CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID -

Assay name E-MEXP-1345-raw-cel-1559561229

GSE experiment -

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
503.7 100.0 327.9 At3g06230 819797 ATMKK8 member of MAP Kinase Kinase O.I. C.G. H.G.
494.0 100.0 274.0 At2g38510 818433 MATE efflux protein-related F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAM O.I. C.G. H.G.
445.2 100.0 244.0 At4g16020 3769881 - - O.I. C.G. H.G.
440.8 100.0 298.7 At3g43500 823436 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
434.8 100.0 107.9 At3g57210 824888 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
380.3 100.0 51.9 At5g43220 - - O.I. C.G. H.G.
366.0 100.0 184.1 At3g42990 823355 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
360.1 100.0 138.2 At5g36190 833616 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
325.8 100.0 49.2 At1g23270 838936 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPF O.I. C.G. H.G.
283.0 100.0 54.3 At5g04640 830341 AGL99 (AGAMOUS-LIKE 99) F:transcription factor activity, DNA binding;P:N-terminal protein myristoylation, regulation of transcription, DNA-dependent;C:nucleus;PMFOB O.I. C.G. H.G.
272.4 100.0 123.8 At2g16680 3768265 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
254.1 100.0 357.1 At1g09350 837457 AtGolS3 (Arabidopsis thaliana galactinol synthase 3) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO O.I. C.G. H.G.
251.6 100.0 58.2 At1g37057 3767056 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
202.1 100.0 171.2 At5g29210 833050 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown O.I. C.G. H.G.
201.2 100.0 43.3 At2g19700 816489 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
194.1 100.0 25.1 At1g13760 837936 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
190.5 100.0 42.8 At5g41250 834126 exostosin family protein F:catalytic activity;P:biological_process unknown;C:membrane;POM O.I. C.G. H.G.
185.5 100.0 229.7 At1g51090 841532 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMVF O.I. C.G. H.G.
184.5 100.0 259.7 At1g16850 838256 unknown protein F:molecular_function unknown;P:response to salt stress;C:endomembrane system;P O.I. C.G. H.G.
164.8 100.0 61.8 At5g50880 835160 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
142.9 99.9 22.9 At1g02550 837879 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
141.3 99.9 27.2 At5g41490 834150 F-box family protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
134.4 99.9 34.3 At2g30380 817588 - F:molecular_function unknown;P:biological_process unknown;C:unknown;POMF O.I. C.G. H.G.
128.7 99.9 23.8 At5g53690 835450 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
82.8 99.9 105.4 At1g48100 841228 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBOMVA O.I. C.G. H.G.
71.2 99.9 17.1 At3g16580 820908 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:vacuole;P O.I. C.G. H.G.
69.5 99.9 38.2 At1g46768 841117 RAP2.1 (related to AP2 1) encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.10. O.I. C.G. H.G.
67.7 99.9 97.4 At5g50800 835152 nodulin MtN3 family protein F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMO O.I. C.G. H.G.
67.6 99.9 616.3 At4g17090 827419 CT-BMY (CHLOROPLAST BETA-AMYLASE) Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected). O.I. C.G. H.G.
67.4 99.8 11.0 At4g27190 828827 disease resistance protein (NBS-LRR class), putative F:protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBOFVA O.I. C.G. H.G.
66.1 99.8 128.0 At5g25110 832582 CIPK25 (CBL-INTERACTING PROTEIN KINASE 25) member of AtCIPKs O.I. C.G. H.G.
62.0 99.8 12.7 At5g04630 830340 CYP77A9 member of CYP77A O.I. C.G. H.G.
60.7 99.8 50.9 At4g04140 3769795 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
58.0 99.8 23.5 At5g55680 835662 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMPFVA O.I. C.G. H.G.
54.7 99.8 16.3 At2g41930 818793 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA O.I. C.G. H.G.
51.0 99.8 32.5 At1g32660 840160 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
50.8 99.8 15.3 At2g13250 3767965 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
49.1 99.8 58.8 At1g32860 840180 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;POF O.I. C.G. H.G.
