotransferase activity, phosphate group as acceptor, adenylate kinase activity, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;BOMFPAO.I.C.G.H.G.
12.399.346.8At5g39610833957ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6)Encodes a NAC-domain transcription factor. Positively regulates aging-induced cell death and senescence in leaves. This gene is upregulated in response to salt stress in wildtype as well as NTHK1 transgenic lines although in the latter case the induction was drastically reduced. It was also upregulated by ABA, ACC and NAA treatment, although in the latter two cases, the induction occurred relatively late when compared with NaCl or ABA treatments. Note: this protein (AtNAC6) on occasion has also been referred to as AtNAC2, not to be confused with the AtNAC2 found at locus AT3G15510.O.I.C.G.H.G.
12.199.331.6At5g27950832864kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBO.I.C.G.H.G.
11.999.3239.8At2g47510819364FUM1 (FUMARASE 1)fumarase (FUM1)O.I.C.G.H.G.
11.899.359.4At5g02810831793PRR7 (PSEUDO-RESPONSE REGULATOR 7)PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR7 expression levels.O.I.C.G.H.G.
11.899.344.3At1g73750843710-F:unknown;P:unknown;C:unknown;PBMOO.I.C.G.H.G.
11.799.356.0At3g13062820493-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.C.G.H.G.
11.599.3439.4At5g25610832636RD22responsive to dehydration 22 (RD22) mediated by ABAO.I.C.G.H.G.
11.099.213.0At5g67390836875unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
10.999.2234.2At5g67030836838ABA1 (ABA DEFICIENT 1)Encodes a single copy zeaxanthin epoxidase gene that functions in first step of the biosynthesis of the abiotic stress hormone abscisic acid (ABA). Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do.O.I.C.G.H.G.
10.999.225.4At5g10930830960CIPK5 (CBL-INTERACTING PROTEIN KINASE 5)Encodes CBL-interacting protein kinase 5 (CIPK5).O.I.C.G.H.G.
10.899.268.4At5g44190834442GLK2 (GOLDEN2-LIKE 2)Encodes GLK2, Golden2-like 2, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK1, Golden2-like 1, is encoded by At2g20570. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus.O.I.C.G.H.G.
10.699.24.3At5g25130832584CYP71B12putative cytochrome P450O.I.C.G.H.G.
9.999.1141.6At5g05200830402ABC1 family proteinF:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast, plastoglobule;OBMPFAVO.I.C.G.H.G.
9.699.110.1At4g16880827396disease resistance protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOMO.I.C.G.H.G.
9.599.1107.2At5g57350835841AHA3member of Plasma membrane H+-ATPase familyO.I.C.G.H.G.
9.599.121.8At2g45660819174AGL20 (AGAMOUS-LIKE 20)Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA.O.I.C.G.H.G.
9.499.1112.1At5g55620835656unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
9.499.153.5At5g12050831078unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBO.I.C.G.H.G.
9.499.117.6At5g53200835401TRY (TRIPTYCHON)F:transcription factor activity, DNA binding;P:trichome branching, regulation of transcription;C:unknown;POMO.I.C.G.H.G.
9.499.117.0At2g15080815997AtRLP19 (Receptor Like Protein 19)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
9.399.142.2At5g11060830973KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4)A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root.O.I.C.G.H.G.
8.999.0261.4At5g01750831684unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PFO.I.C.G.H.G.
8.999.0160.3At5g64840836607ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5)member of GCN subfamilyO.I.C.G.H.G.
8.999.013.3At5g17450831611heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedF:metal ion binding;P:metal ion transport;C:unknown;PFBMO.I.C.G.H.G.
8.899.035.8At2g03310814860unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
8.799.0128.4At5g57040835808lactoylglutathione lyase family protein / glyoxalase I family proteinF:catalytic activity;P:metabolic process;C:chloroplast;BPOMO.I.C.G.H.G.
8.799.065.8At1g30250839905unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
8.799.054.5At3g51895824353SULTR3Encodes a sulfate transporter.O.I.C.G.H.G.



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