48.2 99.8 67.0 At4g15130 827179 catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase F:choline-phosphate cytidylyltransferase activity, catalytic activity, nucleotidyltransferase activity;P:response to cold, biosynthetic process;C:unknown;OMBFPA O.I. C.G. H.G.
47.1 99.8 201.2 At1g02820 839304 late embryogenesis abundant 3 family protein / LEA3 family protein F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P O.I. C.G. H.G.
46.8 99.8 87.7 At2g21320 816671 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM O.I. C.G. H.G.
44.7 99.8 425.8 At4g14690 827119 ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2) Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis. O.I. C.G. H.G.
38.0 99.8 7.1 At1g42200 3767228 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
35.7 99.7 15.7 At1g65990 842912 type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein F:oxidoreductase activity, antioxidant activity;P:biological_process unknown;C:cellular_component unknown;OBPFMA O.I. C.G. H.G.
35.0 99.7 47.0 At3g09540 820111 pectate lyase family protein F:lyase activity, pectate lyase activity;P:N-terminal protein myristoylation;C:unknown;BPFO O.I. C.G. H.G.
33.8 99.7 54.4 At3g55760 824742 unknown protein F:unknown;P:unknown;C:chloroplast stroma, chloroplast;POMFB O.I. C.G. H.G.
33.5 99.7 120.0 At3g44450 823570 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
33.3 99.7 20.1 At4g34650 829617 SQS2 (SQUALENE SYNTHASE 2) Encodes a protein with similarity to squalene synthase which catalyzes the first committed step in sterol biosynthesis. To date no experimental evidence exists that SQS2 functions as a squalene synthase and some experiments indicate it does not have this function. O.I. C.G. H.G.
31.7 99.7 11.7 At3g32917 3769306 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
31.6 99.7 192.1 At1g80130 844353 binding F:binding;P:response to oxidative stress;C:membrane;BPOMFAV O.I. C.G. H.G.
31.3 99.7 69.3 At1g53035 841737 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
31.0 99.7 26.4 At2g15800 816075 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
30.9 99.7 70.8 At4g17550 827470 transporter-related F:sugar:hydrogen symporter activity;P:carbohydrate transport;C:plasma membrane;BMFOPA O.I. C.G. H.G.
28.9 99.7 539.2 At3g50970 824261 LTI30 (LOW TEMPERATURE-INDUCED 30) Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid. O.I. C.G. H.G.
28.1 99.7 455.5 At5g52310 835307 LTI78 (LOW-TEMPERATURE-INDUCED 78) cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expression O.I. C.G. H.G.
28.0 99.7 24.9 At3g58070 824976 GIS (GLABROUS INFLORESCENCE STEMS) Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile�adult leaf transition and inducing the formation of rosette leaves on inflorescence stems. O.I. C.G. H.G.
27.0 99.7 612.9 At2g42540 818854 COR15A (COLD-REGULATED 15A) A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope. O.I. C.G. H.G.
25.7 99.7 331.1 At2g42530 818853 COR15B (COLD REGULATED 15B) F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF O.I. C.G. H.G.
25.3 99.6 21.0 At4g28150 828930 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
24.9 99.6 60.5 At2g16890 816190 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;P O.I. C.G. H.G.
24.6 99.6 81.4 At5g24470 832518 APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5) Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light. O.I. C.G. H.G.
24.3 99.6 58.1 At2g28550 817403 RAP2.7 (RELATED TO AP2.7) F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent, vegetative to reproductive phase transition;C:nucleus;POBV O.I. C.G. H.G.
24.0 99.6 267.1 At5g20830 832206 SUS1 (SUCROSE SYNTHASE 1) Encodes a protein with sucrose synthase activity (SUS1). O.I. C.G. H.G.
23.7 99.6 134.6 At1g73480 843683 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOPMFVA O.I. C.G. H.G.
23.4 99.6 134.6 At3g24190 822005 ABC1 family protein F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAV O.I. C.G. H.G.
23.4 99.6 66.1 At1g70900 843429 unknown protein F:molecular_function unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
23.3 99.6 57.3 At1g21790 838783 - F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MPO O.I. C.G. H.G.
23.2 99.6 44.0 At5g50100 835074 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OBPM O.I. C.G. H.G.
22.4 99.6 450.1 At2g28900 817439 ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1) Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment. O.I. C.G. H.G.
22.3 99.6 44.0 At3g17130 820970 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
21.8 99.6 71.8 At1g64890 842797 integral membrane transporter family protein F:transporter activity;P:transport;C:membrane;BOPMAF O.I. C.G. H.G.
21.8 99.6 42.6 At2g07683 3768000 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
21.7 99.6 41.6 At5g14940 831346 proton-dependent oligopeptide transport (POT) family protein F:amino acid transmembrane transporter activity, transporter activity;P:oligopeptide transport, response to nematode;C:membrane;PBMOF O.I. C.G. H.G.
21.5 99.6 188.4 At1g29395 839815 COR414-TM1 encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane. O.I. C.G. H.G.
21.5 99.6 146.8 At1g47710 841182 serpin, putative / serine protease inhibitor, putative F:serine-type endopeptidase inhibitor activity, cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast;MVPBOAF O.I. C.G. H.G.
20.8 99.6 39.7 At2g39710 818555 aspartyl protease family protein Encodes a Cysteine-rich peptide (CRP) family protein O.I. C.G. H.G.
20.7 99.6 14.0 At2g27870 817333 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
20.3 99.6 237.0 At2g39800 818566 P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1) encodes a delta1-pyrroline-5-carboxylate synthase that catalyzes the rate-limiting enzyme in the biosynthesis of proline. Gene is expressed in reproductive organs and tissues under non-stress conditions but in the whole plant under water-limiting condition. Expression is also induced by abscisic acid and salt stress in a light-dependent manner. P5CS1 appears to be involved in salt stress responses related to proline accumulation, including protection from reactive oxidative species. P5CS1 appears to be present in different cells and/or different subcellular locations from P5CS2 in a tissue-dependent manner. O.I. C.G. H.G.
20.2 99.6 86.5 At5g24120 832477 SIGE (SIGMA FACTOR E) Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes. O.I. C.G. H.G.
19.4 99.6 68.0 At1g11210 837662 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO O.I. C.G. H.G.
19.3 99.6 47.5 At1g78510 844187 SPS1 (solanesyl diphosphate synthase 1) Encodes a protein with solanesyl diphosphate synthase activity. O.I. C.G. H.G.
18.9 99.5 260.0 At4g39800 830139 MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1) Referred to as MIPS2 in Mitsuhashi et al 2008. myo-inositol-1-phosphate synthase isoform 1.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization. O.I. C.G. H.G.
18.9 99.5 42.7 At1g76130 843945 AMY2 (ALPHA-AMYLASE-LIKE 2) alpha-amylase, putative / 1,4-alpha-D-glucan glucanohydrolase, putative, strong similarity to alpha-amylase GI:7532799 from (Malus x domestica);contains Pfam profile PF00128: Alpha amylase, catalytic domain. Predicted to be secreted based on SignalP analysis. O.I. C.G. H.G.
18.5 99.5 465.8 At1g01470 837071 LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication. O.I. C.G. H.G.
18.5 99.5 33.9 At2g16990 816202 tetracycline transporter F:tetracycline transporter activity;P:unknown;C:endomembrane system;BOMPFA O.I. C.G. H.G.
18.3 99.5 12.9 At1g03020 839505 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
17.9 99.5 80.5 At5g42570 834264 - F:molecular_function unknown;P:intracellular protein transport;C:endoplasmic reticulum, plasma membrane;MPOFAB O.I. C.G. H.G.
17.8 99.5 18.5 At3g55580 824723 regulator of chromosome condensation (RCC1) family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAV O.I. C.G. H.G.
17.3 99.5 167.8 At1g32900 840184 starch synthase, putative F:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFM O.I. C.G. H.G.
17.2 99.5 34.1 At1g80760 844415 NIP6 Encodes a protein with boron transporter activity. It helps to preferentially direct boron to young developing tissues in the shoot, such as immature leaves, under low boron conditions. This boron channel appears to be impermeable to water, unlike the closely related NIP5;1 boron transporter. This protein also allows the transport of glycerol, urea, and formimide but not larger uncharged solutes such as arabitol and sucrose when it is expressed heterologously. O.I. C.G. H.G.
17.1 99.5 6.4 At2g31850 817742 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFBOP O.I. C.G. H.G.
17.0 99.5 781.4 At1g20450 838633 ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10) Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm. O.I. C.G. H.G.
16.9 99.5 52.0 At1g09240 837444 NAS3 (NICOTIANAMINE SYNTHASE 3) Encodes a nicotianamine synthase. O.I. C.G. H.G.
16.8 99.5 132.4 At4g38580 830015 ATFP6 (FARNESYLATED PROTEIN 6) putative farnesylated protein (At4g38580) mRNA, complete O.I. C.G. H.G.
16.7 99.5 67.6 At1g33230 840217 - F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MPO O.I. C.G. H.G.
16.7 99.5 44.1 At1g67850 843111 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
16.6 99.5 9.0 At5g17030 831566 UGT78D3 (UDP-GLUCOSYL TRANSFERASE 78D3) F:quercetin 3-O-glucosyltransferase activity, flavonol 3-O-arabinosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF O.I. C.G. H.G.
16.2 99.5 55.9 At4g18390 827568 TCP family transcription factor, putative F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMFB O.I. C.G. H.G.
15.7 99.5 108.3 At5g06530 830541 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:plasma membrane;BOMFAPV O.I. C.G. H.G.
15.7 99.5** 16.8 At3g55940 824760 phosphoinositide-specific phospholipase C, putative F:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:plasma membrane;MOFBPV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
503.7	100.0	327.9	At3g06230	819797	ATMKK8	member of MAP Kinase Kinase	O.I.	C.G.	H.G.
494.0	100.0	274.0	At2g38510	818433	MATE efflux protein-related	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAM	O.I.	C.G.	H.G.
445.2	100.0	244.0	At4g16020	3769881	-	-	O.I.	C.G.	H.G.
440.8	100.0	298.7	At3g43500	823436	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
434.8	100.0	107.9	At3g57210	824888	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
380.3	100.0	51.9	At5g43220		-	-	O.I.	C.G.	H.G.
366.0	100.0	184.1	At3g42990	823355	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
360.1	100.0	138.2	At5g36190	833616	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
325.8	100.0	49.2	At1g23270	838936	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPF	O.I.	C.G.	H.G.
283.0	100.0	54.3	At5g04640	830341	AGL99 (AGAMOUS-LIKE 99)	F:transcription factor activity, DNA binding;P:N-terminal protein myristoylation, regulation of transcription, DNA-dependent;C:nucleus;PMFOB	O.I.	C.G.	H.G.
272.4	100.0	123.8	At2g16680	3768265	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
254.1	100.0	357.1	At1g09350	837457	AtGolS3 (Arabidopsis thaliana galactinol synthase 3)	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO	O.I.	C.G.	H.G.
251.6	100.0	58.2	At1g37057	3767056	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
202.1	100.0	171.2	At5g29210	833050	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	O.I.	C.G.	H.G.
201.2	100.0	43.3	At2g19700	816489	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
194.1	100.0	25.1	At1g13760	837936	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
190.5	100.0	42.8	At5g41250	834126	exostosin family protein	F:catalytic activity;P:biological_process unknown;C:membrane;POM	O.I.	C.G.	H.G.
185.5	100.0	229.7	At1g51090	841532	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMVF	O.I.	C.G.	H.G.
184.5	100.0	259.7	At1g16850	838256	unknown protein	F:molecular_function unknown;P:response to salt stress;C:endomembrane system;P	O.I.	C.G.	H.G.
164.8	100.0	61.8	At5g50880	835160	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
142.9	99.9	22.9	At1g02550	837879	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
141.3	99.9	27.2	At5g41490	834150	F-box family protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
134.4	99.9	34.3	At2g30380	817588	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;POMF	O.I.	C.G.	H.G.
128.7	99.9	23.8	At5g53690	835450	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
82.8	99.9	105.4	At1g48100	841228	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBOMVA	O.I.	C.G.	H.G.
71.2	99.9	17.1	At3g16580	820908	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:vacuole;P	O.I.	C.G.	H.G.
69.5	99.9	38.2	At1g46768	841117	RAP2.1 (related to AP2 1)	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.10.	O.I.	C.G.	H.G.
67.7	99.9	97.4	At5g50800	835152	nodulin MtN3 family protein	F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMO	O.I.	C.G.	H.G.
67.6	99.9	616.3	At4g17090	827419	CT-BMY (CHLOROPLAST BETA-AMYLASE)	Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected).	O.I.	C.G.	H.G.
67.4	99.8	11.0	At4g27190	828827	disease resistance protein (NBS-LRR class), putative	F:protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBOFVA	O.I.	C.G.	H.G.
66.1	99.8	128.0	At5g25110	832582	CIPK25 (CBL-INTERACTING PROTEIN KINASE 25)	member of AtCIPKs	O.I.	C.G.	H.G.
62.0	99.8	12.7	At5g04630	830340	CYP77A9	member of CYP77A	O.I.	C.G.	H.G.
60.7	99.8	50.9	At4g04140	3769795	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
58.0	99.8	23.5	At5g55680	835662	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMPFVA	O.I.	C.G.	H.G.
54.7	99.8	16.3	At2g41930	818793	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA	O.I.	C.G.	H.G.
51.0	99.8	32.5	At1g32660	840160	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
50.8	99.8	15.3	At2g13250	3767965	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
49.1	99.8	58.8	At1g32860	840180	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;POF	O.I.	C.G.	H.G.
48.2	99.8	67.0	At4g15130	827179	catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase	F:choline-phosphate cytidylyltransferase activity, catalytic activity, nucleotidyltransferase activity;P:response to cold, biosynthetic process;C:unknown;OMBFPA	O.I.	C.G.	H.G.
47.1	99.8	201.2	At1g02820	839304	late embryogenesis abundant 3 family protein / LEA3 family protein	F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P	O.I.	C.G.	H.G.
46.8	99.8	87.7	At2g21320	816671	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POM	O.I.	C.G.	H.G.
44.7	99.8	425.8	At4g14690	827119	ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)	Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis.	O.I.	C.G.	H.G.
38.0	99.8	7.1	At1g42200	3767228	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
35.7	99.7	15.7	At1g65990	842912	type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein	F:oxidoreductase activity, antioxidant activity;P:biological_process unknown;C:cellular_component unknown;OBPFMA	O.I.	C.G.	H.G.
35.0	99.7	47.0	At3g09540	820111	pectate lyase family protein	F:lyase activity, pectate lyase activity;P:N-terminal protein myristoylation;C:unknown;BPFO	O.I.	C.G.	H.G.
33.8	99.7	54.4	At3g55760	824742	unknown protein	F:unknown;P:unknown;C:chloroplast stroma, chloroplast;POMFB	O.I.	C.G.	H.G.
33.5	99.7	120.0	At3g44450	823570	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.3	99.7	20.1	At4g34650	829617	SQS2 (SQUALENE SYNTHASE 2)	Encodes a protein with similarity to squalene synthase which catalyzes the first committed step in sterol biosynthesis. To date no experimental evidence exists that SQS2 functions as a squalene synthase and some experiments indicate it does not have this function.	O.I.	C.G.	H.G.
31.7	99.7	11.7	At3g32917	3769306	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
31.6	99.7	192.1	At1g80130	844353	binding	F:binding;P:response to oxidative stress;C:membrane;BPOMFAV	O.I.	C.G.	H.G.
31.3	99.7	69.3	At1g53035	841737	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
31.0	99.7	26.4	At2g15800	816075	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
30.9	99.7	70.8	At4g17550	827470	transporter-related	F:sugar:hydrogen symporter activity;P:carbohydrate transport;C:plasma membrane;BMFOPA	O.I.	C.G.	H.G.
28.9	99.7	539.2	At3g50970	824261	LTI30 (LOW TEMPERATURE-INDUCED 30)	Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid.	O.I.	C.G.	H.G.
28.1	99.7	455.5	At5g52310	835307	LTI78 (LOW-TEMPERATURE-INDUCED 78)	cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expression	O.I.	C.G.	H.G.
28.0	99.7	24.9	At3g58070	824976	GIS (GLABROUS INFLORESCENCE STEMS)	Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile�adult leaf transition and inducing the formation of rosette leaves on inflorescence stems.	O.I.	C.G.	H.G.
27.0	99.7	612.9	At2g42540	818854	COR15A (COLD-REGULATED 15A)	A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.	O.I.	C.G.	H.G.
25.7	99.7	331.1	At2g42530	818853	COR15B (COLD REGULATED 15B)	F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF	O.I.	C.G.	H.G.
25.3	99.6	21.0	At4g28150	828930	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
24.9	99.6	60.5	At2g16890	816190	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;P	O.I.	C.G.	H.G.
24.6	99.6	81.4	At5g24470	832518	APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5)	Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light.	O.I.	C.G.	H.G.
24.3	99.6	58.1	At2g28550	817403	RAP2.7 (RELATED TO AP2.7)	F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent, vegetative to reproductive phase transition;C:nucleus;POBV	O.I.	C.G.	H.G.
24.0	99.6	267.1	At5g20830	832206	SUS1 (SUCROSE SYNTHASE 1)	Encodes a protein with sucrose synthase activity (SUS1).	O.I.	C.G.	H.G.
23.7	99.6	134.6	At1g73480	843683	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOPMFVA	O.I.	C.G.	H.G.
23.4	99.6	134.6	At3g24190	822005	ABC1 family protein	F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAV	O.I.	C.G.	H.G.
23.4	99.6	66.1	At1g70900	843429	unknown protein	F:molecular_function unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
23.3	99.6	57.3	At1g21790	838783	-	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MPO	O.I.	C.G.	H.G.
23.2	99.6	44.0	At5g50100	835074	-	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OBPM	O.I.	C.G.	H.G.
22.4	99.6	450.1	At2g28900	817439	ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1)	Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment.	O.I.	C.G.	H.G.
22.3	99.6	44.0	At3g17130	820970	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
21.8	99.6	71.8	At1g64890	842797	integral membrane transporter family protein	F:transporter activity;P:transport;C:membrane;BOPMAF	O.I.	C.G.	H.G.
21.8	99.6	42.6	At2g07683	3768000	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
21.7	99.6	41.6	At5g14940	831346	proton-dependent oligopeptide transport (POT) family protein	F:amino acid transmembrane transporter activity, transporter activity;P:oligopeptide transport, response to nematode;C:membrane;PBMOF	O.I.	C.G.	H.G.
21.5	99.6	188.4	At1g29395	839815	COR414-TM1	encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.	O.I.	C.G.	H.G.
21.5	99.6	146.8	At1g47710	841182	serpin, putative / serine protease inhibitor, putative	F:serine-type endopeptidase inhibitor activity, cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast;MVPBOAF	O.I.	C.G.	H.G.
20.8	99.6	39.7	At2g39710	818555	aspartyl protease family protein	Encodes a Cysteine-rich peptide (CRP) family protein	O.I.	C.G.	H.G.
20.7	99.6	14.0	At2g27870	817333	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
20.3	99.6	237.0	At2g39800	818566	P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1)	encodes a delta1-pyrroline-5-carboxylate synthase that catalyzes the rate-limiting enzyme in the biosynthesis of proline. Gene is expressed in reproductive organs and tissues under non-stress conditions but in the whole plant under water-limiting condition. Expression is also induced by abscisic acid and salt stress in a light-dependent manner. P5CS1 appears to be involved in salt stress responses related to proline accumulation, including protection from reactive oxidative species. P5CS1 appears to be present in different cells and/or different subcellular locations from P5CS2 in a tissue-dependent manner.	O.I.	C.G.	H.G.
20.2	99.6	86.5	At5g24120	832477	SIGE (SIGMA FACTOR E)	Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.	O.I.	C.G.	H.G.
19.4	99.6	68.0	At1g11210	837662	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO	O.I.	C.G.	H.G.
19.3	99.6	47.5	At1g78510	844187	SPS1 (solanesyl diphosphate synthase 1)	Encodes a protein with solanesyl diphosphate synthase activity.	O.I.	C.G.	H.G.
18.9	99.5	260.0	At4g39800	830139	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	** Referred to as MIPS2 in Mitsuhashi et al 2008. myo-inositol-1-phosphate synthase isoform 1.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.	O.I.	C.G.	H.G.
18.9	99.5	42.7	At1g76130	843945	AMY2 (ALPHA-AMYLASE-LIKE 2)	alpha-amylase, putative / 1,4-alpha-D-glucan glucanohydrolase, putative, strong similarity to alpha-amylase GI:7532799 from (Malus x domestica);contains Pfam profile PF00128: Alpha amylase, catalytic domain. Predicted to be secreted based on SignalP analysis.	O.I.	C.G.	H.G.
18.5	99.5	465.8	At1g01470	837071	LEA14 (LATE EMBRYOGENESIS ABUNDANT 14)	Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication.	O.I.	C.G.	H.G.
18.5	99.5	33.9	At2g16990	816202	tetracycline transporter	F:tetracycline transporter activity;P:unknown;C:endomembrane system;BOMPFA	O.I.	C.G.	H.G.
18.3	99.5	12.9	At1g03020	839505	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
17.9	99.5	80.5	At5g42570	834264	-	F:molecular_function unknown;P:intracellular protein transport;C:endoplasmic reticulum, plasma membrane;MPOFAB	O.I.	C.G.	H.G.
17.8	99.5	18.5	At3g55580	824723	regulator of chromosome condensation (RCC1) family protein	F:binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAV	O.I.	C.G.	H.G.
17.3	99.5	167.8	At1g32900	840184	starch synthase, putative	F:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFM	O.I.	C.G.	H.G.
17.2	99.5	34.1	At1g80760	844415	NIP6	Encodes a protein with boron transporter activity. It helps to preferentially direct boron to young developing tissues in the shoot, such as immature leaves, under low boron conditions. This boron channel appears to be impermeable to water, unlike the closely related NIP5;1 boron transporter. This protein also allows the transport of glycerol, urea, and formimide but not larger uncharged solutes such as arabitol and sucrose when it is expressed heterologously.	O.I.	C.G.	H.G.
17.1	99.5	6.4	At2g31850	817742	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFBOP	O.I.	C.G.	H.G.
17.0	99.5	781.4	At1g20450	838633	ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10)	Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.	O.I.	C.G.	H.G.
16.9	99.5	52.0	At1g09240	837444	NAS3 (NICOTIANAMINE SYNTHASE 3)	Encodes a nicotianamine synthase.	O.I.	C.G.	H.G.
16.8	99.5	132.4	At4g38580	830015	ATFP6 (FARNESYLATED PROTEIN 6)	putative farnesylated protein (At4g38580) mRNA, complete	O.I.	C.G.	H.G.
16.7	99.5	67.6	At1g33230	840217	-	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MPO	O.I.	C.G.	H.G.
16.7	99.5	44.1	At1g67850	843111	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
16.6	99.5	9.0	At5g17030	831566	UGT78D3 (UDP-GLUCOSYL TRANSFERASE 78D3)	F:quercetin 3-O-glucosyltransferase activity, flavonol 3-O-arabinosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF	O.I.	C.G.	H.G.
16.2	99.5	55.9	At4g18390	827568	TCP family transcription factor, putative	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
15.7	99.5	108.3	At5g06530	830541	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:plasma membrane;BOMFAPV	O.I.	C.G.	H.G.
15.7	99.5	16.8	At3g55940	824760	phosphoinositide-specific phospholipase C, putative	F:phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:plasma membrane;MOFBPV	O.I.	C.G.	H.G.

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GSM ID	-
Assay name	E-MEXP-1345-raw-cel-1559561229
GSE experiment	-

Microarray experiments to specifically-expressed genes

GSM ID - Assay name E-MEXP-1345-raw-cel-1559561229 GSE experiment -

GSM ID -

Assay name E-MEXP-1345-raw-cel-1559561229

GSE experiment -